CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = N244N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4244N244NN3007NsynaaCaaT176691766919284-9286

Details of the mutation N244N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4244N244NaaCaaT1766917669All0.003379
ORF1ab/nsp4244N244NaaCaaT93119311B.1.1.2841
ORF1ab/nsp4244N244NaaCaaT18141814B.1.1.70.001624
ORF1ab/nsp4244N244NaaCaaT11791179AY.320.627796
ORF1ab/nsp4244N244NaaCaaT515515AY.40.000802
ORF1ab/nsp4244N244NaaCaaT391391AY.440.00238
ORF1ab/nsp4244N244NaaCaaT323323B.1.617.20.001216
ORF1ab/nsp4244N244NaaCaaT272272B.1.4290.0064
ORF1ab/nsp4244N244NaaCaaT227227AY.430.001006
ORF1ab/nsp4244N244NaaCaaT217217B.1.10.003937
ORF1ab/nsp4244N244NaaCaaT179179B.1.1.470.957219
ORF1ab/nsp4244N244NaaCaaT163163B.1.5260.003831
ORF1ab/nsp4244N244NaaCaaT160160AY.200.006218
ORF1ab/nsp4244N244NaaCaaT152152AY.1030.000944
ORF1ab/nsp4244N244NaaCaaT145145B.1.20.001277
ORF1ab/nsp4244N244NaaCaaT138138B.10.001264
ORF1ab/nsp4244N244NaaCaaT132132AY.30.001313
ORF1ab/nsp4244N244NaaCaaT117117C.380.943548
ORF1ab/nsp4244N244NaaCaaT111111B.1.466.20.043427
ORF1ab/nsp4244N244NaaCaaT105105AY.250.000632
ORF1ab/nsp4244N244NaaCaaT104104B.1.1770.001369
ORF1ab/nsp4244N244NaaCaaT8989P.10.001402
ORF1ab/nsp4244N244NaaCaaT8787B.1.4270.004393
ORF1ab/nsp4244N244NaaCaaT6363AY.140.005545
ORF1ab/nsp4244N244NaaCaaT5858B.1.1600.001809
ORF1ab/nsp4244N244NaaCaaT5252AM.40.185714
ORF1ab/nsp4244N244NaaCaaT5252AY.60.002139
ORF1ab/nsp4244N244NaaCaaT4747AY.420.001891
ORF1ab/nsp4244N244NaaCaaT4646B.1.3710.051627
ORF1ab/nsp4244N244NaaCaaT4444AY.4.20.000954
ORF1ab/nsp4244N244NaaCaaT3838AY.260.001076
ORF1ab/nsp4244N244NaaCaaT3838B.1.2430.002644
ORF1ab/nsp4244N244NaaCaaT3434B.1.5960.002963
ORF1ab/nsp4244N244NaaCaaT3434P.1.150.0079
ORF1ab/nsp4244N244NaaCaaT3232AY.330.002137
ORF1ab/nsp4244N244NaaCaaT3030AY.1020.000795
ORF1ab/nsp4244N244NaaCaaT3030AY.1210.00406
ORF1ab/nsp4244N244NaaCaaT3030B.1.1.1600.714286
ORF1ab/nsp4244N244NaaCaaT3030B.1.1.700.010232
ORF1ab/nsp4244N244NaaCaaT2929B.1.5250.003282
ORF1ab/nsp4244N244NaaCaaT2828B.1.1.5190.001112
ORF1ab/nsp4244N244NaaCaaT2727AY.370.008534
ORF1ab/nsp4244N244NaaCaaT2626B.1.360.003793
ORF1ab/nsp4244N244NaaCaaT2525Q.10.003158
ORF1ab/nsp4244N244NaaCaaT2424AY.1180.001504
ORF1ab/nsp4244N244NaaCaaT2222AY.1060.007368
ORF1ab/nsp4244N244NaaCaaT1919AY.1190.000671
ORF1ab/nsp4244N244NaaCaaT1919B.1.6210.001682
ORF1ab/nsp4244N244NaaCaaT1818AY.39.10.000713
ORF1ab/nsp4244N244NaaCaaT1717AY.1130.002421
ORF1ab/nsp4244N244NaaCaaT1717AY.390.00042
ORF1ab/nsp4244N244NaaCaaT1717B.1.2210.001208
ORF1ab/nsp4244N244NaaCaaT1616AY.290.000252
ORF1ab/nsp4244N244NaaCaaT1616AZ.10.013877
ORF1ab/nsp4244N244NaaCaaT1616B.1.258.170.001664
ORF1ab/nsp4244N244NaaCaaT1515AY.1160.004302
ORF1ab/nsp4244N244NaaCaaT1515AY.950.011416
ORF1ab/nsp4244N244NaaCaaT1414B.1.177.770.010167
ORF1ab/nsp4244N244NaaCaaT1313B.1.1.1130.090909
ORF1ab/nsp4244N244NaaCaaT1313B.1.1.2160.011576
ORF1ab/nsp4244N244NaaCaaT1313B.1.1.250.007391
ORF1ab/nsp4244N244NaaCaaT1313B.1.3510.000386
ORF1ab/nsp4244N244NaaCaaT1212B.1.1.3480.009554
ORF1ab/nsp4244N244NaaCaaT1212B.1.5820.005888
ORF1ab/nsp4244N244NaaCaaT1212C.370.001393
ORF1ab/nsp4244N244NaaCaaT1111B.1.2130.164179
ORF1ab/nsp4244N244NaaCaaT1111B.1.2580.000732
ORF1ab/nsp4244N244NaaCaaT1111B.1.617.10.001419
ORF1ab/nsp4244N244NaaCaaT1010A.290.053191
ORF1ab/nsp4244N244NaaCaaT1010AY.470.000311
ORF1ab/nsp4244N244NaaCaaT1010AY.610.001048
ORF1ab/nsp4244N244NaaCaaT1010B.1.1.3170.004117
ORF1ab/nsp4244N244NaaCaaT1010B.1.177.810.001893
ORF1ab/nsp4244N244NaaCaaT1010B.1.351.20.003026
ORF1ab/nsp4244N244NaaCaaT99AM.21
ORF1ab/nsp4244N244NaaCaaT99AY.1000.000414
ORF1ab/nsp4244N244NaaCaaT99B.1.1.1760.003954
ORF1ab/nsp4244N244NaaCaaT99B.1.1.330.003788
ORF1ab/nsp4244N244NaaCaaT99B.1.160.150.044554
ORF1ab/nsp4244N244NaaCaaT88AY.1170.000676
ORF1ab/nsp4244N244NaaCaaT88AY.1200.000297
ORF1ab/nsp4244N244NaaCaaT88AY.50.000165
ORF1ab/nsp4244N244NaaCaaT88AY.5.30.002699
ORF1ab/nsp4244N244NaaCaaT88B.1.1.3180.002414
ORF1ab/nsp4244N244NaaCaaT88B.1.6370.000585
ORF1ab/nsp4244N244NaaCaaT77AY.230.000488
ORF1ab/nsp4244N244NaaCaaT77AY.34.10.00357
ORF1ab/nsp4244N244NaaCaaT77AY.350.001631
ORF1ab/nsp4244N244NaaCaaT77AY.46.40.001152
ORF1ab/nsp4244N244NaaCaaT77AY.98.10.000339
ORF1ab/nsp4244N244NaaCaaT77B.1.1.2220.001428
ORF1ab/nsp4244N244NaaCaaT77B.1.3110.001922
ORF1ab/nsp4244N244NaaCaaT77P.1.140.000335
ORF1ab/nsp4244N244NaaCaaT66AY.280.011342
ORF1ab/nsp4244N244NaaCaaT66AY.300.002374
ORF1ab/nsp4244N244NaaCaaT66AY.9.20.00022
ORF1ab/nsp4244N244NaaCaaT66P.1.170.000971
ORF1ab/nsp4244N244NaaCaaT55A.2.50.002495
ORF1ab/nsp4244N244NaaCaaT55AE.80.002445
ORF1ab/nsp4244N244NaaCaaT55AY.4.40.002046
ORF1ab/nsp4244N244NaaCaaT55AY.460.00052
ORF1ab/nsp4244N244NaaCaaT55AY.9.10.000419
ORF1ab/nsp4244N244NaaCaaT55AY.99.20.000461
ORF1ab/nsp4244N244NaaCaaT55B.1.1.390.002548
ORF1ab/nsp4244N244NaaCaaT55B.1.177.570.001405
ORF1ab/nsp4244N244NaaCaaT55C.36.30.002836
ORF1ab/nsp4244N244NaaCaaT55D.20.000375
ORF1ab/nsp4244N244NaaCaaT44AY.1110.000733
ORF1ab/nsp4244N244NaaCaaT44AY.16.10.00188
ORF1ab/nsp4244N244NaaCaaT44AY.380.001997
ORF1ab/nsp4244N244NaaCaaT44AY.730.002661
ORF1ab/nsp4244N244NaaCaaT44AY.750.000224
ORF1ab/nsp4244N244NaaCaaT44AY.90.00027
ORF1ab/nsp4244N244NaaCaaT44B0.000511
ORF1ab/nsp4244N244NaaCaaT44B.1.1.3060.001754
ORF1ab/nsp4244N244NaaCaaT44B.1.1.370.000771
ORF1ab/nsp4244N244NaaCaaT44B.1.1.3970.009009
ORF1ab/nsp4244N244NaaCaaT44B.1.177.120.000607
ORF1ab/nsp4244N244NaaCaaT44B.1.438.10.000429
ORF1ab/nsp4244N244NaaCaaT33A0.001161
ORF1ab/nsp4244N244NaaCaaT33AY.1090.002219
ORF1ab/nsp4244N244NaaCaaT33AY.116.10.000934
ORF1ab/nsp4244N244NaaCaaT33AY.3.10.000256
ORF1ab/nsp4244N244NaaCaaT33AY.500.002398
ORF1ab/nsp4244N244NaaCaaT33AY.70.000588
ORF1ab/nsp4244N244NaaCaaT33AY.980.000237
ORF1ab/nsp4244N244NaaCaaT33B.1.1.1700.003741
ORF1ab/nsp4244N244NaaCaaT33B.1.1.2530.007519
ORF1ab/nsp4244N244NaaCaaT33B.1.1.3260.005282
ORF1ab/nsp4244N244NaaCaaT33B.1.160.90.021583
ORF1ab/nsp4244N244NaaCaaT33B.1.177.210.000229
ORF1ab/nsp4244N244NaaCaaT33B.1.214.20.001799
ORF1ab/nsp4244N244NaaCaaT33B.1.243.20.043478
ORF1ab/nsp4244N244NaaCaaT33B.1.3960.002117
ORF1ab/nsp4244N244NaaCaaT33B.1.5990.010949
ORF1ab/nsp4244N244NaaCaaT33B.1.6090.001438
ORF1ab/nsp4244N244NaaCaaT33B.1.930.002801
ORF1ab/nsp4244N244NaaCaaT33P.1.100.000808
ORF1ab/nsp4244N244NaaCaaT33P.20.00056
ORF1ab/nsp4244N244NaaCaaT22AY.1040.003968
ORF1ab/nsp4244N244NaaCaaT22AY.1080.002205
ORF1ab/nsp4244N244NaaCaaT22AY.1140.000462
ORF1ab/nsp4244N244NaaCaaT22AY.130.000322
ORF1ab/nsp4244N244NaaCaaT22AY.270.000129
ORF1ab/nsp4244N244NaaCaaT22AY.29.10.000441
ORF1ab/nsp4244N244NaaCaaT22AY.39.1.10.001449
ORF1ab/nsp4244N244NaaCaaT22AY.4.50.000215
ORF1ab/nsp4244N244NaaCaaT22AY.540.000191
ORF1ab/nsp4244N244NaaCaaT22AY.590.001059
ORF1ab/nsp4244N244NaaCaaT22AY.720.002721
ORF1ab/nsp4244N244NaaCaaT22AY.740.000231
ORF1ab/nsp4244N244NaaCaaT22AY.75.10.000361
ORF1ab/nsp4244N244NaaCaaT22AY.830.003448
ORF1ab/nsp4244N244NaaCaaT22AY.990.002099
ORF1ab/nsp4244N244NaaCaaT22B.1.1.10.000653
ORF1ab/nsp4244N244NaaCaaT22B.1.1.2610.017241
ORF1ab/nsp4244N244NaaCaaT22B.1.1.2940.002532
ORF1ab/nsp4244N244NaaCaaT22B.1.1.3110.000716
ORF1ab/nsp4244N244NaaCaaT22B.1.1.3120.003824
ORF1ab/nsp4244N244NaaCaaT22B.1.1.3770.002762
ORF1ab/nsp4244N244NaaCaaT22B.1.1.3780.014599
ORF1ab/nsp4244N244NaaCaaT22B.1.1.560.035714
ORF1ab/nsp4244N244NaaCaaT22B.1.1110.00235
ORF1ab/nsp4244N244NaaCaaT22B.1.1280.001271
ORF1ab/nsp4244N244NaaCaaT22B.1.160.280.005848
ORF1ab/nsp4244N244NaaCaaT22B.1.177.40.000422
ORF1ab/nsp4244N244NaaCaaT22B.1.177.50.002484
ORF1ab/nsp4244N244NaaCaaT22B.1.2340.000264
ORF1ab/nsp4244N244NaaCaaT22B.1.2360.004107
ORF1ab/nsp4244N244NaaCaaT22B.1.258.140.001961
ORF1ab/nsp4244N244NaaCaaT22B.1.2910.038462
ORF1ab/nsp4244N244NaaCaaT22B.1.36.10.002281
ORF1ab/nsp4244N244NaaCaaT22B.1.36.100.009569
ORF1ab/nsp4244N244NaaCaaT22B.1.36.290.001035
ORF1ab/nsp4244N244NaaCaaT22B.1.3910.002255
ORF1ab/nsp4244N244NaaCaaT22B.1.4590.008163
ORF1ab/nsp4244N244NaaCaaT22B.1.4990.002101
ORF1ab/nsp4244N244NaaCaaT22B.1.5100.052632
ORF1ab/nsp4244N244NaaCaaT22B.1.5350.057143
ORF1ab/nsp4244N244NaaCaaT22B.1.5650.001621
ORF1ab/nsp4244N244NaaCaaT22B.1.5750.000607
ORF1ab/nsp4244N244NaaCaaT22B.1.6270.00404
ORF1ab/nsp4244N244NaaCaaT22B.400.000729
ORF1ab/nsp4244N244NaaCaaT22C.320.046512
ORF1ab/nsp4244N244NaaCaaT22C.36.3.10.005435
ORF1ab/nsp4244N244NaaCaaT22Q.30.00029
ORF1ab/nsp4244N244NaaCaaT11A.20.000662
ORF1ab/nsp4244N244NaaCaaT11A.280.002646
ORF1ab/nsp4244N244NaaCaaT11AD.20.000219
ORF1ab/nsp4244N244NaaCaaT11AU.30.00211
ORF1ab/nsp4244N244NaaCaaT11AY.1050.000643
ORF1ab/nsp4244N244NaaCaaT11AY.120.000316
ORF1ab/nsp4244N244NaaCaaT11AY.340.000097
ORF1ab/nsp4244N244NaaCaaT11AY.4.30.000842
ORF1ab/nsp4244N244NaaCaaT11AY.410.000294
ORF1ab/nsp4244N244NaaCaaT11AY.450.000122
ORF1ab/nsp4244N244NaaCaaT11AY.46.30.000934
ORF1ab/nsp4244N244NaaCaaT11AY.550.000917
ORF1ab/nsp4244N244NaaCaaT11AY.580.000907
ORF1ab/nsp4244N244NaaCaaT11AY.630.000387
ORF1ab/nsp4244N244NaaCaaT11AY.690.000187
ORF1ab/nsp4244N244NaaCaaT11AY.710.000475
ORF1ab/nsp4244N244NaaCaaT11AY.770.001127
ORF1ab/nsp4244N244NaaCaaT11AY.780.001541
ORF1ab/nsp4244N244NaaCaaT11AY.840.000437
ORF1ab/nsp4244N244NaaCaaT11AY.880.000884
ORF1ab/nsp4244N244NaaCaaT11AY.9.2.10.001976
ORF1ab/nsp4244N244NaaCaaT11AY.910.00073
ORF1ab/nsp4244N244NaaCaaT11AY.920.000287
ORF1ab/nsp4244N244NaaCaaT11AY.970.001701
ORF1ab/nsp4244N244NaaCaaT11B.1.1.1610.003534
ORF1ab/nsp4244N244NaaCaaT11B.1.1.1890.001513
ORF1ab/nsp4244N244NaaCaaT11B.1.1.1980.001468
ORF1ab/nsp4244N244NaaCaaT11B.1.1.2250.007194
ORF1ab/nsp4244N244NaaCaaT11B.1.1.2360.006897
ORF1ab/nsp4244N244NaaCaaT11B.1.1.2580.003257
ORF1ab/nsp4244N244NaaCaaT11B.1.1.2690.001353
ORF1ab/nsp4244N244NaaCaaT11B.1.1.2910.000742
ORF1ab/nsp4244N244NaaCaaT11B.1.1.3010.001179
ORF1ab/nsp4244N244NaaCaaT11B.1.1.3220.008772
ORF1ab/nsp4244N244NaaCaaT11B.1.1.3690.000446
ORF1ab/nsp4244N244NaaCaaT11B.1.1.4870.005587
ORF1ab/nsp4244N244NaaCaaT11B.1.1.5260.003546
ORF1ab/nsp4244N244NaaCaaT11B.1.1.580.005376
ORF1ab/nsp4244N244NaaCaaT11B.1.1.80.003584
ORF1ab/nsp4244N244NaaCaaT11B.1.1460.004237
ORF1ab/nsp4244N244NaaCaaT11B.1.160.260.002421
ORF1ab/nsp4244N244NaaCaaT11B.1.177.230.003236
ORF1ab/nsp4244N244NaaCaaT11B.1.177.330.001645
ORF1ab/nsp4244N244NaaCaaT11B.1.177.530.002392
ORF1ab/nsp4244N244NaaCaaT11B.1.177.70.000165
ORF1ab/nsp4244N244NaaCaaT11B.1.177.730.000566
ORF1ab/nsp4244N244NaaCaaT11B.1.177.840.006667
ORF1ab/nsp4244N244NaaCaaT11B.1.2220.001692
ORF1ab/nsp4244N244NaaCaaT11B.1.2240.025
ORF1ab/nsp4244N244NaaCaaT11B.1.2320.000537
ORF1ab/nsp4244N244NaaCaaT11B.1.2410.000812
ORF1ab/nsp4244N244NaaCaaT11B.1.258.70.001912
ORF1ab/nsp4244N244NaaCaaT11B.1.2650.001271
ORF1ab/nsp4244N244NaaCaaT11B.1.2790.000514
ORF1ab/nsp4244N244NaaCaaT11B.1.3330.010526
ORF1ab/nsp4244N244NaaCaaT11B.1.3380.008621
ORF1ab/nsp4244N244NaaCaaT11B.1.3490.000715
ORF1ab/nsp4244N244NaaCaaT11B.1.36.220.001208
ORF1ab/nsp4244N244NaaCaaT11B.1.36.80.001
ORF1ab/nsp4244N244NaaCaaT11B.1.3690.000285
ORF1ab/nsp4244N244NaaCaaT11B.1.3970.004854
ORF1ab/nsp4244N244NaaCaaT11B.1.3990.001934
ORF1ab/nsp4244N244NaaCaaT11B.1.4110.003704
ORF1ab/nsp4244N244NaaCaaT11B.1.4280.00102
ORF1ab/nsp4244N244NaaCaaT11B.1.4450.011765
ORF1ab/nsp4244N244NaaCaaT11B.1.4460.02
ORF1ab/nsp4244N244NaaCaaT11B.1.4560.003268
ORF1ab/nsp4244N244NaaCaaT11B.1.4620.007246
ORF1ab/nsp4244N244NaaCaaT11B.1.466.10.007194
ORF1ab/nsp4244N244NaaCaaT11B.1.4670.04
ORF1ab/nsp4244N244NaaCaaT11B.1.4680.005714
ORF1ab/nsp4244N244NaaCaaT11B.1.4800.002488
ORF1ab/nsp4244N244NaaCaaT11B.1.4970.000315
ORF1ab/nsp4244N244NaaCaaT11B.1.5030.002488
ORF1ab/nsp4244N244NaaCaaT11B.1.5090.000866
ORF1ab/nsp4244N244NaaCaaT11B.1.5170.000427
ORF1ab/nsp4244N244NaaCaaT11B.1.5240.001406
ORF1ab/nsp4244N244NaaCaaT11B.1.5380.008065
ORF1ab/nsp4244N244NaaCaaT11B.1.5510.00129
ORF1ab/nsp4244N244NaaCaaT11B.1.5610.000397
ORF1ab/nsp4244N244NaaCaaT11B.1.5680.001111
ORF1ab/nsp4244N244NaaCaaT11B.1.5760.000907
ORF1ab/nsp4244N244NaaCaaT11B.1.5870.001898
ORF1ab/nsp4244N244NaaCaaT11B.1.5880.00091
ORF1ab/nsp4244N244NaaCaaT11B.1.5970.00463
ORF1ab/nsp4244N244NaaCaaT11B.1.617.30.002985
ORF1ab/nsp4244N244NaaCaaT11B.1.621.10.000506
ORF1ab/nsp4244N244NaaCaaT11B.1.6230.000536
ORF1ab/nsp4244N244NaaCaaT11B.1.6280.000352
ORF1ab/nsp4244N244NaaCaaT11B.1.6310.003367
ORF1ab/nsp4244N244NaaCaaT11B.60.00091
ORF1ab/nsp4244N244NaaCaaT11B.6.30.026316
ORF1ab/nsp4244N244NaaCaaT11C.160.00106
ORF1ab/nsp4244N244NaaCaaT11C.50.090909

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.