CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = L417L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4417L417LL3180LsynCtgTtg18680113850.6094759803-9805
ORF1ab/nsp4417L417LL3180LsynctGctT1868068200.3650969803-9805
ORF1ab/nsp4417L417LL3180LsynctGctA186804050.02168099803-9805
ORF1ab/nsp4417L417LL3180LsynctGctC18680690.003693799803-9805
ORF1ab/nsp4417L417LL3180LsynCtGTtA1868010.00005353329803-9805

Details of the mutation L417L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4417L417LCtgTtg1138518680All0.002178
ORF1ab/nsp4417L417LctGctT682018680All0.001304
ORF1ab/nsp4417L417LctGctA40518680All0.000077
ORF1ab/nsp4417L417LctGctC6918680All0.000013
ORF1ab/nsp4417L417LCtGTtA118680All0
ORF1ab/nsp4417L417LctGctT22332889AY.40.003475
ORF1ab/nsp4417L417LCtgTtg6332889AY.40.000985
ORF1ab/nsp4417L417LctGctA232889AY.40.000036
ORF1ab/nsp4417L417LCtgTtg14831910B.1.1.70.001328
ORF1ab/nsp4417L417LctGctT3591910B.1.1.70.000321
ORF1ab/nsp4417L417LctGctA341910B.1.1.70.00003
ORF1ab/nsp4417L417LctGctC341910B.1.1.70.00003
ORF1ab/nsp4417L417LCtgTtg14241438B.1.4290.033505
ORF1ab/nsp4417L417LctGctT141438B.1.4290.000329
ORF1ab/nsp4417L417LCtgTtg11791301AY.430.005224
ORF1ab/nsp4417L417LctGctT1191301AY.430.000527
ORF1ab/nsp4417L417LctGctA21301AY.430.000009
ORF1ab/nsp4417L417LctGctC11301AY.430.000004
ORF1ab/nsp4417L417LCtgTtg7601152B.1.617.20.002862
ORF1ab/nsp4417L417LctGctT3611152B.1.617.20.001359
ORF1ab/nsp4417L417LctGctA281152B.1.617.20.000105
ORF1ab/nsp4417L417LctGctC31152B.1.617.20.000011
ORF1ab/nsp4417L417LctGctT736736W.40.994595
ORF1ab/nsp4417L417LCtgTtg667670B.1.1.2140.03699
ORF1ab/nsp4417L417LctGctT3670B.1.1.2140.000166
ORF1ab/nsp4417L417LCtgTtg642642AY.46.10.659138
ORF1ab/nsp4417L417LCtgTtg569631B.1.20.00501
ORF1ab/nsp4417L417LctGctT52631B.1.20.000458
ORF1ab/nsp4417L417LctGctA7631B.1.20.000062
ORF1ab/nsp4417L417LctGctC3631B.1.20.000026
ORF1ab/nsp4417L417LCtgTtg366481AY.250.002201
ORF1ab/nsp4417L417LctGctT84481AY.250.000505
ORF1ab/nsp4417L417LctGctA31481AY.250.000186
ORF1ab/nsp4417L417LctGctT416416B.1.177.530.995215
ORF1ab/nsp4417L417LCtgTtg132237AY.440.000803
ORF1ab/nsp4417L417LctGctT103237AY.440.000627
ORF1ab/nsp4417L417LctGctA2237AY.440.000012
ORF1ab/nsp4417L417LCtgTtg173236AY.390.004275
ORF1ab/nsp4417L417LctGctT62236AY.390.001532
ORF1ab/nsp4417L417LctGctA1236AY.390.000025
ORF1ab/nsp4417L417LCtgTtg195220B.1.1770.002568
ORF1ab/nsp4417L417LctGctT24220B.1.1770.000316
ORF1ab/nsp4417L417LctGctA1220B.1.1770.000013
ORF1ab/nsp4417L417LctGctA101210B.1.3510.003002
ORF1ab/nsp4417L417LCtgTtg100210B.1.3510.002973
ORF1ab/nsp4417L417LctGctT9210B.1.3510.000268
ORF1ab/nsp4417L417LCtgTtg183209AY.1020.004852
ORF1ab/nsp4417L417LctGctT26209AY.1020.000689
ORF1ab/nsp4417L417LctGctT207207W.21
ORF1ab/nsp4417L417LctGctT196197AY.120.061947
ORF1ab/nsp4417L417LCtgTtg1197AY.120.000316
ORF1ab/nsp4417L417LCtgTtg89189B.10.000815
ORF1ab/nsp4417L417LctGctT58189B.10.000531
ORF1ab/nsp4417L417LctGctA23189B.10.000211
ORF1ab/nsp4417L417LctGctC19189B.10.000174
ORF1ab/nsp4417L417LctGctT188188W.30.989474
ORF1ab/nsp4417L417LctGctT88182P.10.001386
ORF1ab/nsp4417L417LCtgTtg80182P.10.00126
ORF1ab/nsp4417L417LctGctA14182P.10.000221
ORF1ab/nsp4417L417LCtgTtg119179AY.1030.000739
ORF1ab/nsp4417L417LctGctT50179AY.1030.00031
ORF1ab/nsp4417L417LctGctA10179AY.1030.000062
ORF1ab/nsp4417L417LCtgTtg171171B.1.6260.977143
ORF1ab/nsp4417L417LCtgTtg159163AY.460.016549
ORF1ab/nsp4417L417LctGctT4163AY.460.000416
ORF1ab/nsp4417L417LCtgTtg136143AY.60.005593
ORF1ab/nsp4417L417LctGctA4143AY.60.000165
ORF1ab/nsp4417L417LctGctT3143AY.60.000123
ORF1ab/nsp4417L417LCtgTtg130130B.1.6100.460993
ORF1ab/nsp4417L417LctGctT115126B.1.2430.008002
ORF1ab/nsp4417L417LCtgTtg11126B.1.2430.000765
ORF1ab/nsp4417L417LctGctT115115W.11
ORF1ab/nsp4417L417LCtgTtg109114B.1.438.10.011692
ORF1ab/nsp4417L417LctGctT5114B.1.438.10.000536
ORF1ab/nsp4417L417LctGctT86109AY.420.00346
ORF1ab/nsp4417L417LCtgTtg19109AY.420.000764
ORF1ab/nsp4417L417LctGctA3109AY.420.000121
ORF1ab/nsp4417L417LctGctC1109AY.420.00004
ORF1ab/nsp4417L417LCtgTtg6094AY.30.000597
ORF1ab/nsp4417L417LctGctT3094AY.30.000298
ORF1ab/nsp4417L417LctGctA494AY.30.00004
ORF1ab/nsp4417L417LCtgTtg9292AY.46.20.05845
ORF1ab/nsp4417L417LCtgTtg4786B.1.10.000853
ORF1ab/nsp4417L417LctGctT3386B.1.10.000599
ORF1ab/nsp4417L417LctGctA686B.1.10.000109
ORF1ab/nsp4417L417LctGctT8082AY.740.009252
ORF1ab/nsp4417L417LCtgTtg282AY.740.000231
ORF1ab/nsp4417L417LCtgTtg5382B.1.4270.002676
ORF1ab/nsp4417L417LctGctT2782B.1.4270.001363
ORF1ab/nsp4417L417LctGctA282B.1.4270.000101
ORF1ab/nsp4417L417LCtgTtg7575B.1.177.600.016383
ORF1ab/nsp4417L417LCtgTtg5968AY.290.000931
ORF1ab/nsp4417L417LctGctT968AY.290.000142
ORF1ab/nsp4417L417LctGctT5767B.1.6370.004165
ORF1ab/nsp4417L417LCtgTtg1067B.1.6370.000731
ORF1ab/nsp4417L417LCtgTtg5564B.1.5260.001293
ORF1ab/nsp4417L417LctGctT764B.1.5260.000165
ORF1ab/nsp4417L417LctGctA264B.1.5260.000047
ORF1ab/nsp4417L417LctGctT4162AY.980.003239
ORF1ab/nsp4417L417LCtgTtg2162AY.980.001659
ORF1ab/nsp4417L417LCtgTtg3860B.1.1.5190.001509
ORF1ab/nsp4417L417LctGctT2260B.1.1.5190.000874
ORF1ab/nsp4417L417LctGctT4860B.1.1600.001497
ORF1ab/nsp4417L417LCtgTtg1260B.1.1600.000374
ORF1ab/nsp4417L417LCtgTtg5357AY.330.003539
ORF1ab/nsp4417L417LctGctT457AY.330.000267
ORF1ab/nsp4417L417LctGctT5053B.1.258.160.081833
ORF1ab/nsp4417L417LCtgTtg353B.1.258.160.00491
ORF1ab/nsp4417L417LctGctT3352B.1.5960.002876
ORF1ab/nsp4417L417LCtgTtg1952B.1.5960.001656
ORF1ab/nsp4417L417LCtgTtg4551B.1.6210.003983
ORF1ab/nsp4417L417LctGctT651B.1.6210.000531
ORF1ab/nsp4417L417LctGctT3250AY.750.001793
ORF1ab/nsp4417L417LCtgTtg1650AY.750.000896
ORF1ab/nsp4417L417LctGctA250AY.750.000112
ORF1ab/nsp4417L417LctGctT3649AY.610.003772
ORF1ab/nsp4417L417LCtgTtg1349AY.610.001362
ORF1ab/nsp4417L417LctGctT3746B.1.1.3170.015233
ORF1ab/nsp4417L417LCtgTtg946B.1.1.3170.003705
ORF1ab/nsp4417L417LCtgTtg4146B.1.1.500.027834
ORF1ab/nsp4417L417LctGctT546B.1.1.500.003394
ORF1ab/nsp4417L417LCtgTtg4444B.1.1.2220.008976
ORF1ab/nsp4417L417LCtgTtg4242B.1.177.750.043704
ORF1ab/nsp4417L417LCtgTtg2842P.20.005226
ORF1ab/nsp4417L417LctGctA842P.20.001493
ORF1ab/nsp4417L417LctGctT642P.20.00112
ORF1ab/nsp4417L417LCtgTtg3340AY.200.001283
ORF1ab/nsp4417L417LctGctT540AY.200.000194
ORF1ab/nsp4417L417LctGctA240AY.200.000078
ORF1ab/nsp4417L417LctGctT3740R.10.00333
ORF1ab/nsp4417L417LCtgTtg340R.10.00027
ORF1ab/nsp4417L417LCtgTtg3939AY.1060.013061
ORF1ab/nsp4417L417LCtgTtg1836AY.1190.000636
ORF1ab/nsp4417L417LctGctT1736AY.1190.0006
ORF1ab/nsp4417L417LctGctA136AY.1190.000035
ORF1ab/nsp4417L417LctGctT3334AY.7.20.018456
ORF1ab/nsp4417L417LCtgTtg134AY.7.20.000559
ORF1ab/nsp4417L417LCtgTtg3434B.1.5990.124088
ORF1ab/nsp4417L417LctGctT2033AY.260.000566
ORF1ab/nsp4417L417LCtgTtg1233AY.260.00034
ORF1ab/nsp4417L417LctGctA133AY.260.000028
ORF1ab/nsp4417L417LCtgTtg2931B.1.1.1890.043873
ORF1ab/nsp4417L417LctGctT231B.1.1.1890.003026
ORF1ab/nsp4417L417LCtgTtg3030B.1.351.50.017986
ORF1ab/nsp4417L417LCtgTtg2029AY.1000.00092
ORF1ab/nsp4417L417LctGctT729AY.1000.000322
ORF1ab/nsp4417L417LctGctA129AY.1000.000046
ORF1ab/nsp4417L417LctGctC129AY.1000.000046
ORF1ab/nsp4417L417LCtgTtg2227AY.4.20.000477
ORF1ab/nsp4417L417LctGctT527AY.4.20.000108
ORF1ab/nsp4417L417LCtgTtg2326AY.39.10.000911
ORF1ab/nsp4417L417LctGctT326AY.39.10.000119
ORF1ab/nsp4417L417LctGctT2325AY.360.003409
ORF1ab/nsp4417L417LCtgTtg225AY.360.000296
ORF1ab/nsp4417L417LCtgTtg2424B.1.5320.149068
ORF1ab/nsp4417L417LctGctT1323B.1.360.001897
ORF1ab/nsp4417L417LCtgTtg1023B.1.360.001459
ORF1ab/nsp4417L417LCtgTtg2222B.1.3540.956522
ORF1ab/nsp4417L417LCtgTtg1621AY.50.00033
ORF1ab/nsp4417L417LctGctC321AY.50.000062
ORF1ab/nsp4417L417LctGctT121AY.50.000021
ORF1ab/nsp4417L417LctGctA121AY.50.000021
ORF1ab/nsp4417L417LCtgTtg1420AY.470.000435
ORF1ab/nsp4417L417LctGctT520AY.470.000156
ORF1ab/nsp4417L417LctGctA120AY.470.000031
ORF1ab/nsp4417L417LCtgTtg1820B.1.2210.001279
ORF1ab/nsp4417L417LctGctT220B.1.2210.000142
ORF1ab/nsp4417L417LCtgTtg1619AY.1200.000595
ORF1ab/nsp4417L417LctGctT319AY.1200.000112
ORF1ab/nsp4417L417LCtgTtg1819P.1.170.002912
ORF1ab/nsp4417L417LctGctT119P.1.170.000162
ORF1ab/nsp4417L417LCtgTtg1919Q.70.021111
ORF1ab/nsp4417L417LCtgTtg1118AY.1170.00093
ORF1ab/nsp4417L417LctGctT718AY.1170.000592
ORF1ab/nsp4417L417LctGctT1818B.1.110.30.012931
ORF1ab/nsp4417L417LctGctT1818B.1.258.220.048
ORF1ab/nsp4417L417LctGctT1117AY.9.20.000404
ORF1ab/nsp4417L417LCtgTtg617AY.9.20.00022
ORF1ab/nsp4417L417LCtgTtg1217C.370.001393
ORF1ab/nsp4417L417LctGctT417C.370.000464
ORF1ab/nsp4417L417LctGctA117C.370.000116
ORF1ab/nsp4417L417LCtgTtg915AY.230.000628
ORF1ab/nsp4417L417LctGctT415AY.230.000279
ORF1ab/nsp4417L417LctGctA215AY.230.000139
ORF1ab/nsp4417L417LCtgTtg1414AY.860.011618
ORF1ab/nsp4417L417LctGctT1414AY.920.004022
ORF1ab/nsp4417L417LctGctA1414B.1.221.40.058333
ORF1ab/nsp4417L417LctGctA814B.1.5750.002427
ORF1ab/nsp4417L417LCtgTtg514B.1.5750.001517
ORF1ab/nsp4417L417LctGctT114B.1.5750.000303
ORF1ab/nsp4417L417LCtgTtg1314P.1.70.004151
ORF1ab/nsp4417L417LctGctT114P.1.70.000319
ORF1ab/nsp4417L417LCtgTtg913AY.450.001095
ORF1ab/nsp4417L417LctGctT413AY.450.000487
ORF1ab/nsp4417L417LctGctT712AY.4.50.000752
ORF1ab/nsp4417L417LCtgTtg512AY.4.50.000537
ORF1ab/nsp4417L417LctGctT812AY.46.60.000578
ORF1ab/nsp4417L417LCtgTtg412AY.46.60.000289
ORF1ab/nsp4417L417LCtgTtg912B.1.1.2160.008014
ORF1ab/nsp4417L417LctGctT312B.1.1.2160.002671
ORF1ab/nsp4417L417LCtgTtg912B.1.5250.001018
ORF1ab/nsp4417L417LctGctT312B.1.5250.000339
ORF1ab/nsp4417L417LCtgTtg611AY.590.003178
ORF1ab/nsp4417L417LctGctT511AY.590.002648
ORF1ab/nsp4417L417LctGctT711B.1.1.4340.00244
ORF1ab/nsp4417L417LCtgTtg411B.1.1.4340.001394
ORF1ab/nsp4417L417LCtgTtg1011P.1.140.000478
ORF1ab/nsp4417L417LctGctT111P.1.140.000048
ORF1ab/nsp4417L417LctGctT510AY.1140.001156
ORF1ab/nsp4417L417LCtgTtg510AY.1140.001156
ORF1ab/nsp4417L417LctGctT510AY.1160.001434
ORF1ab/nsp4417L417LCtgTtg310AY.1160.00086
ORF1ab/nsp4417L417LctGctA210AY.1160.000574
ORF1ab/nsp4417L417LCtgTtg910AY.930.002458
ORF1ab/nsp4417L417LctGctT110AY.930.000273
ORF1ab/nsp4417L417LCtgTtg610B.1.5610.002382
ORF1ab/nsp4417L417LctGctT310B.1.5610.001191
ORF1ab/nsp4417L417LctGctA110B.1.5610.000397
ORF1ab/nsp4417L417LctGctT89AY.140.000704
ORF1ab/nsp4417L417LCtgTtg19AY.140.000088
ORF1ab/nsp4417L417LCtgTtg99AY.39.20.013867
ORF1ab/nsp4417L417LCtgTtg99AY.730.005988
ORF1ab/nsp4417L417LCtgTtg99B.1.1.4160.008145
ORF1ab/nsp4417L417LctGctT69B.1.2580.000399
ORF1ab/nsp4417L417LCtgTtg39B.1.2580.0002
ORF1ab/nsp4417L417LCtgTtg79B.1.5950.001827
ORF1ab/nsp4417L417LctGctA19B.1.5950.000261
ORF1ab/nsp4417L417LctGctT19B.1.5950.000261
ORF1ab/nsp4417L417LctGctT89N.50.014134
ORF1ab/nsp4417L417LCtgTtg19N.50.001767
ORF1ab/nsp4417L417LctGctT380.166667
ORF1ab/nsp4417L417LCtgTtg380.166667
ORF1ab/nsp4417L417LctGctA180.055556
ORF1ab/nsp4417L417LCtGTtA180.055556
ORF1ab/nsp4417L417LCtgTtg68A.2.50.002994
ORF1ab/nsp4417L417LctGctT28A.2.50.000998
ORF1ab/nsp4417L417LCtgTtg88AY.270.000518
ORF1ab/nsp4417L417LCtgTtg58AY.3.10.000426
ORF1ab/nsp4417L417LctGctT38AY.3.10.000256
ORF1ab/nsp4417L417LctGctT78AY.340.000679
ORF1ab/nsp4417L417LCtgTtg18AY.340.000097
ORF1ab/nsp4417L417LCtgTtg48AY.380.001997
ORF1ab/nsp4417L417LctGctT48AY.380.001997
ORF1ab/nsp4417L417LctGctT68AY.98.10.000291
ORF1ab/nsp4417L417LCtgTtg28AY.98.10.000097
ORF1ab/nsp4417L417LctGctT68B.1.5170.002562
ORF1ab/nsp4417L417LCtgTtg28B.1.5170.000854
ORF1ab/nsp4417L417LctGctA88B.1.5370.16
ORF1ab/nsp4417L417LCtgTtg68B.1.617.10.000774
ORF1ab/nsp4417L417LctGctT28B.1.617.10.000258
ORF1ab/nsp4417L417LctGctT47AY.540.000381
ORF1ab/nsp4417L417LCtgTtg37AY.540.000286
ORF1ab/nsp4417L417LCtgTtg77AY.9.10.000586
ORF1ab/nsp4417L417LctGctT47AY.99.20.000369
ORF1ab/nsp4417L417LCtgTtg37AY.99.20.000276
ORF1ab/nsp4417L417LctGctT57B.1.1.10.001633
ORF1ab/nsp4417L417LCtgTtg27B.1.1.10.000653
ORF1ab/nsp4417L417LctGctA67B.1.1.3260.010563
ORF1ab/nsp4417L417LCtgTtg17B.1.1.3260.001761
ORF1ab/nsp4417L417LctGctT77B.1.2100.014925
ORF1ab/nsp4417L417LctGctT77B.1.36.360.004214
ORF1ab/nsp4417L417LCtgTtg77B.1.3960.00494
ORF1ab/nsp4417L417LctGctT47B.1.4000.001716
ORF1ab/nsp4417L417LCtgTtg37B.1.4000.001287
ORF1ab/nsp4417L417LCtgTtg57B.1.4990.005252
ORF1ab/nsp4417L417LctGctT27B.1.4990.002101
ORF1ab/nsp4417L417LCtgTtg77Q.80.001154
ORF1ab/nsp4417L417LCtgTtg66AY.1080.006615
ORF1ab/nsp4417L417LctGctT46AY.16.10.00188
ORF1ab/nsp4417L417LCtgTtg26AY.16.10.00094
ORF1ab/nsp4417L417LCtgTtg66AY.46.40.000987
ORF1ab/nsp4417L417LctGctT46AY.690.000747
ORF1ab/nsp4417L417LCtgTtg26AY.690.000373
ORF1ab/nsp4417L417LCtgTtg36AY.710.001425
ORF1ab/nsp4417L417LctGctT36AY.710.001425
ORF1ab/nsp4417L417LctGctA66B.1.1.2630.009346
ORF1ab/nsp4417L417LCtgTtg36B.1.1.2840.000322
ORF1ab/nsp4417L417LctGctT36B.1.1.2840.000322
ORF1ab/nsp4417L417LCtgTtg66B.1.258.170.000624
ORF1ab/nsp4417L417LctGctT46B.1.36.10.004561
ORF1ab/nsp4417L417LCtgTtg26B.1.36.10.002281
ORF1ab/nsp4417L417LCtgTtg56B.1.36.290.002587
ORF1ab/nsp4417L417LctGctT16B.1.36.290.000517
ORF1ab/nsp4417L417LCtgTtg46B.1.3690.001141
ORF1ab/nsp4417L417LctGctT26B.1.3690.00057
ORF1ab/nsp4417L417LctGctA66B.1.5680.006667
ORF1ab/nsp4417L417LctGctA56B.1.6230.002682
ORF1ab/nsp4417L417LctGctT16B.1.6230.000536
ORF1ab/nsp4417L417LCtgTtg66D.20.00045
ORF1ab/nsp4417L417LCtgTtg45AY.10.001583
ORF1ab/nsp4417L417LctGctT15AY.10.000396
ORF1ab/nsp4417L417LctGctT45AY.1110.000733
ORF1ab/nsp4417L417LCtgTtg15AY.1110.000183
ORF1ab/nsp4417L417LctGctT25AY.1180.000125
ORF1ab/nsp4417L417LCtgTtg25AY.1180.000125
ORF1ab/nsp4417L417LctGctA15AY.1180.000063
ORF1ab/nsp4417L417LCtgTtg35B.1.1.280.000934
ORF1ab/nsp4417L417LctGctT25B.1.1.280.000622
ORF1ab/nsp4417L417LCtgTtg55B.1.36.180.002101
ORF1ab/nsp4417L417LCtgTtg55B.1.5650.004052
ORF1ab/nsp4417L417LctGctA25B.1.5820.000981
ORF1ab/nsp4417L417LctGctT25B.1.5820.000981
ORF1ab/nsp4417L417LCtgTtg15B.1.5820.000491
ORF1ab/nsp4417L417LCtgTtg45B.1.6250.009412
ORF1ab/nsp4417L417LctGctT15B.1.6250.002353
ORF1ab/nsp4417L417LCtgTtg55C.310.089286
ORF1ab/nsp4417L417LCtgTtg24AD.20.000438
ORF1ab/nsp4417L417LctGctT24AD.20.000438
ORF1ab/nsp4417L417LCtgTtg34AY.5.30.001012
ORF1ab/nsp4417L417LctGctT14AY.5.30.000337
ORF1ab/nsp4417L417LCtgTtg44AY.630.001547
ORF1ab/nsp4417L417LctGctT44AY.720.005442
ORF1ab/nsp4417L417LCtgTtg44AY.75.10.000721
ORF1ab/nsp4417L417LCtgTtg34AY.90.000203
ORF1ab/nsp4417L417LctGctT14AY.90.000068
ORF1ab/nsp4417L417LCtgTtg44B.1.177.520.00703
ORF1ab/nsp4417L417LCtgTtg44B.1.2060.003263
ORF1ab/nsp4417L417LctGctT44B.1.2230.011111
ORF1ab/nsp4417L417LCtgTtg44B.1.2340.000528
ORF1ab/nsp4417L417LCtgTtg34B.1.351.20.000908
ORF1ab/nsp4417L417LctGctT14B.1.351.20.000303
ORF1ab/nsp4417L417LCtgTtg44B.1.36.80.004
ORF1ab/nsp4417L417LCtgTtg44B.60.00364
ORF1ab/nsp4417L417LCtgTtg44C.360.003643
ORF1ab/nsp4417L417LCtgTtg44N.40.017021
ORF1ab/nsp4417L417LctGctT34Q.10.000379
ORF1ab/nsp4417L417LCtgTtg14Q.10.000126
ORF1ab/nsp4417L417LCtgTtg23AY.1050.001286
ORF1ab/nsp4417L417LctGctT13AY.1050.000643
ORF1ab/nsp4417L417LCtgTtg23AY.1130.000285
ORF1ab/nsp4417L417LctGctT13AY.1130.000142
ORF1ab/nsp4417L417LCtgTtg23AY.1210.000271
ORF1ab/nsp4417L417LctGctT13AY.1210.000135
ORF1ab/nsp4417L417LCtgTtg33AY.190.003421
ORF1ab/nsp4417L417LctGctT23AY.220.004184
ORF1ab/nsp4417L417LCtgTtg13AY.220.002092
ORF1ab/nsp4417L417LCtgTtg33AY.370.000948
ORF1ab/nsp4417L417LCtgTtg33AY.510.002727
ORF1ab/nsp4417L417LctGctT23AY.99.10.003106
ORF1ab/nsp4417L417LCtgTtg13AY.99.10.001553
ORF1ab/nsp4417L417LCtgTtg33B.1.1.1530.003286
ORF1ab/nsp4417L417LCtgTtg23B.1.1.1760.000879
ORF1ab/nsp4417L417LctGctA13B.1.1.1760.000439
ORF1ab/nsp4417L417LCtgTtg33B.1.1.2070.003546
ORF1ab/nsp4417L417LCtgTtg23B.1.1.3480.001592
ORF1ab/nsp4417L417LctGctA13B.1.1.3480.000796
ORF1ab/nsp4417L417LCtgTtg33B.1.1.4860.004732
ORF1ab/nsp4417L417LctGctT23B.1.1460.008475
ORF1ab/nsp4417L417LCtgTtg13B.1.1460.004237
ORF1ab/nsp4417L417LctGctT33B.1.177.450.001144
ORF1ab/nsp4417L417LCtgTtg33B.1.177.830.004444
ORF1ab/nsp4417L417LCtgTtg23B.1.2410.001623
ORF1ab/nsp4417L417LctGctT13B.1.2410.000812
ORF1ab/nsp4417L417LCtgTtg23B.1.3110.000549
ORF1ab/nsp4417L417LctGctT13B.1.3110.000275
ORF1ab/nsp4417L417LCtgTtg33B.1.440.025
ORF1ab/nsp4417L417LCtgTtg33B.1.466.20.001174
ORF1ab/nsp4417L417LctGctT33B.1.5880.00273
ORF1ab/nsp4417L417LctGctA33B.1.6090.001438
ORF1ab/nsp4417L417LctGctT23C.160.002121
ORF1ab/nsp4417L417LCtgTtg13C.160.00106
ORF1ab/nsp4417L417LCtgTtg23C.350.001548
ORF1ab/nsp4417L417LctGctT13C.350.000774
ORF1ab/nsp4417L417LctGctA23P.1.100.000539
ORF1ab/nsp4417L417LctGctT13P.1.100.000269
ORF1ab/nsp4417L417LCtgTtg13P.1.150.000232
ORF1ab/nsp4417L417LctGctA13P.1.150.000232
ORF1ab/nsp4417L417LctGctT13P.1.150.000232
ORF1ab/nsp4417L417LctGctT22A.290.010638
ORF1ab/nsp4417L417LctGctT22AY.130.000322
ORF1ab/nsp4417L417LCtgTtg22AY.160.000759
ORF1ab/nsp4417L417LCtgTtg22AY.29.10.000441
ORF1ab/nsp4417L417LCtgTtg22AY.34.10.00102
ORF1ab/nsp4417L417LCtgTtg22AY.350.000466
ORF1ab/nsp4417L417LCtgTtg22AY.4.10.001475
ORF1ab/nsp4417L417LCtgTtg22AY.4.2.10.000298
ORF1ab/nsp4417L417LCtgTtg22AY.410.000588
ORF1ab/nsp4417L417LCtgTtg22AY.46.30.001867
ORF1ab/nsp4417L417LctGctA22AY.480.00093
ORF1ab/nsp4417L417LctGctT12AY.530.000288
ORF1ab/nsp4417L417LctGctA12AY.530.000288
ORF1ab/nsp4417L417LCtgTtg22AY.580.001815
ORF1ab/nsp4417L417LctGctT22AY.600.001876
ORF1ab/nsp4417L417LCtgTtg22AY.620.000871
ORF1ab/nsp4417L417LctGctT22AY.7.10.000225
ORF1ab/nsp4417L417LctGctT22AY.790.002421
ORF1ab/nsp4417L417LCtgTtg22AY.830.003448
ORF1ab/nsp4417L417LctGctT12AY.840.000437
ORF1ab/nsp4417L417LCtgTtg12AY.840.000437
ORF1ab/nsp4417L417LctGctT22AY.880.001768
ORF1ab/nsp4417L417LctGctC22AY.900.001369
ORF1ab/nsp4417L417LCtgTtg22B0.000256
ORF1ab/nsp4417L417LCtgTtg22B.1.1.100.00223
ORF1ab/nsp4417L417LCtgTtg22B.1.1.1570.001826
ORF1ab/nsp4417L417LCtgTtg22B.1.1.1590.009346
ORF1ab/nsp4417L417LCtgTtg22B.1.1.1980.002937
ORF1ab/nsp4417L417LctGctT22B.1.1.2340.024096
ORF1ab/nsp4417L417LCtgTtg12B.1.1.250.000569
ORF1ab/nsp4417L417LctGctT12B.1.1.250.000569
ORF1ab/nsp4417L417LctGctT22B.1.1.3060.000877
ORF1ab/nsp4417L417LctGctT12B.1.1.3180.000302
ORF1ab/nsp4417L417LCtgTtg12B.1.1.3180.000302
ORF1ab/nsp4417L417LctGctT12B.1.1.3220.008772
ORF1ab/nsp4417L417LCtgTtg12B.1.1.3220.008772
ORF1ab/nsp4417L417LCtgTtg22B.1.1.330.000842
ORF1ab/nsp4417L417LCtgTtg12B.1.1.3510.002793
ORF1ab/nsp4417L417LctGctT12B.1.1.3510.002793
ORF1ab/nsp4417L417LCtgTtg22B.1.1.3580.068966
ORF1ab/nsp4417L417LCtgTtg12B.1.1.370.000193
ORF1ab/nsp4417L417LctGctT12B.1.1.370.000193
ORF1ab/nsp4417L417LCtgTtg22B.1.1.3890.012121
ORF1ab/nsp4417L417LCtgTtg22B.1.1.4220.090909
ORF1ab/nsp4417L417LctGctT22B.1.1.5260.007092
ORF1ab/nsp4417L417LCtgTtg22B.1.160.80.002577
ORF1ab/nsp4417L417LCtgTtg12B.1.177.210.000076
ORF1ab/nsp4417L417LctGctT12B.1.177.210.000076
ORF1ab/nsp4417L417LCtgTtg22B.1.177.440.001038
ORF1ab/nsp4417L417LctGctA22B.1.177.500.00939
ORF1ab/nsp4417L417LCtgTtg12B.1.177.810.000189
ORF1ab/nsp4417L417LctGctT12B.1.177.810.000189
ORF1ab/nsp4417L417LCtgTtg22B.1.177.860.000367
ORF1ab/nsp4417L417LCtgTtg22B.1.2320.001075
ORF1ab/nsp4417L417LctGctT22B.1.2360.004107
ORF1ab/nsp4417L417LctGctT12B.1.2390.001221
ORF1ab/nsp4417L417LCtgTtg12B.1.2390.001221
ORF1ab/nsp4417L417LCtgTtg12B.1.2400.000216
ORF1ab/nsp4417L417LctGctT12B.1.2400.000216
ORF1ab/nsp4417L417LCtgTtg22B.1.258.140.001961
ORF1ab/nsp4417L417LctGctT22B.1.3420.2
ORF1ab/nsp4417L417LctGctT22B.1.36.170.000988
ORF1ab/nsp4417L417LctGctT22B.1.36.220.002415
ORF1ab/nsp4417L417LctGctT22B.1.36.70.008
ORF1ab/nsp4417L417LCtgTtg22B.1.3890.002004
ORF1ab/nsp4417L417LCtgTtg22B.1.4090.001563
ORF1ab/nsp4417L417LctGctT22B.1.416.10.003125
ORF1ab/nsp4417L417LCtgTtg22B.1.4700.002809
ORF1ab/nsp4417L417LCtgTtg22B.1.5510.002581
ORF1ab/nsp4417L417LctGctA22B.1.5640.000852
ORF1ab/nsp4417L417LCtgTtg22B.1.6280.000705
ORF1ab/nsp4417L417LCtgTtg22B.1.6310.006734
ORF1ab/nsp4417L417LCtgTtg22C.1.20.008511
ORF1ab/nsp4417L417LCtgTtg12C.36.30.000567
ORF1ab/nsp4417L417LctGctC12C.36.30.000567
ORF1ab/nsp4417L417LCtgTtg22P.1.120.000968
ORF1ab/nsp4417L417LCtgTtg22P.1.17.10.00175
ORF1ab/nsp4417L417LCtgTtg22P.30.00319
ORF1ab/nsp4417L417LCtgTtg22Q.30.00029
ORF1ab/nsp4417L417LCtgTtg11A.10.000282
ORF1ab/nsp4417L417LCtgTtg11A.190.009434
ORF1ab/nsp4417L417LCtgTtg11A.20.000662
ORF1ab/nsp4417L417LCtgTtg11A.23.10.000704
ORF1ab/nsp4417L417LCtgTtg11A.270.001656
ORF1ab/nsp4417L417LCtgTtg11AU.10.001266
ORF1ab/nsp4417L417LctGctA11AU.30.00211
ORF1ab/nsp4417L417LCtgTtg11AY.1100.000113
ORF1ab/nsp4417L417LCtgTtg11AY.120.10.000321
ORF1ab/nsp4417L417LCtgTtg11AY.23.10.000417
ORF1ab/nsp4417L417LctGctA11AY.240.000431
ORF1ab/nsp4417L417LCtgTtg11AY.4.40.000409
ORF1ab/nsp4417L417LctGctT11AY.5.40.000277
ORF1ab/nsp4417L417LCtgTtg11AY.570.000656
ORF1ab/nsp4417L417LCtgTtg11AY.640.000595
ORF1ab/nsp4417L417LCtgTtg11AY.680.000274
ORF1ab/nsp4417L417LCtgTtg11AY.700.000209
ORF1ab/nsp4417L417LCtgTtg11AY.800.001129
ORF1ab/nsp4417L417LCtgTtg11AY.820.001357
ORF1ab/nsp4417L417LCtgTtg11AY.850.000427
ORF1ab/nsp4417L417LctGctT11AY.9.2.10.001976
ORF1ab/nsp4417L417LctGctT11AY.910.00073
ORF1ab/nsp4417L417LCtgTtg11AY.91.10.004065
ORF1ab/nsp4417L417LCtgTtg11AY.990.001049
ORF1ab/nsp4417L417LCtgTtg11B.1.1.1280.007092
ORF1ab/nsp4417L417LCtgTtg11B.1.1.1740.003378
ORF1ab/nsp4417L417LctGctT11B.1.1.2250.007194
ORF1ab/nsp4417L417LCtgTtg11B.1.1.2410.00207
ORF1ab/nsp4417L417LCtgTtg11B.1.1.2580.003257
ORF1ab/nsp4417L417LctGctT11B.1.1.2650.003155
ORF1ab/nsp4417L417LctGctA11B.1.1.2850.006536
ORF1ab/nsp4417L417LCtgTtg11B.1.1.2940.001266
ORF1ab/nsp4417L417LCtgTtg11B.1.1.2990.012195
ORF1ab/nsp4417L417LCtgTtg11B.1.1.3050.003861
ORF1ab/nsp4417L417LCtgTtg11B.1.1.3290.003846
ORF1ab/nsp4417L417LctGctT11B.1.1.3330.001076
ORF1ab/nsp4417L417LCtgTtg11B.1.1.3440.010753
ORF1ab/nsp4417L417LctGctT11B.1.1.3490.010309
ORF1ab/nsp4417L417LctGctA11B.1.1.3550.015385
ORF1ab/nsp4417L417LctGctT11B.1.1.3720.000689
ORF1ab/nsp4417L417LctGctT11B.1.1.3750.011905
ORF1ab/nsp4417L417LctGctT11B.1.1.390.00051
ORF1ab/nsp4417L417LCtgTtg11B.1.1.4100.037037
ORF1ab/nsp4417L417LCtgTtg11B.1.1.4190.007407
ORF1ab/nsp4417L417LCtgTtg11B.1.1.440.00241
ORF1ab/nsp4417L417LCtgTtg11B.1.1.4480.002033
ORF1ab/nsp4417L417LCtgTtg11B.1.1.4670.019231
ORF1ab/nsp4417L417LCtgTtg11B.1.1.5120.028571
ORF1ab/nsp4417L417LCtgTtg11B.1.1.5230.001563
ORF1ab/nsp4417L417LCtgTtg11B.1.1.5250.005464
ORF1ab/nsp4417L417LCtgTtg11B.1.1.560.017857
ORF1ab/nsp4417L417LCtgTtg11B.1.1.670.004566
ORF1ab/nsp4417L417LCtgTtg11B.1.1.700.000341
ORF1ab/nsp4417L417LCtgTtg11B.1.1.710.006061
ORF1ab/nsp4417L417LctGctA11B.1.1.750.010638
ORF1ab/nsp4417L417LctGctA11B.1.1.930.025641
ORF1ab/nsp4417L417LCtgTtg11B.1.1050.009615
ORF1ab/nsp4417L417LctGctT11B.1.1110.001175
ORF1ab/nsp4417L417LCtgTtg11B.1.1420.002899
ORF1ab/nsp4417L417LctGctT11B.1.160.100.008065
ORF1ab/nsp4417L417LctGctA11B.1.177.120.000152
ORF1ab/nsp4417L417LCtgTtg11B.1.177.200.001517
ORF1ab/nsp4417L417LCtgTtg11B.1.177.230.003236
ORF1ab/nsp4417L417LCtgTtg11B.1.177.310.011494
ORF1ab/nsp4417L417LCtgTtg11B.1.177.40.000211
ORF1ab/nsp4417L417LCtgTtg11B.1.177.430.001477
ORF1ab/nsp4417L417LCtgTtg11B.1.177.460.000918
ORF1ab/nsp4417L417LctGctT11B.1.177.480.003125
ORF1ab/nsp4417L417LCtgTtg11B.1.177.540.000606
ORF1ab/nsp4417L417LctGctT11B.1.177.570.000281
ORF1ab/nsp4417L417LctGctT11B.1.177.70.000165
ORF1ab/nsp4417L417LCtgTtg11B.1.177.870.000728
ORF1ab/nsp4417L417LctGctT11B.1.1790.003759
ORF1ab/nsp4417L417LCtgTtg11B.1.1870.033333
ORF1ab/nsp4417L417LCtgTtg11B.1.1920.009259
ORF1ab/nsp4417L417LCtgTtg11B.1.2190.009434
ORF1ab/nsp4417L417LCtgTtg11B.1.220.001318
ORF1ab/nsp4417L417LctGctT11B.1.221.20.004016
ORF1ab/nsp4417L417LctGctT11B.1.2350.002519
ORF1ab/nsp4417L417LctGctT11B.1.2600.003344
ORF1ab/nsp4417L417LCtgTtg11B.1.2790.000514
ORF1ab/nsp4417L417LctGctT11B.1.2980.002114
ORF1ab/nsp4417L417LctGctA11B.1.30.002618
ORF1ab/nsp4417L417LctGctT11B.1.3200.001245
ORF1ab/nsp4417L417LctGctT11B.1.3240.001605
ORF1ab/nsp4417L417LctGctA11B.1.3490.000715
ORF1ab/nsp4417L417LctGctC11B.1.351.30.000876
ORF1ab/nsp4417L417LCtgTtg11B.1.36.270.000763
ORF1ab/nsp4417L417LCtgTtg11B.1.36.310.001751
ORF1ab/nsp4417L417LctGctT11B.1.36.350.002604
ORF1ab/nsp4417L417LctGctA11B.1.36.380.001642
ORF1ab/nsp4417L417LCtgTtg11B.1.3670.000792
ORF1ab/nsp4417L417LCtgTtg11B.1.3950.007042
ORF1ab/nsp4417L417LctGctT11B.1.4010.008197
ORF1ab/nsp4417L417LCtgTtg11B.1.4040.001302
ORF1ab/nsp4417L417LCtgTtg11B.1.4220.000812
ORF1ab/nsp4417L417LctGctT11B.1.4260.001009
ORF1ab/nsp4417L417LctGctT11B.1.4530.003236
ORF1ab/nsp4417L417LCtgTtg11B.1.4560.003268
ORF1ab/nsp4417L417LCtgTtg11B.1.4650.003802
ORF1ab/nsp4417L417LctGctT11B.1.4730.019231
ORF1ab/nsp4417L417LCtgTtg11B.1.5240.001406
ORF1ab/nsp4417L417LCtgTtg11B.1.564.10.001577
ORF1ab/nsp4417L417LCtgTtg11B.1.575.10.002439
ORF1ab/nsp4417L417LCtgTtg11B.1.5930.01087
ORF1ab/nsp4417L417LCtgTtg11B.1.5970.00463
ORF1ab/nsp4417L417LCtgTtg11B.1.6030.010638
ORF1ab/nsp4417L417LctGctT11B.1.621.10.000506
ORF1ab/nsp4417L417LCtgTtg11B.30.000831
ORF1ab/nsp4417L417LctGctT11B.300.014706
ORF1ab/nsp4417L417LctGctT11B.6.60.000889
ORF1ab/nsp4417L417LCtgTtg11C.36.10.004149
ORF1ab/nsp4417L417LCtgTtg11C.36.3.10.002717
ORF1ab/nsp4417L417LCtgTtg11C.37.10.002618
ORF1ab/nsp4417L417LCtgTtg11C.390.018868
ORF1ab/nsp4417L417LCtgTtg11L.30.003546
ORF1ab/nsp4417L417LctGctA11N.30.005814
ORF1ab/nsp4417L417LctGctT11P.1.10.000318
ORF1ab/nsp4417L417LctGctT11P.1.130.000898
ORF1ab/nsp4417L417LCtgTtg11P.1.160.000374
ORF1ab/nsp4417L417LCtgTtg11Q.40.000455
ORF1ab/nsp4417L417LCtgTtg11U.20.008772

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.