CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 279 | D279N | D3042N | nonsyn | Gac | Aac | 3534 | 3533 | 0.999717 | 9389-9391 |
ORF1ab/nsp4 | 279 | D279N | D3042N | nonsyn | GaC | AaT | 3534 | 1 | 0.000282965 | 9389-9391 |
Details of the mutation D279N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 3533 | 3534 | All | 0.000676 |
ORF1ab/nsp4 | 279 | D279N | GaC | AaT | 1 | 3534 | All | 0 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1321 | 1321 | B.1.1 | 0.023964 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 489 | 490 | AY.4.2 | 0.010606 |
ORF1ab/nsp4 | 279 | D279N | GaC | AaT | 1 | 490 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 252 | 252 | B.1.1.39 | 0.12844 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 228 | 228 | B.1.1.354 | 1 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 189 | 189 | B.1.560 | 0.875 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 173 | 173 | AY.4 | 0.000269 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 147 | 147 | B.1.1.526 | 0.521277 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 109 | 109 | B.1 | 0.000998 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 70 | 70 | B.1.1.519 | 0.00278 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 46 | 46 | B.1.1.28 | 0.014317 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 45 | 45 | B.1.1.353 | 0.9375 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 38 | 38 | B.1.1.7 | 0.000034 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 36 | 36 | AY.120 | 0.001338 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 24 | 24 | B.1.617.2 | 0.00009 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 22 | 22 | AY.25 | 0.000132 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 19 | 19 | B.1.1.189 | 0.028744 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 17 | 17 | AY.103 | 0.000106 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 17 | 17 | B.1.1.241 | 0.035197 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 15 | 15 | AY.54 | 0.00143 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 14 | 14 | B.1.427 | 0.000707 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 12 | 12 | B.1.1.409 | 0.033994 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 12 | 12 | B.1.160.29 | 0.050633 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 11 | 11 | AY.119 | 0.000388 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 11 | 11 | B.1.1.182 | 1 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 8 | 8 | B.1.1.17 | 0.133333 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 7 | 7 | B.1.1.294 | 0.008861 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 6 | 6 | B | 0.000767 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 5 | 5 | B.1.1.416 | 0.004525 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 4 | 4 | B.1.1.13 | 0.142857 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 4 | 4 | B.1.1.253 | 0.010025 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 4 | 4 | B.1.1.464 | 0.005891 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 4 | 4 | B.1.177.73 | 0.002265 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 4 | 4 | B.1.599 | 0.014599 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 3 | 3 | B.1.1.277 | 0.002276 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 3 | 3 | B.1.1.305 | 0.011583 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 3 | 3 | B.1.362.1 | 0.2 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 2 | 2 | B.1.1.117 | 0.019417 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 2 | 2 | B.1.1.203 | 0.033898 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 2 | 2 | B.1.1.231 | 0.006192 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 2 | 2 | B.1.1.237 | 0.010811 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 2 | 2 | B.1.1.254 | 0.022472 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 2 | 2 | B.1.1.327 | 0.2 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 2 | 2 | B.1.1.356 | 0.017094 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 2 | 2 | B.1.1.402 | 0.022222 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 2 | 2 | B.1.1.419 | 0.014815 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 2 | 2 | B.1.1.452 | 0.222222 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 2 | 2 | B.1.1.83 | 0.00542 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 2 | 2 | B.1.258.7 | 0.003824 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.262 | 0.015152 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.406 | 0.006494 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.425 | 0.045455 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.430 | 0.041667 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.53 | 0.013699 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.258.4 | 0.003448 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp4 | 279 | D279N | Gac | Aac | 1 | 1 | P.1.14 | 0.000048 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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