CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = A446A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4446A446AA3209AsyngcTgcC1591260.7924539890-9892
ORF1ab/nsp4446A446AA3209AsyngcTgcG159190.1194979890-9892
ORF1ab/nsp4446A446AA3209AsyngcTgcA159140.08805039890-9892

Details of the mutation A446A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4446A446AgcTgcC126159All0.000024
ORF1ab/nsp4446A446AgcTgcG19159All0.000004
ORF1ab/nsp4446A446AgcTgcA14159All0.000003
ORF1ab/nsp4446A446AgcTgcC3132B.1.4290.000729
ORF1ab/nsp4446A446AgcTgcG132B.1.4290.000024
ORF1ab/nsp4446A446AgcTgcC1224AY.40.000019
ORF1ab/nsp4446A446AgcTgcA1224AY.40.000019
ORF1ab/nsp4446A446AgcTgcC1717B.1.36.280.097701
ORF1ab/nsp4446A446AgcTgcC1111AY.440.000067
ORF1ab/nsp4446A446AgcTgcG59B.1.1.70.000004
ORF1ab/nsp4446A446AgcTgcC49B.1.1.70.000004
ORF1ab/nsp4446A446AgcTgcC78AY.430.000031
ORF1ab/nsp4446A446AgcTgcG18AY.430.000004
ORF1ab/nsp4446A446AgcTgcC88P.10.000126
ORF1ab/nsp4446A446AgcTgcC57AY.250.00003
ORF1ab/nsp4446A446AgcTgcG17AY.250.000006
ORF1ab/nsp4446A446AgcTgcA17AY.250.000006
ORF1ab/nsp4446A446AgcTgcG45B.1.3510.000119
ORF1ab/nsp4446A446AgcTgcC15B.1.3510.00003
ORF1ab/nsp4446A446AgcTgcC55B.1.617.20.000019
ORF1ab/nsp4446A446AgcTgcC34B.1.20.000026
ORF1ab/nsp4446A446AgcTgcG14B.1.20.000009
ORF1ab/nsp4446A446AgcTgcC22AY.4.50.000215
ORF1ab/nsp4446A446AgcTgcC22B.10.000018
ORF1ab/nsp4446A446AgcTgcA12B.1.10.000018
ORF1ab/nsp4446A446AgcTgcC12B.1.10.000018
ORF1ab/nsp4446A446AgcTgcC22B.1.2430.000139
ORF1ab/nsp4446A446AgcTgcG22B.1.5260.000047
ORF1ab/nsp4446A446AgcTgcC11AY.1000.000046
ORF1ab/nsp4446A446AgcTgcC11AY.390.000025
ORF1ab/nsp4446A446AgcTgcC11AY.39.10.00004
ORF1ab/nsp4446A446AgcTgcC11AY.50.000021
ORF1ab/nsp4446A446AgcTgcC11AY.98.10.000048
ORF1ab/nsp4446A446AgcTgcC11B0.000128
ORF1ab/nsp4446A446AgcTgcC11B.1.1.1330.008475
ORF1ab/nsp4446A446AgcTgcC11B.1.1.2660.012195
ORF1ab/nsp4446A446AgcTgcC11B.1.1.280.000311
ORF1ab/nsp4446A446AgcTgcC11B.1.1.3980.003226
ORF1ab/nsp4446A446AgcTgcG11B.1.1.630.000386
ORF1ab/nsp4446A446AgcTgcC11B.1.177.820.000477
ORF1ab/nsp4446A446AgcTgcC11B.1.2340.000132
ORF1ab/nsp4446A446AgcTgcC11B.1.3620.001541
ORF1ab/nsp4446A446AgcTgcG11B.1.5380.008065
ORF1ab/nsp4446A446AgcTgcC11B.1.6180.004032
ORF1ab/nsp4446A446AgcTgcG11P.1.10.000318
ORF1ab/nsp4446A446AgcTgcG11P.20.000187
ORF1ab/nsp4446A446AgcTgcC11R.10.00009