CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = F17S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp417F17SF2780SnonsyntTctCc289228850.997588603-8605
ORF1ab/nsp417F17SF2780SnonsynTTcAGc289250.001728918603-8605
ORF1ab/nsp417F17SF2780SnonsyntTCtCT289210.0003457818603-8605
ORF1ab/nsp417F17SF2780SnonsynTTCAGT289210.0003457818603-8605

Details of the mutation F17S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp417F17StTctCc28852892All0.000552
ORF1ab/nsp417F17STTcAGc52892All0.000001
ORF1ab/nsp417F17StTCtCT12892All0
ORF1ab/nsp417F17STTCAGT12892All0
ORF1ab/nsp417F17StTctCc26142615AY.40.004068
ORF1ab/nsp417F17StTCtCT12615AY.40.000002
ORF1ab/nsp417F17StTctCc9292B.1.1.70.000082
ORF1ab/nsp417F17StTctCc2628AY.430.000115
ORF1ab/nsp417F17STTcAGc228AY.430.000009
ORF1ab/nsp417F17StTctCc2626B.1.617.20.000098
ORF1ab/nsp417F17StTctCc2222AY.50.000454
ORF1ab/nsp417F17StTctCc2020B.1.10.000363
ORF1ab/nsp417F17StTctCc1515AY.420.000603
ORF1ab/nsp417F17StTctCc1111B.1.36.290.005691
ORF1ab/nsp417F17StTctCc66B.1.20.000053
ORF1ab/nsp417F17StTctCc66P.10.000095
ORF1ab/nsp417F17StTctCc55B.1.1.2770.003794
ORF1ab/nsp417F17StTctCc55B.1.3510.000149
ORF1ab/nsp417F17StTctCc33AY.230.000209
ORF1ab/nsp417F17STTcAGc120.055556
ORF1ab/nsp417F17STTCAGT120.055556
ORF1ab/nsp417F17StTctCc22AY.390.000049
ORF1ab/nsp417F17StTctCc22AY.750.000112
ORF1ab/nsp417F17StTctCc22AY.90.000135
ORF1ab/nsp417F17StTctCc22B.1.1.370.000386
ORF1ab/nsp417F17StTctCc22B.1.1600.000062
ORF1ab/nsp417F17StTctCc22B.1.258.170.000208
ORF1ab/nsp417F17StTctCc11A0.000387
ORF1ab/nsp417F17StTctCc11AY.1020.000027
ORF1ab/nsp417F17StTctCc11AY.260.000028
ORF1ab/nsp417F17StTctCc11AY.270.000065
ORF1ab/nsp417F17StTctCc11AY.30.00001
ORF1ab/nsp417F17StTctCc11AY.440.000006
ORF1ab/nsp417F17STTcAGc11AY.46.60.000072
ORF1ab/nsp417F17StTctCc11AY.840.000437
ORF1ab/nsp417F17STTcAGc11AY.9.20.000037
ORF1ab/nsp417F17StTctCc11AY.980.000079
ORF1ab/nsp417F17StTctCc11AY.990.001049
ORF1ab/nsp417F17StTctCc11B0.000128
ORF1ab/nsp417F17StTctCc11B.10.000009
ORF1ab/nsp417F17StTctCc11B.1.1.1740.003378
ORF1ab/nsp417F17StTctCc11B.1.1.3170.000412
ORF1ab/nsp417F17StTctCc11B.1.1.5190.00004
ORF1ab/nsp417F17StTctCc11B.1.1770.000013
ORF1ab/nsp417F17StTctCc11B.1.177.160.000664
ORF1ab/nsp417F17StTctCc11B.1.2400.000216
ORF1ab/nsp417F17StTctCc11B.1.4090.000781
ORF1ab/nsp417F17StTctCc11B.1.4220.000812
ORF1ab/nsp417F17StTctCc11B.1.4970.000315
ORF1ab/nsp417F17StTctCc11B.1.5210.004975
ORF1ab/nsp417F17StTctCc11B.1.5820.000491