CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 186 | R186C | R2949C | nonsyn | Cgc | Tgc | 462 | 462 | 1 | 9110-9112 |
Details of the mutation R186C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 462 | 462 | All | 0.000088 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 99 | 99 | AY.4 | 0.000154 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 54 | 54 | B.1.1.7 | 0.000048 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 38 | 38 | B.1.617.2 | 0.000143 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 25 | 25 | AY.43 | 0.000111 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 22 | 22 | AY.103 | 0.000137 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 19 | 19 | AY.44 | 0.000116 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 15 | 15 | D.2 | 0.001126 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 11 | 11 | AY.3 | 0.000109 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 8 | 8 | AY.5 | 0.000165 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 3 | 3 | B.1.1.243 | 0.012245 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.557 | 0.05 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp4 | 186 | R186C | Cgc | Tgc | 1 | 1 | P.1.10 | 0.000269 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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