CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 470 | H470Y | H3233Y | nonsyn | Cat | Tat | 966 | 965 | 0.998965 | 9962-9964 |
ORF1ab/nsp4 | 470 | H470Y | H3233Y | nonsyn | CaT | TaC | 966 | 1 | 0.0010352 | 9962-9964 |
Details of the mutation H470Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 965 | 966 | All | 0.000185 |
ORF1ab/nsp4 | 470 | H470Y | CaT | TaC | 1 | 966 | All | 0 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 333 | 333 | B.1.1.7 | 0.000298 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 64 | 64 | B.43 | 0.914286 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 53 | 53 | AY.4 | 0.000082 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 43 | 43 | B.1.2 | 0.000379 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 38 | 38 | AY.103 | 0.000236 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 37 | 37 | AY.29 | 0.000584 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 36 | 36 | B.1.617.1 | 0.004643 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 29 | 29 | B.1.617.2 | 0.000109 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 27 | 27 | AY.44 | 0.000164 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 27 | 27 | B.1.596 | 0.002353 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 21 | 21 | B.1.595 | 0.00548 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 15 | 15 | B.1 | 0.000137 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 14 | 14 | P.1 | 0.000221 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 13 | 13 | B.1.177 | 0.000171 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 12 | 12 | B.1.525 | 0.001358 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 11 | 11 | AY.46 | 0.001145 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 9 | 9 | B.1.351 | 0.000268 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 8 | 8 | B | 0.001022 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 3 | 3 | B.1.1.10 | 0.003344 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 3 | 3 | B.1.177.37 | 0.081081 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 3 | 3 | B.1.195 | 0.015075 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp4 | 470 | H470Y | CaT | TaC | 1 | 2 | AY.120.1 | 0.000321 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 2 | AY.120.1 | 0.000321 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 2 | 2 | B.1.1.123 | 0.035714 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 2 | 2 | B.1.177.45 | 0.000762 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 2 | 2 | B.42 | 0.066667 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | A.4 | 0.012821 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.1.118 | 0.010204 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.1.82 | 0.038462 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.405 | 0.012346 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.467 | 0.04 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.501 | 0.007353 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.610 | 0.003546 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp4 | 470 | H470Y | Cat | Tat | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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