CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 17 | F17F | F2780F | syn | ttC | ttT | 1954 | 1954 | 1 | 8603-8605 |
Details of the mutation F17F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1954 | 1954 | All | 0.000374 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 404 | 404 | B.1.1.7 | 0.000362 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 259 | 259 | B.1.617.2 | 0.000975 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 182 | 182 | A.29 | 0.968085 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 138 | 138 | AY.4 | 0.000215 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 88 | 88 | B.1.36.2 | 0.946237 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 86 | 86 | AY.35 | 0.020042 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 75 | 75 | B.1.2 | 0.00066 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 62 | 62 | B.1.160 | 0.001934 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 47 | 47 | B.1.298 | 0.099366 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 38 | 38 | P.1 | 0.000599 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 34 | 34 | AY.44 | 0.000207 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 32 | 32 | AY.43 | 0.000142 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 30 | 30 | AY.103 | 0.000186 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 29 | 29 | B.1.1.519 | 0.001152 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 21 | 21 | AY.99.2 | 0.001935 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 20 | 20 | AY.101 | 0.009809 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 20 | 20 | AY.36 | 0.002964 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 20 | 20 | AY.46 | 0.002082 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 19 | 19 | AY.25 | 0.000114 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 17 | 17 | B.1 | 0.000156 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 16 | 16 | AY.117 | 0.001352 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 15 | 15 | B.1.243 | 0.001044 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 14 | 14 | AY.42 | 0.000563 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 14 | 14 | B.1.1.523 | 0.021875 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 13 | 13 | AD.2 | 0.002847 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 12 | 12 | AY.16.1 | 0.005639 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 12 | 12 | B.1.1.420 | 0.012072 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 11 | 11 | B.1.351 | 0.000327 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 11 | 11 | C.36 | 0.010018 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 10 | 10 | A | 0.00387 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 9 | 9 | AY.39 | 0.000222 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 7 | 7 | B | 0.000895 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 7 | 7 | Q.1 | 0.000884 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 5 | 5 | AY.48 | 0.002326 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 5 | 5 | B.1.362 | 0.007704 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 5 | 5 | B.1.595 | 0.001305 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 4 | 4 | 0.222222 | |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 4 | 4 | AY.5.4 | 0.001107 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | AY.108 | 0.003308 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | B.1.111 | 0.003525 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | B.1.160.28 | 0.008772 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 2 | 2 | B.1.346 | 0.002621 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 2 | 2 | B.1.468 | 0.011429 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.1.115 | 0.008929 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.1.340 | 0.045455 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | Q.5 | 0.016949 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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