CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 172 | D172D | D2935D | syn | gaT | gaC | 2243 | 2243 | 1 | 9068-9070 |
Details of the mutation D172D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2243 | 2243 | All | 0.000429 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 634 | 634 | AY.4 | 0.000987 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 178 | 178 | AT.1 | 0.912821 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 174 | 174 | AY.111 | 0.031868 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 161 | 161 | B.1.1.7 | 0.000144 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 145 | 145 | B.1.1.519 | 0.005758 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 138 | 138 | AY.3 | 0.001373 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 77 | 77 | B.1.617.2 | 0.00029 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 69 | 69 | AY.43 | 0.000306 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 56 | 56 | AY.44 | 0.000341 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 47 | 47 | B.1.323 | 0.979167 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 45 | 45 | P.1.14 | 0.002151 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 43 | 43 | B.1.258.17 | 0.004471 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 42 | 42 | AY.103 | 0.000261 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 29 | 29 | B.1.2 | 0.000255 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 28 | 28 | B.1.429 | 0.000659 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 22 | 22 | AY.121 | 0.002977 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 17 | 17 | AY.25 | 0.000102 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 16 | 16 | AY.39 | 0.000395 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 16 | 16 | B.1.408 | 0.059041 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 12 | 12 | AY.5 | 0.000248 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 12 | 12 | P.1.16 | 0.004489 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 11 | 11 | B.1.1.372 | 0.007576 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 10 | 10 | B.1.177 | 0.000132 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 10 | 10 | B.1.621.1 | 0.005058 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 9 | 9 | B.1.551 | 0.011613 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 9 | 9 | Q.4 | 0.004093 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 6 | 6 | AY.55 | 0.005505 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 4 | 4 | 0.222222 | |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 4 | 4 | AY.70 | 0.000834 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 4 | 4 | B.1.36.1 | 0.004561 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 3 | 3 | B.1.619.1 | 0.001924 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | AY.80 | 0.002257 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | B.1.1.159 | 0.009346 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | B.1.36.10 | 0.009569 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | P.1.6 | 0.003891 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.1.98 | 0.018519 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.182 | 0.007246 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.264 | 0.012346 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.281 | 0.021739 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.333 | 0.010526 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.586 | 0.010989 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp4 | 172 | D172D | gaT | gaC | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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