CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = C418C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4418C418CC3181CsyntgCtgT1070107019806-9808

Details of the mutation C418C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4418C418CtgCtgT10701070All0.000205
ORF1ab/nsp4418C418CtgCtgT181181B.1.1.70.000162
ORF1ab/nsp4418C418CtgCtgT114114B.1.3980.339286
ORF1ab/nsp4418C418CtgCtgT104104C.30.10.697987
ORF1ab/nsp4418C418CtgCtgT9999AY.40.000154
ORF1ab/nsp4418C418CtgCtgT6767B.1.3510.001992
ORF1ab/nsp4418C418CtgCtgT4141B.10.000376
ORF1ab/nsp4418C418CtgCtgT3838AY.30.000378
ORF1ab/nsp4418C418CtgCtgT3131AY.430.000137
ORF1ab/nsp4418C418CtgCtgT3030AY.680.008212
ORF1ab/nsp4418C418CtgCtgT2828AY.50.000578
ORF1ab/nsp4418C418CtgCtgT2828B.1.617.20.000105
ORF1ab/nsp4418C418CtgCtgT2121AY.1020.000557
ORF1ab/nsp4418C418CtgCtgT1818AY.440.00011
ORF1ab/nsp4418C418CtgCtgT1414P.10.000221
ORF1ab/nsp4418C418CtgCtgT1313B.1.4290.000306
ORF1ab/nsp4418C418CtgCtgT1313B.1.930.012138
ORF1ab/nsp4418C418CtgCtgT1111B.1.1770.000145
ORF1ab/nsp4418C418CtgCtgT99AY.1030.000056
ORF1ab/nsp4418C418CtgCtgT99AY.250.000054
ORF1ab/nsp4418C418CtgCtgT99B.1.10.000163
ORF1ab/nsp4418C418CtgCtgT99B.1.20.000079
ORF1ab/nsp4418C418CtgCtgT99B.1.6370.000658
ORF1ab/nsp4418C418CtgCtgT88AY.98.10.000387
ORF1ab/nsp4418C418CtgCtgT88B.1.1.3160.007401
ORF1ab/nsp4418C418CtgCtgT88B.1.4270.000404
ORF1ab/nsp4418C418CtgCtgT77AY.99.20.000645
ORF1ab/nsp4418C418CtgCtgT55AY.740.000578
ORF1ab/nsp4418C418CtgCtgT55B.1.36.180.002101
ORF1ab/nsp4418C418CtgCtgT55D.20.000375
ORF1ab/nsp4418C418CtgCtgT44AY.260.000113
ORF1ab/nsp4418C418CtgCtgT44AY.390.000099
ORF1ab/nsp4418C418CtgCtgT44B.1.1.2840.00043
ORF1ab/nsp4418C418CtgCtgT44B.1.1.5190.000159
ORF1ab/nsp4418C418CtgCtgT44B.1.36.240.024691
ORF1ab/nsp4418C418CtgCtgT33AY.1060.001005
ORF1ab/nsp4418C418CtgCtgT33AY.240.001293
ORF1ab/nsp4418C418CtgCtgT33AY.290.000047
ORF1ab/nsp4418C418CtgCtgT33AY.4.50.000322
ORF1ab/nsp4418C418CtgCtgT33AY.670.001393
ORF1ab/nsp4418C418CtgCtgT33AY.9.20.00011
ORF1ab/nsp4418C418CtgCtgT33B.1.1.3260.005282
ORF1ab/nsp4418C418CtgCtgT33B.1.2210.000213
ORF1ab/nsp4418C418CtgCtgT33B.1.36.290.001552
ORF1ab/nsp4418C418CtgCtgT33B.1.5260.000071
ORF1ab/nsp4418C418CtgCtgT22AY.1000.000092
ORF1ab/nsp4418C418CtgCtgT22AY.1200.000074
ORF1ab/nsp4418C418CtgCtgT22AY.200.000078
ORF1ab/nsp4418C418CtgCtgT22AY.230.000139
ORF1ab/nsp4418C418CtgCtgT22AY.34.10.00102
ORF1ab/nsp4418C418CtgCtgT22AY.460.000208
ORF1ab/nsp4418C418CtgCtgT22AY.470.000062
ORF1ab/nsp4418C418CtgCtgT22AY.600.001876
ORF1ab/nsp4418C418CtgCtgT22B.1.1.2080.02439
ORF1ab/nsp4418C418CtgCtgT22B.1.1.2910.001485
ORF1ab/nsp4418C418CtgCtgT22B.1.1.3480.001592
ORF1ab/nsp4418C418CtgCtgT22B.1.1.3510.005587
ORF1ab/nsp4418C418CtgCtgT22B.1.1.3980.006452
ORF1ab/nsp4418C418CtgCtgT22B.1.1.4330.002849
ORF1ab/nsp4418C418CtgCtgT22B.1.2430.000139
ORF1ab/nsp4418C418CtgCtgT22B.1.4970.00063
ORF1ab/nsp4418C418CtgCtgT22B.1.5950.000522
ORF1ab/nsp4418C418CtgCtgT22B.400.000729
ORF1ab/nsp4418C418CtgCtgT22C.360.001821
ORF1ab/nsp4418C418CtgCtgT110.055556
ORF1ab/nsp4418C418CtgCtgT11A.2.50.000499
ORF1ab/nsp4418C418CtgCtgT11AM.40.003571
ORF1ab/nsp4418C418CtgCtgT11AY.1140.000231
ORF1ab/nsp4418C418CtgCtgT11AY.1160.000287
ORF1ab/nsp4418C418CtgCtgT11AY.1170.000085
ORF1ab/nsp4418C418CtgCtgT11AY.1210.000135
ORF1ab/nsp4418C418CtgCtgT11AY.160.00038
ORF1ab/nsp4418C418CtgCtgT11AY.340.000097
ORF1ab/nsp4418C418CtgCtgT11AY.350.000233
ORF1ab/nsp4418C418CtgCtgT11AY.360.000148
ORF1ab/nsp4418C418CtgCtgT11AY.450.000122
ORF1ab/nsp4418C418CtgCtgT11AY.46.60.000072
ORF1ab/nsp4418C418CtgCtgT11AY.510.000909
ORF1ab/nsp4418C418CtgCtgT11AY.60.000041
ORF1ab/nsp4418C418CtgCtgT11AY.610.000105
ORF1ab/nsp4418C418CtgCtgT11AY.750.000056
ORF1ab/nsp4418C418CtgCtgT11AY.80.000606
ORF1ab/nsp4418C418CtgCtgT11AY.9.10.000084
ORF1ab/nsp4418C418CtgCtgT11AY.980.000079
ORF1ab/nsp4418C418CtgCtgT11B.1.1.2140.000055
ORF1ab/nsp4418C418CtgCtgT11B.1.1.3050.003861
ORF1ab/nsp4418C418CtgCtgT11B.1.1.330.000421
ORF1ab/nsp4418C418CtgCtgT11B.1.1.3540.004386
ORF1ab/nsp4418C418CtgCtgT11B.1.1.4200.001006
ORF1ab/nsp4418C418CtgCtgT11B.1.1.4410.05
ORF1ab/nsp4418C418CtgCtgT11B.1.177.560.000668
ORF1ab/nsp4418C418CtgCtgT11B.1.258.170.000104
ORF1ab/nsp4418C418CtgCtgT11B.1.351.30.000876
ORF1ab/nsp4418C418CtgCtgT11B.1.4090.000781
ORF1ab/nsp4418C418CtgCtgT11B.1.4280.00102
ORF1ab/nsp4418C418CtgCtgT11B.1.5050.004386
ORF1ab/nsp4418C418CtgCtgT11B.1.5700.002941
ORF1ab/nsp4418C418CtgCtgT11B.1.6090.000479
ORF1ab/nsp4418C418CtgCtgT11B.1.617.10.000129
ORF1ab/nsp4418C418CtgCtgT11B.1.6210.000089
ORF1ab/nsp4418C418CtgCtgT11P.1.120.000484
ORF1ab/nsp4418C418CtgCtgT11P.1.140.000048
ORF1ab/nsp4418C418CtgCtgT11P.1.70.000319
ORF1ab/nsp4418C418CtgCtgT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.