CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 106 | L106F | L2869F | nonsyn | ttG | ttC | 1643 | 837 | 0.509434 | 8870-8872 |
ORF1ab/nsp4 | 106 | L106F | L2869F | nonsyn | ttG | ttT | 1643 | 806 | 0.490566 | 8870-8872 |
Details of the mutation L106F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 837 | 1643 | All | 0.00016 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 806 | 1643 | All | 0.000154 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 768 | 768 | B.1.177.24 | 0.994819 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 138 | 138 | AY.83 | 0.237931 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 96 | 120 | B.1.1.7 | 0.000086 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 24 | 120 | B.1.1.7 | 0.000021 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 60 | 63 | B.1.617.2 | 0.000226 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 3 | 63 | B.1.617.2 | 0.000011 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 51 | 55 | AY.4 | 0.000079 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 4 | 55 | AY.4 | 0.000006 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 40 | 40 | AY.30 | 0.015829 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 34 | 35 | AY.43 | 0.000151 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 35 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 30 | 31 | AY.103 | 0.000186 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 31 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 30 | 31 | AY.44 | 0.000183 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 31 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 25 | 25 | AY.91 | 0.018262 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 21 | 22 | AY.27 | 0.001359 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 22 | AY.27 | 0.000065 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 19 | 19 | B.1.596.1 | 0.17757 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 18 | 18 | B.1.1.284 | 0.001933 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 18 | 18 | P.1 | 0.000284 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 17 | 17 | B.1.1.519 | 0.000675 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 16 | 16 | AY.3 | 0.000159 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 16 | 16 | B.1.1.316 | 0.014801 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 15 | 15 | AY.25 | 0.00009 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 13 | 14 | B.1.2 | 0.000114 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 14 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 7 | 12 | B.1 | 0.000064 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 5 | 12 | B.1 | 0.000046 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 10 | 10 | AY.102 | 0.000265 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 7 | 10 | B.1.177 | 0.000092 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 3 | 10 | B.1.177 | 0.00004 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 9 | 9 | P.1.14 | 0.00043 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 6 | 6 | AY.94 | 0.002656 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 5 | 5 | B.1.588 | 0.00455 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 4 | 4 | AY.1 | 0.001583 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 2 | 4 | AY.4.2 | 0.000043 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 2 | 4 | AY.4.2 | 0.000043 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 4 | 4 | AY.41 | 0.001176 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 3 | 4 | B.1.1 | 0.000054 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 4 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 4 | 4 | B.1.177.32 | 0.005398 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 2 | 3 | AY.26 | 0.000057 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 3 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 2 | 3 | B.1.369 | 0.00057 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 3 | B.1.369 | 0.000285 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 2 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 2 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 2 | AY.16.1 | 0.00047 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 2 | AY.16.1 | 0.00047 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 2 | AY.98 | 0.000079 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 2 | AY.98 | 0.000079 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 2 | 2 | B.1.1.448 | 0.004065 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | B.1.1.340 | 0.045455 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | B.1.595.1 | 0.005848 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp4 | 106 | L106F | ttG | ttC | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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