CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = L428L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4428L428LL3191LsynCtaTta131712460.946099836-9838
ORF1ab/nsp4428L428LL3191LsynctActG1317530.0402439836-9838
ORF1ab/nsp4428L428LL3191LsynctActT1317140.01063029836-9838
ORF1ab/nsp4428L428LL3191LsynctActC131740.003037219836-9838

Details of the mutation L428L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4428L428LCtaTta12461317All0.000238
ORF1ab/nsp4428L428LctActG531317All0.00001
ORF1ab/nsp4428L428LctActT141317All0.000003
ORF1ab/nsp4428L428LctActC41317All0.000001
ORF1ab/nsp4428L428LCtaTta664680B.1.1.70.000594
ORF1ab/nsp4428L428LctActG15680B.1.1.70.000013
ORF1ab/nsp4428L428LctActT1680B.1.1.70.000001
ORF1ab/nsp4428L428LCtaTta6767B.1.1.120.5
ORF1ab/nsp4428L428LCtaTta6060B.1.20.000528
ORF1ab/nsp4428L428LCtaTta6060P.1.10.01906
ORF1ab/nsp4428L428LCtaTta5656AY.40.000087
ORF1ab/nsp4428L428LCtaTta4042B.1.617.20.000151
ORF1ab/nsp4428L428LctActG242B.1.617.20.000008
ORF1ab/nsp4428L428LCtaTta2426B.10.00022
ORF1ab/nsp4428L428LctActT126B.10.000009
ORF1ab/nsp4428L428LctActG126B.10.000009
ORF1ab/nsp4428L428LCtaTta1323AY.290.000205
ORF1ab/nsp4428L428LctActG1023AY.290.000158
ORF1ab/nsp4428L428LCtaTta2121AY.440.000128
ORF1ab/nsp4428L428LCtaTta1718AY.1190.0006
ORF1ab/nsp4428L428LctActG118AY.1190.000035
ORF1ab/nsp4428L428LCtaTta1314AY.750.000728
ORF1ab/nsp4428L428LctActG114AY.750.000056
ORF1ab/nsp4428L428LCtaTta1213AY.1030.000075
ORF1ab/nsp4428L428LctActG113AY.1030.000006
ORF1ab/nsp4428L428LCtaTta1313B.1.1.330.005471
ORF1ab/nsp4428L428LCtaTta1111B.1.1.5190.000437
ORF1ab/nsp4428L428LCtaTta1010B.1.5820.004907
ORF1ab/nsp4428L428LCtaTta99AY.430.00004
ORF1ab/nsp4428L428LCtaTta88AY.470.000249
ORF1ab/nsp4428L428LCtaTta68B.1.10.000109
ORF1ab/nsp4428L428LctActT18B.1.10.000018
ORF1ab/nsp4428L428LctActC18B.1.10.000018
ORF1ab/nsp4428L428LCtaTta88B.1.1770.000105
ORF1ab/nsp4428L428LCtaTta37B.1.2210.000213
ORF1ab/nsp4428L428LctActT27B.1.2210.000142
ORF1ab/nsp4428L428LctActG27B.1.2210.000142
ORF1ab/nsp4428L428LctActT57B.1.4290.000118
ORF1ab/nsp4428L428LCtaTta27B.1.4290.000047
ORF1ab/nsp4428L428LCtaTta56AY.250.00003
ORF1ab/nsp4428L428LctActG16AY.250.000006
ORF1ab/nsp4428L428LctActT46B.1.1600.000125
ORF1ab/nsp4428L428LctActC16B.1.1600.000031
ORF1ab/nsp4428L428LctActG16B.1.1600.000031
ORF1ab/nsp4428L428LCtaTta66B.1.5260.000141
ORF1ab/nsp4428L428LCtaTta55A.10.001409
ORF1ab/nsp4428L428LCtaTta55AY.200.000194
ORF1ab/nsp4428L428LctActG35AY.50.000062
ORF1ab/nsp4428L428LCtaTta25AY.50.000041
ORF1ab/nsp4428L428LCtaTta55B.1.1.1570.004566
ORF1ab/nsp4428L428LCtaTta55B.1.5250.000566
ORF1ab/nsp4428L428LCtaTta44AY.270.000259
ORF1ab/nsp4428L428LCtaTta44AY.540.000381
ORF1ab/nsp4428L428LCtaTta44B.1.36.290.002069
ORF1ab/nsp4428L428LCtaTta230.111111
ORF1ab/nsp4428L428LctActG130.055556
ORF1ab/nsp4428L428LCtaTta33AY.30.00003
ORF1ab/nsp4428L428LCtaTta33AY.300.001187
ORF1ab/nsp4428L428LCtaTta33AY.380.001498
ORF1ab/nsp4428L428LCtaTta33AY.390.000074
ORF1ab/nsp4428L428LCtaTta33AY.450.000365
ORF1ab/nsp4428L428LCtaTta33AY.7.10.000338
ORF1ab/nsp4428L428LCtaTta33AY.75.10.000541
ORF1ab/nsp4428L428LCtaTta33AY.900.002053
ORF1ab/nsp4428L428LCtaTta33B.1.1.3850.013393
ORF1ab/nsp4428L428LctActG33B.1.177.520.005272
ORF1ab/nsp4428L428LCtaTta33B.1.3510.000089
ORF1ab/nsp4428L428LCtaTta33B.1.4270.000151
ORF1ab/nsp4428L428LCtaTta33B.1.5440.018072
ORF1ab/nsp4428L428LCtaTta33P.10.000047
ORF1ab/nsp4428L428LCtaTta22AY.99.20.000184
ORF1ab/nsp4428L428LctActG12B0.000128
ORF1ab/nsp4428L428LCtaTta12B0.000128
ORF1ab/nsp4428L428LctActG22B.1.3050.004301
ORF1ab/nsp4428L428LCtaTta22B.1.4090.001563
ORF1ab/nsp4428L428LCtaTta22B.1.617.10.000258
ORF1ab/nsp4428L428LCtaTta22B.1.6210.000177
ORF1ab/nsp4428L428LCtaTta22N.10.033898
ORF1ab/nsp4428L428LCtaTta22R.10.00018
ORF1ab/nsp4428L428LctActG11A.2.50.000499
ORF1ab/nsp4428L428LCtaTta11AY.1000.000046
ORF1ab/nsp4428L428LCtaTta11AY.1020.000027
ORF1ab/nsp4428L428LCtaTta11AY.140.000088
ORF1ab/nsp4428L428LCtaTta11AY.280.00189
ORF1ab/nsp4428L428LCtaTta11AY.3.10.000085
ORF1ab/nsp4428L428LctActG11AY.360.000148
ORF1ab/nsp4428L428LCtaTta11AY.4.50.000107
ORF1ab/nsp4428L428LCtaTta11AY.60.000041
ORF1ab/nsp4428L428LCtaTta11AY.610.000105
ORF1ab/nsp4428L428LCtaTta11AY.9.10.000084
ORF1ab/nsp4428L428LctActG11AY.980.000079
ORF1ab/nsp4428L428LCtaTta11B.1.1.1760.000439
ORF1ab/nsp4428L428LCtaTta11B.1.1.2370.005405
ORF1ab/nsp4428L428LCtaTta11B.1.1.280.000311
ORF1ab/nsp4428L428LCtaTta11B.1.1.3060.000438
ORF1ab/nsp4428L428LctActC11B.1.1.3260.001761
ORF1ab/nsp4428L428LCtaTta11B.1.1.3760.005952
ORF1ab/nsp4428L428LctActG11B.1.1.4160.000905
ORF1ab/nsp4428L428LctActG11B.1.1.500.000679
ORF1ab/nsp4428L428LCtaTta11B.1.177.180.00116
ORF1ab/nsp4428L428LCtaTta11B.1.177.210.000076
ORF1ab/nsp4428L428LctActC11B.1.177.330.001645
ORF1ab/nsp4428L428LCtaTta11B.1.177.600.000218
ORF1ab/nsp4428L428LCtaTta11B.1.177.810.000189
ORF1ab/nsp4428L428LCtaTta11B.1.2100.002132
ORF1ab/nsp4428L428LCtaTta11B.1.2580.000067
ORF1ab/nsp4428L428LCtaTta11B.1.3610.001289
ORF1ab/nsp4428L428LctActG11B.1.4800.002488
ORF1ab/nsp4428L428LCtaTta11B.1.4970.000315
ORF1ab/nsp4428L428LCtaTta11B.1.5610.000397
ORF1ab/nsp4428L428LCtaTta11B.1.5750.000303
ORF1ab/nsp4428L428LCtaTta11B.1.5960.000087
ORF1ab/nsp4428L428LCtaTta11B.1.6120.002653
ORF1ab/nsp4428L428LCtaTta11C.370.000116
ORF1ab/nsp4428L428LCtaTta11D.20.000075
ORF1ab/nsp4428L428LCtaTta11P.1.140.000048
ORF1ab/nsp4428L428LctActG11P.1.70.000319
ORF1ab/nsp4428L428LctActG11P.20.000187
ORF1ab/nsp4428L428LCtaTta11Q.10.000126