CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = F390F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4390F390FF3153FsynttCttT6944694419722-9724

Details of the mutation F390F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4390F390FttCttT69446944All0.001328
ORF1ab/nsp4390F390FttCttT32053205B.1.1.70.002869
ORF1ab/nsp4390F390FttCttT341341AY.40.000531
ORF1ab/nsp4390F390FttCttT264264A.2.50.131737
ORF1ab/nsp4390F390FttCttT234234AY.1200.0087
ORF1ab/nsp4390F390FttCttT125125B.1.617.20.000471
ORF1ab/nsp4390F390FttCttT117117B.1.20.00103
ORF1ab/nsp4390F390FttCttT109109B.400.039709
ORF1ab/nsp4390F390FttCttT106106B.1.1.1210.257282
ORF1ab/nsp4390F390FttCttT105105AY.1190.003707
ORF1ab/nsp4390F390FttCttT100100B.1.1770.001317
ORF1ab/nsp4390F390FttCttT9797B.1.10.00176
ORF1ab/nsp4390F390FttCttT8383AY.1030.000515
ORF1ab/nsp4390F390FttCttT7777AY.250.000463
ORF1ab/nsp4390F390FttCttT7474B.10.000678
ORF1ab/nsp4390F390FttCttT7171B.1.1890.304721
ORF1ab/nsp4390F390FttCttT7171B.1.4290.001671
ORF1ab/nsp4390F390FttCttT6464B.1.1.510.109966
ORF1ab/nsp4390F390FttCttT6363P.10.000993
ORF1ab/nsp4390F390FttCttT6262AY.430.000275
ORF1ab/nsp4390F390FttCttT6161B.1.5260.001434
ORF1ab/nsp4390F390FttCttT5959C.370.006848
ORF1ab/nsp4390F390FttCttT5858AY.440.000353
ORF1ab/nsp4390F390FttCttT5757B.1.1.2840.006122
ORF1ab/nsp4390F390FttCttT5454AY.90.00365
ORF1ab/nsp4390F390FttCttT3838B.1.4800.094527
ORF1ab/nsp4390F390FttCttT3434B.1.177.810.006437
ORF1ab/nsp4390F390FttCttT2727B.1.360.003939
ORF1ab/nsp4390F390FttCttT2626AY.260.000736
ORF1ab/nsp4390F390FttCttT2626AY.30.000259
ORF1ab/nsp4390F390FttCttT2626B.1.5250.002942
ORF1ab/nsp4390F390FttCttT2525AY.390.000618
ORF1ab/nsp4390F390FttCttT2525B.1.2430.00174
ORF1ab/nsp4390F390FttCttT2525B.1.258.140.02451
ORF1ab/nsp4390F390FttCttT2525B.1.6151
ORF1ab/nsp4390F390FttCttT2424AY.1210.003248
ORF1ab/nsp4390F390FttCttT2424AY.50.000496
ORF1ab/nsp4390F390FttCttT2424B.1.1.2280.073171
ORF1ab/nsp4390F390FttCttT2323AY.1020.00061
ORF1ab/nsp4390F390FttCttT2323B.1.4270.001161
ORF1ab/nsp4390F390FttCttT2222AY.70.004312
ORF1ab/nsp4390F390FttCttT2222B.1.3510.000654
ORF1ab/nsp4390F390FttCttT2121AY.39.10.000832
ORF1ab/nsp4390F390FttCttT2121AY.9.10.001758
ORF1ab/nsp4390F390FttCttT2121C.36.30.011912
ORF1ab/nsp4390F390FttCttT2020AY.4.20.000434
ORF1ab/nsp4390F390FttCttT2020P.20.003733
ORF1ab/nsp4390F390FttCttT1919B.1.6370.001388
ORF1ab/nsp4390F390FttCttT1818AY.200.0007
ORF1ab/nsp4390F390FttCttT1616AY.1000.000736
ORF1ab/nsp4390F390FttCttT1616B.1.1.1740.054054
ORF1ab/nsp4390F390FttCttT1515AY.230.001046
ORF1ab/nsp4390F390FttCttT1515B.1.1.5190.000596
ORF1ab/nsp4390F390FttCttT1414B.1.1.2140.000776
ORF1ab/nsp4390F390FttCttT1414B.1.2580.000932
ORF1ab/nsp4390F390FttCttT1414B.1.619.10.00898
ORF1ab/nsp4390F390FttCttT1313AY.980.001027
ORF1ab/nsp4390F390FttCttT1313B.1.1600.000405
ORF1ab/nsp4390F390FttCttT1313B.1.177.770.009441
ORF1ab/nsp4390F390FttCttT1313B.1.4740.024715
ORF1ab/nsp4390F390FttCttT1212B.1.4000.005148
ORF1ab/nsp4390F390FttCttT1010AY.60.000411
ORF1ab/nsp4390F390FttCttT1010B.1.5950.00261
ORF1ab/nsp4390F390FttCttT1010N.50.017668
ORF1ab/nsp4390F390FttCttT99B.1.2210.000639
ORF1ab/nsp4390F390FttCttT88B.1.1.1890.012103
ORF1ab/nsp4390F390FttCttT88B.1.1.3160.007401
ORF1ab/nsp4390F390FttCttT88B.1.6210.000708
ORF1ab/nsp4390F390FttCttT88Q.10.001011
ORF1ab/nsp4390F390FttCttT77AY.460.000729
ORF1ab/nsp4390F390FttCttT77B0.000895
ORF1ab/nsp4390F390FttCttT77B.1.177.320.009447
ORF1ab/nsp4390F390FttCttT77B.1.3890.007014
ORF1ab/nsp4390F390FttCttT77P.1.140.000335
ORF1ab/nsp4390F390FttCttT77P.1.70.002235
ORF1ab/nsp4390F390FttCttT66A.190.056604
ORF1ab/nsp4390F390FttCttT66AY.1180.000376
ORF1ab/nsp4390F390FttCttT66AY.330.000401
ORF1ab/nsp4390F390FttCttT66AY.98.10.000291
ORF1ab/nsp4390F390FttCttT66B.1.1.4160.00543
ORF1ab/nsp4390F390FttCttT66B.1.1.5170.040816
ORF1ab/nsp4390F390FttCttT66B.1.177.40.001266
ORF1ab/nsp4390F390FttCttT66B.1.5960.000523
ORF1ab/nsp4390F390FttCttT66B.1.80.011834
ORF1ab/nsp4390F390FttCttT66Q.30.00087
ORF1ab/nsp4390F390FttCttT66Q.80.000989
ORF1ab/nsp4390F390FttCttT55AY.470.000156
ORF1ab/nsp4390F390FttCttT55B.1.1.1530.005476
ORF1ab/nsp4390F390FttCttT55B.1.1.250.002843
ORF1ab/nsp4390F390FttCttT55B.1.177.720.016949
ORF1ab/nsp4390F390FttCttT55B.1.2340.00066
ORF1ab/nsp4390F390FttCttT55B.1.4260.005045
ORF1ab/nsp4390F390FttCttT55B.1.4881
ORF1ab/nsp4390F390FttCttT44AY.290.000063
ORF1ab/nsp4390F390FttCttT44AY.46.20.002541
ORF1ab/nsp4390F390FttCttT44AY.5.40.001107
ORF1ab/nsp4390F390FttCttT44AY.700.000834
ORF1ab/nsp4390F390FttCttT44AY.850.001709
ORF1ab/nsp4390F390FttCttT44B.1.1.2220.000816
ORF1ab/nsp4390F390FttCttT44B.1.1.2430.016327
ORF1ab/nsp4390F390FttCttT44B.1.1.3060.001754
ORF1ab/nsp4390F390FttCttT44B.1.1.3770.005525
ORF1ab/nsp4390F390FttCttT44B.1.177.570.001124
ORF1ab/nsp4390F390FttCttT44B.1.177.70.000659
ORF1ab/nsp4390F390FttCttT44B.1.2410.003247
ORF1ab/nsp4390F390FttCttT44B.1.3490.002859
ORF1ab/nsp4390F390FttCttT44B.1.5270.014815
ORF1ab/nsp4390F390FttCttT44C.360.003643
ORF1ab/nsp4390F390FttCttT44N.60.028369
ORF1ab/nsp4390F390FttCttT44P.1.50.307692
ORF1ab/nsp4390F390FttCttT44R.10.00036
ORF1ab/nsp4390F390FttCttT33AY.1170.000254
ORF1ab/nsp4390F390FttCttT33AY.370.000948
ORF1ab/nsp4390F390FttCttT33AY.420.000121
ORF1ab/nsp4390F390FttCttT33AY.630.001161
ORF1ab/nsp4390F390FttCttT33AY.670.001393
ORF1ab/nsp4390F390FttCttT33AY.7.10.000338
ORF1ab/nsp4390F390FttCttT33AY.750.000168
ORF1ab/nsp4390F390FttCttT33AY.790.003632
ORF1ab/nsp4390F390FttCttT33B.1.1.2160.002671
ORF1ab/nsp4390F390FttCttT33B.1.1.3120.005736
ORF1ab/nsp4390F390FttCttT33B.1.1.3170.001235
ORF1ab/nsp4390F390FttCttT33B.1.1.3180.000905
ORF1ab/nsp4390F390FttCttT33B.1.1.3260.005282
ORF1ab/nsp4390F390FttCttT33B.1.1.700.001023
ORF1ab/nsp4390F390FttCttT33B.1.177.160.001993
ORF1ab/nsp4390F390FttCttT33B.1.2220.005076
ORF1ab/nsp4390F390FttCttT33B.1.2400.000647
ORF1ab/nsp4390F390FttCttT33B.1.2980.006342
ORF1ab/nsp4390F390FttCttT33B.1.36.210.006479
ORF1ab/nsp4390F390FttCttT33B.1.5770.002062
ORF1ab/nsp4390F390FttCttT33C.350.002322
ORF1ab/nsp4390F390FttCttT220.111111
ORF1ab/nsp4390F390FttCttT22AU.20.004843
ORF1ab/nsp4390F390FttCttT22AY.10.000791
ORF1ab/nsp4390F390FttCttT22AY.100.00106
ORF1ab/nsp4390F390FttCttT22AY.120.000632
ORF1ab/nsp4390F390FttCttT22AY.29.10.000441
ORF1ab/nsp4390F390FttCttT22AY.3.10.000171
ORF1ab/nsp4390F390FttCttT22AY.350.000466
ORF1ab/nsp4390F390FttCttT22AY.4.2.10.000298
ORF1ab/nsp4390F390FttCttT22AY.46.40.000329
ORF1ab/nsp4390F390FttCttT22AY.5.30.000675
ORF1ab/nsp4390F390FttCttT22AY.540.000191
ORF1ab/nsp4390F390FttCttT22AY.590.001059
ORF1ab/nsp4390F390FttCttT22AY.75.10.000361
ORF1ab/nsp4390F390FttCttT22AY.840.000875
ORF1ab/nsp4390F390FttCttT22AY.9.20.000073
ORF1ab/nsp4390F390FttCttT22AY.930.000546
ORF1ab/nsp4390F390FttCttT22AY.950.001522
ORF1ab/nsp4390F390FttCttT22AY.99.20.000184
ORF1ab/nsp4390F390FttCttT22B.1.1.1920.004619
ORF1ab/nsp4390F390FttCttT22B.1.1.2070.002364
ORF1ab/nsp4390F390FttCttT22B.1.1.4330.002849
ORF1ab/nsp4390F390FttCttT22B.1.1.5060.074074
ORF1ab/nsp4390F390FttCttT22B.1.177.330.003289
ORF1ab/nsp4390F390FttCttT22B.1.177.600.000437
ORF1ab/nsp4390F390FttCttT22B.1.177.750.002081
ORF1ab/nsp4390F390FttCttT22B.1.258.170.000208
ORF1ab/nsp4390F390FttCttT22B.1.3090.095238
ORF1ab/nsp4390F390FttCttT22B.1.351.20.000605
ORF1ab/nsp4390F390FttCttT22B.1.36.290.001035
ORF1ab/nsp4390F390FttCttT22B.1.36.80.002
ORF1ab/nsp4390F390FttCttT22B.1.3750.001639
ORF1ab/nsp4390F390FttCttT22B.1.4360.002058
ORF1ab/nsp4390F390FttCttT22B.1.5610.000794
ORF1ab/nsp4390F390FttCttT22B.1.5750.000607
ORF1ab/nsp4390F390FttCttT22B.1.617.10.000258
ORF1ab/nsp4390F390FttCttT22B.1.6190.001742
ORF1ab/nsp4390F390FttCttT22B.1.6230.001073
ORF1ab/nsp4390F390FttCttT22B.1.6310.006734
ORF1ab/nsp4390F390FttCttT22B.1.6390.043478
ORF1ab/nsp4390F390FttCttT22K.30.012346
ORF1ab/nsp4390F390FttCttT22P.1.150.000465
ORF1ab/nsp4390F390FttCttT22P.1.160.000748
ORF1ab/nsp4390F390FttCttT11A.110.058824
ORF1ab/nsp4390F390FttCttT11A.2.40.003367
ORF1ab/nsp4390F390FttCttT11A.210.00277
ORF1ab/nsp4390F390FttCttT11AD.20.000219
ORF1ab/nsp4390F390FttCttT11AY.1040.001984
ORF1ab/nsp4390F390FttCttT11AY.1050.000643
ORF1ab/nsp4390F390FttCttT11AY.1070.000466
ORF1ab/nsp4390F390FttCttT11AY.1090.00074
ORF1ab/nsp4390F390FttCttT11AY.1100.000113
ORF1ab/nsp4390F390FttCttT11AY.1130.000142
ORF1ab/nsp4390F390FttCttT11AY.1140.000231
ORF1ab/nsp4390F390FttCttT11AY.1160.000287
ORF1ab/nsp4390F390FttCttT11AY.120.20.001285
ORF1ab/nsp4390F390FttCttT11AY.130.000161
ORF1ab/nsp4390F390FttCttT11AY.140.000088
ORF1ab/nsp4390F390FttCttT11AY.160.00038
ORF1ab/nsp4390F390FttCttT11AY.16.10.00047
ORF1ab/nsp4390F390FttCttT11AY.23.10.000417
ORF1ab/nsp4390F390FttCttT11AY.270.000065
ORF1ab/nsp4390F390FttCttT11AY.340.000097
ORF1ab/nsp4390F390FttCttT11AY.4.40.000409
ORF1ab/nsp4390F390FttCttT11AY.410.000294
ORF1ab/nsp4390F390FttCttT11AY.450.000122
ORF1ab/nsp4390F390FttCttT11AY.46.60.000072
ORF1ab/nsp4390F390FttCttT11AY.490.003195
ORF1ab/nsp4390F390FttCttT11AY.520.000814
ORF1ab/nsp4390F390FttCttT11AY.530.000288
ORF1ab/nsp4390F390FttCttT11AY.550.000917
ORF1ab/nsp4390F390FttCttT11AY.690.000187
ORF1ab/nsp4390F390FttCttT11AY.710.000475
ORF1ab/nsp4390F390FttCttT11AY.780.001541
ORF1ab/nsp4390F390FttCttT11AY.80.000606
ORF1ab/nsp4390F390FttCttT11AY.860.00083
ORF1ab/nsp4390F390FttCttT11AY.920.000287
ORF1ab/nsp4390F390FttCttT11AZ.10.000867
ORF1ab/nsp4390F390FttCttT11AZ.2.10.00813
ORF1ab/nsp4390F390FttCttT11B.1.1.1410.002012
ORF1ab/nsp4390F390FttCttT11B.1.1.1570.000913
ORF1ab/nsp4390F390FttCttT11B.1.1.1760.000439
ORF1ab/nsp4390F390FttCttT11B.1.1.2200.001859
ORF1ab/nsp4390F390FttCttT11B.1.1.2390.032258
ORF1ab/nsp4390F390FttCttT11B.1.1.2530.002506
ORF1ab/nsp4390F390FttCttT11B.1.1.2770.000759
ORF1ab/nsp4390F390FttCttT11B.1.1.2860.002899
ORF1ab/nsp4390F390FttCttT11B.1.1.2910.000742
ORF1ab/nsp4390F390FttCttT11B.1.1.3040.002809
ORF1ab/nsp4390F390FttCttT11B.1.1.3110.000358
ORF1ab/nsp4390F390FttCttT11B.1.1.3220.008772
ORF1ab/nsp4390F390FttCttT11B.1.1.3330.001076
ORF1ab/nsp4390F390FttCttT11B.1.1.3360.016667
ORF1ab/nsp4390F390FttCttT11B.1.1.3480.000796
ORF1ab/nsp4390F390FttCttT11B.1.1.3720.000689
ORF1ab/nsp4390F390FttCttT11B.1.1.3760.005952
ORF1ab/nsp4390F390FttCttT11B.1.1.4480.002033
ORF1ab/nsp4390F390FttCttT11B.1.1280.000635
ORF1ab/nsp4390F390FttCttT11B.1.1570.002985
ORF1ab/nsp4390F390FttCttT11B.1.160.280.002924
ORF1ab/nsp4390F390FttCttT11B.1.177.100.000878
ORF1ab/nsp4390F390FttCttT11B.1.177.170.000821
ORF1ab/nsp4390F390FttCttT11B.1.177.420.000894
ORF1ab/nsp4390F390FttCttT11B.1.177.580.001332
ORF1ab/nsp4390F390FttCttT11B.1.177.60.000977
ORF1ab/nsp4390F390FttCttT11B.1.177.730.000566
ORF1ab/nsp4390F390FttCttT11B.1.177.80.000752
ORF1ab/nsp4390F390FttCttT11B.1.177.830.001481
ORF1ab/nsp4390F390FttCttT11B.1.177.860.000183
ORF1ab/nsp4390F390FttCttT11B.1.2060.000816
ORF1ab/nsp4390F390FttCttT11B.1.2240.025
ORF1ab/nsp4390F390FttCttT11B.1.2320.000537
ORF1ab/nsp4390F390FttCttT11B.1.2360.002053
ORF1ab/nsp4390F390FttCttT11B.1.2380.014925
ORF1ab/nsp4390F390FttCttT11B.1.2390.001221
ORF1ab/nsp4390F390FttCttT11B.1.258.210.007752
ORF1ab/nsp4390F390FttCttT11B.1.2650.001271
ORF1ab/nsp4390F390FttCttT11B.1.3200.001245
ORF1ab/nsp4390F390FttCttT11B.1.3290.000608
ORF1ab/nsp4390F390FttCttT11B.1.3380.008621
ORF1ab/nsp4390F390FttCttT11B.1.36.10.00114
ORF1ab/nsp4390F390FttCttT11B.1.36.100.004785
ORF1ab/nsp4390F390FttCttT11B.1.36.180.00042
ORF1ab/nsp4390F390FttCttT11B.1.36.200.016949
ORF1ab/nsp4390F390FttCttT11B.1.36.360.000602
ORF1ab/nsp4390F390FttCttT11B.1.3690.000285
ORF1ab/nsp4390F390FttCttT11B.1.3770.004566
ORF1ab/nsp4390F390FttCttT11B.1.4130.004255
ORF1ab/nsp4390F390FttCttT11B.1.4220.000812
ORF1ab/nsp4390F390FttCttT11B.1.4280.00102
ORF1ab/nsp4390F390FttCttT11B.1.4590.004082
ORF1ab/nsp4390F390FttCttT11B.1.466.20.000391
ORF1ab/nsp4390F390FttCttT11B.1.5090.000866
ORF1ab/nsp4390F390FttCttT11B.1.5160.001957
ORF1ab/nsp4390F390FttCttT11B.1.5240.001406
ORF1ab/nsp4390F390FttCttT11B.1.5500.013699
ORF1ab/nsp4390F390FttCttT11B.1.5560.007519
ORF1ab/nsp4390F390FttCttT11B.1.5600.00463
ORF1ab/nsp4390F390FttCttT11B.1.5650.00081
ORF1ab/nsp4390F390FttCttT11B.1.5880.00091
ORF1ab/nsp4390F390FttCttT11B.1.617.30.002985
ORF1ab/nsp4390F390FttCttT11B.1.6270.00202
ORF1ab/nsp4390F390FttCttT11B.1.88.10.004808
ORF1ab/nsp4390F390FttCttT11B.110.005128
ORF1ab/nsp4390F390FttCttT11B.610.005747
ORF1ab/nsp4390F390FttCttT11P.1.130.000898
ORF1ab/nsp4390F390FttCttT11P.60.003145
ORF1ab/nsp4390F390FttCttT11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.