CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = A416V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4416A416VA3179VnonsyngCggTg27220.8148159800-9802
ORF1ab/nsp4416A416VA3179VnonsyngCGgTA2720.07407419800-9802
ORF1ab/nsp4416A416VA3179VnonsyngCGgTT2720.07407419800-9802
ORF1ab/nsp4416A416VA3179VnonsyngCGgTC2710.0370379800-9802

Details of the mutation A416V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4416A416VgCggTg2227All0.000004
ORF1ab/nsp4416A416VgCGgTT227All0
ORF1ab/nsp4416A416VgCGgTA227All0
ORF1ab/nsp4416A416VgCGgTC127All0
ORF1ab/nsp4416A416VgCggTg360.166667
ORF1ab/nsp4416A416VgCGgTT260.111111
ORF1ab/nsp4416A416VgCGgTC160.055556
ORF1ab/nsp4416A416VgCggTg33B.10.000027
ORF1ab/nsp4416A416VgCggTg22B.1.20.000018
ORF1ab/nsp4416A416VgCggTg12B.1.617.20.000004
ORF1ab/nsp4416A416VgCGgTA12B.1.617.20.000004
ORF1ab/nsp4416A416VgCGgTA11AY.290.000016
ORF1ab/nsp4416A416VgCggTg11AY.30.00001
ORF1ab/nsp4416A416VgCggTg11AY.380.000499
ORF1ab/nsp4416A416VgCggTg11AY.440.000006
ORF1ab/nsp4416A416VgCggTg11B.1.10.000018
ORF1ab/nsp4416A416VgCggTg11B.1.1.610.008772
ORF1ab/nsp4416A416VgCggTg11B.1.1.70.000001
ORF1ab/nsp4416A416VgCggTg11B.1.1770.000013
ORF1ab/nsp4416A416VgCggTg11B.1.2360.002053
ORF1ab/nsp4416A416VgCggTg11B.1.3690.000285
ORF1ab/nsp4416A416VgCggTg11B.1.4290.000024
ORF1ab/nsp4416A416VgCggTg11B.1.5640.000426
ORF1ab/nsp4416A416VgCggTg11B.1.6270.00202
ORF1ab/nsp4416A416VgCggTg11P.10.000016