CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 438 | L438F | L3201F | nonsyn | Ctt | Ttt | 1294 | 1293 | 0.999227 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438F | L3201F | nonsyn | CtT | TtC | 1294 | 1 | 0.000772798 | 9866-9868 |
Details of the mutation L438F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1293 | 1294 | All | 0.000247 |
ORF1ab/nsp4 | 438 | L438F | CtT | TtC | 1 | 1294 | All | 0 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 268 | 268 | B.1.2 | 0.00236 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 231 | 231 | B.1.258 | 0.015372 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 152 | 152 | B.1.1.7 | 0.000136 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 68 | 68 | B.1.177.4 | 0.014352 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 55 | 55 | AY.83 | 0.094828 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 48 | 48 | AY.4 | 0.000075 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 35 | 35 | B.1.509 | 0.030303 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 29 | 29 | B.1.308 | 1 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 19 | 19 | B.1.1 | 0.000345 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 17 | 17 | AY.73 | 0.011311 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 17 | 17 | B.1.1.39 | 0.008665 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 16 | 16 | B.1 | 0.000147 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 16 | 16 | B.1.617.2 | 0.00006 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 14 | 15 | AY.44 | 0.000085 |
ORF1ab/nsp4 | 438 | L438F | CtT | TtC | 1 | 15 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 14 | 14 | AY.103 | 0.000087 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 14 | 14 | AY.43 | 0.000062 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 13 | 13 | B.1.160 | 0.000405 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 12 | 12 | B.1.177 | 0.000158 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 12 | 12 | B.1.427 | 0.000606 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 11 | 11 | AY.4.5 | 0.001182 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 10 | 10 | B.1.639 | 0.217391 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 9 | 9 | B.1.1.1 | 0.00294 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 9 | 9 | C.1 | 0.021531 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 8 | 8 | B.1.111 | 0.009401 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 7 | 7 | AY.106 | 0.002344 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 7 | 7 | AY.99.2 | 0.000645 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 7 | 7 | B.1.1.25 | 0.00398 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 6 | 6 | B.1.1.133 | 0.050847 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 6 | 6 | B.1.240 | 0.001293 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 5 | 5 | B.1.577 | 0.003436 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 5 | 5 | C.14 | 0.021645 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 4 | 4 | B.1.435 | 0.045455 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 3 | 3 | B.1.1.47 | 0.016043 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 3 | 3 | B.1.549 | 0.021583 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | B.1.1.243 | 0.008163 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | B.1.574 | 0.004301 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | P.7 | 0.008734 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.4.5 | 0.011905 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | P.1.14 | 0.000048 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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