CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = F17F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp417F17FF2780FsynttCttT1954195418603-8605

Details of the mutation F17F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp417F17FttCttT19541954All0.000374
ORF1ab/nsp417F17FttCttT404404B.1.1.70.000362
ORF1ab/nsp417F17FttCttT259259B.1.617.20.000975
ORF1ab/nsp417F17FttCttT182182A.290.968085
ORF1ab/nsp417F17FttCttT138138AY.40.000215
ORF1ab/nsp417F17FttCttT8888B.1.36.20.946237
ORF1ab/nsp417F17FttCttT8686AY.350.020042
ORF1ab/nsp417F17FttCttT7575B.1.20.00066
ORF1ab/nsp417F17FttCttT6262B.1.1600.001934
ORF1ab/nsp417F17FttCttT4747B.1.2980.099366
ORF1ab/nsp417F17FttCttT3838P.10.000599
ORF1ab/nsp417F17FttCttT3434AY.440.000207
ORF1ab/nsp417F17FttCttT3232AY.430.000142
ORF1ab/nsp417F17FttCttT3030AY.1030.000186
ORF1ab/nsp417F17FttCttT2929B.1.1.5190.001152
ORF1ab/nsp417F17FttCttT2121AY.99.20.001935
ORF1ab/nsp417F17FttCttT2020AY.1010.009809
ORF1ab/nsp417F17FttCttT2020AY.360.002964
ORF1ab/nsp417F17FttCttT2020AY.460.002082
ORF1ab/nsp417F17FttCttT1919AY.250.000114
ORF1ab/nsp417F17FttCttT1717B.10.000156
ORF1ab/nsp417F17FttCttT1616AY.1170.001352
ORF1ab/nsp417F17FttCttT1515B.1.2430.001044
ORF1ab/nsp417F17FttCttT1414AY.420.000563
ORF1ab/nsp417F17FttCttT1414B.1.1.5230.021875
ORF1ab/nsp417F17FttCttT1313AD.20.002847
ORF1ab/nsp417F17FttCttT1212AY.16.10.005639
ORF1ab/nsp417F17FttCttT1212B.1.1.4200.012072
ORF1ab/nsp417F17FttCttT1111B.1.3510.000327
ORF1ab/nsp417F17FttCttT1111C.360.010018
ORF1ab/nsp417F17FttCttT1010A0.00387
ORF1ab/nsp417F17FttCttT1010B.1.10.000181
ORF1ab/nsp417F17FttCttT99AY.390.000222
ORF1ab/nsp417F17FttCttT77B0.000895
ORF1ab/nsp417F17FttCttT77Q.10.000884
ORF1ab/nsp417F17FttCttT66AY.340.000582
ORF1ab/nsp417F17FttCttT55AY.1210.000677
ORF1ab/nsp417F17FttCttT55AY.480.002326
ORF1ab/nsp417F17FttCttT55B.1.1770.000066
ORF1ab/nsp417F17FttCttT55B.1.2210.000355
ORF1ab/nsp417F17FttCttT55B.1.3620.007704
ORF1ab/nsp417F17FttCttT55B.1.4290.000118
ORF1ab/nsp417F17FttCttT55B.1.5950.001305
ORF1ab/nsp417F17FttCttT440.222222
ORF1ab/nsp417F17FttCttT44AY.230.000279
ORF1ab/nsp417F17FttCttT44AY.5.40.001107
ORF1ab/nsp417F17FttCttT44AY.610.000419
ORF1ab/nsp417F17FttCttT44AY.98.10.000194
ORF1ab/nsp417F17FttCttT44B.1.2340.000528
ORF1ab/nsp417F17FttCttT44B.1.6210.000354
ORF1ab/nsp417F17FttCttT33AY.1000.000138
ORF1ab/nsp417F17FttCttT33AY.1020.00008
ORF1ab/nsp417F17FttCttT33AY.1080.003308
ORF1ab/nsp417F17FttCttT33AY.290.000047
ORF1ab/nsp417F17FttCttT33AY.4.20.000065
ORF1ab/nsp417F17FttCttT33AY.470.000093
ORF1ab/nsp417F17FttCttT33B.1.1110.003525
ORF1ab/nsp417F17FttCttT33B.1.160.280.008772
ORF1ab/nsp417F17FttCttT33B.1.5170.001281
ORF1ab/nsp417F17FttCttT33B.1.5260.000071
ORF1ab/nsp417F17FttCttT33D.20.000225
ORF1ab/nsp417F17FttCttT22AY.130.000322
ORF1ab/nsp417F17FttCttT22AY.270.000129
ORF1ab/nsp417F17FttCttT22AY.30.00002
ORF1ab/nsp417F17FttCttT22AY.50.000041
ORF1ab/nsp417F17FttCttT22B.1.1.3060.000877
ORF1ab/nsp417F17FttCttT22B.1.1.3180.000604
ORF1ab/nsp417F17FttCttT22B.1.3460.002621
ORF1ab/nsp417F17FttCttT22B.1.4680.011429
ORF1ab/nsp417F17FttCttT22B.1.6230.001073
ORF1ab/nsp417F17FttCttT22Q.80.00033
ORF1ab/nsp417F17FttCttT11A.20.000662
ORF1ab/nsp417F17FttCttT11A.2.40.003367
ORF1ab/nsp417F17FttCttT11A.23.10.000704
ORF1ab/nsp417F17FttCttT11A.270.001656
ORF1ab/nsp417F17FttCttT11A.30.002096
ORF1ab/nsp417F17FttCttT11AT.10.005128
ORF1ab/nsp417F17FttCttT11AY.1100.000113
ORF1ab/nsp417F17FttCttT11AY.1130.000142
ORF1ab/nsp417F17FttCttT11AY.116.10.000311
ORF1ab/nsp417F17FttCttT11AY.1190.000035
ORF1ab/nsp417F17FttCttT11AY.120.20.001285
ORF1ab/nsp417F17FttCttT11AY.190.00114
ORF1ab/nsp417F17FttCttT11AY.200.000039
ORF1ab/nsp417F17FttCttT11AY.260.000028
ORF1ab/nsp417F17FttCttT11AY.450.000122
ORF1ab/nsp417F17FttCttT11AY.740.000116
ORF1ab/nsp417F17FttCttT11AY.750.000056
ORF1ab/nsp417F17FttCttT11AY.75.10.00018
ORF1ab/nsp417F17FttCttT11AY.780.001541
ORF1ab/nsp417F17FttCttT11AY.840.000437
ORF1ab/nsp417F17FttCttT11AY.920.000287
ORF1ab/nsp417F17FttCttT11AY.980.000079
ORF1ab/nsp417F17FttCttT11B.1.1.1150.008929
ORF1ab/nsp417F17FttCttT11B.1.1.2140.000055
ORF1ab/nsp417F17FttCttT11B.1.1.2220.000204
ORF1ab/nsp417F17FttCttT11B.1.1.2630.001558
ORF1ab/nsp417F17FttCttT11B.1.1.280.000311
ORF1ab/nsp417F17FttCttT11B.1.1.3400.045455
ORF1ab/nsp417F17FttCttT11B.1.177.230.003236
ORF1ab/nsp417F17FttCttT11B.1.177.460.000918
ORF1ab/nsp417F17FttCttT11B.1.351.30.000876
ORF1ab/nsp417F17FttCttT11B.1.36.170.000494
ORF1ab/nsp417F17FttCttT11B.1.4270.00005
ORF1ab/nsp417F17FttCttT11B.1.4410.009615
ORF1ab/nsp417F17FttCttT11B.1.466.20.000391
ORF1ab/nsp417F17FttCttT11B.1.4740.001901
ORF1ab/nsp417F17FttCttT11B.1.5250.000113
ORF1ab/nsp417F17FttCttT11B.1.5820.000491
ORF1ab/nsp417F17FttCttT11B.1.617.10.000129
ORF1ab/nsp417F17FttCttT11B.1.6280.000352
ORF1ab/nsp417F17FttCttT11B.1.6370.000073
ORF1ab/nsp417F17FttCttT11B.1.930.000934
ORF1ab/nsp417F17FttCttT11B.400.000364
ORF1ab/nsp417F17FttCttT11B.550.00295
ORF1ab/nsp417F17FttCttT11B.6.60.000889
ORF1ab/nsp417F17FttCttT11C.180.002591
ORF1ab/nsp417F17FttCttT11C.370.000116
ORF1ab/nsp417F17FttCttT11P.1.140.000048
ORF1ab/nsp417F17FttCttT11P.1.160.000374
ORF1ab/nsp417F17FttCttT11Q.50.016949

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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