CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = A416A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4416A416AA3179AsyngcGgcT998794010.9413249800-9802
ORF1ab/nsp4416A416AA3179AsyngcGgcA99875520.05527199800-9802
ORF1ab/nsp4416A416AA3179AsyngcGgcC9987340.003404439800-9802

Details of the mutation A416A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4416A416AgcGgcT94019987All0.001798
ORF1ab/nsp4416A416AgcGgcA5529987All0.000106
ORF1ab/nsp4416A416AgcGgcC349987All0.000007
ORF1ab/nsp4416A416AgcGgcT20072065AY.40.003124
ORF1ab/nsp4416A416AgcGgcA582065AY.40.00009
ORF1ab/nsp4416A416AgcGgcT19211925B.1.10.034849
ORF1ab/nsp4416A416AgcGgcA41925B.1.10.000073
ORF1ab/nsp4416A416AgcGgcT15671634B.1.1.70.001403
ORF1ab/nsp4416A416AgcGgcA651634B.1.1.70.000058
ORF1ab/nsp4416A416AgcGgcC21634B.1.1.70.000002
ORF1ab/nsp4416A416AgcGgcT11821182B.1.1.3480.941083
ORF1ab/nsp4416A416AgcGgcT388388B.1.1.3070.982278
ORF1ab/nsp4416A416AgcGgcT307307AY.9.20.011276
ORF1ab/nsp4416A416AgcGgcT239271B.1.617.20.0009
ORF1ab/nsp4416A416AgcGgcA31271B.1.617.20.000117
ORF1ab/nsp4416A416AgcGgcC1271B.1.617.20.000004
ORF1ab/nsp4416A416AgcGgcT248259AY.430.001099
ORF1ab/nsp4416A416AgcGgcA11259AY.430.000049
ORF1ab/nsp4416A416AgcGgcA81158AY.250.000487
ORF1ab/nsp4416A416AgcGgcT77158AY.250.000463
ORF1ab/nsp4416A416AgcGgcT95112AY.1030.00059
ORF1ab/nsp4416A416AgcGgcA17112AY.1030.000106
ORF1ab/nsp4416A416AgcGgcT9498AY.30.000935
ORF1ab/nsp4416A416AgcGgcA498AY.30.00004
ORF1ab/nsp4416A416AgcGgcT8489B.10.000769
ORF1ab/nsp4416A416AgcGgcA489B.10.000037
ORF1ab/nsp4416A416AgcGgcC189B.10.000009
ORF1ab/nsp4416A416AgcGgcT7583P.10.001182
ORF1ab/nsp4416A416AgcGgcA883P.10.000126
ORF1ab/nsp4416A416AgcGgcT8181AY.460.00843
ORF1ab/nsp4416A416AgcGgcT5581B.1.1770.000724
ORF1ab/nsp4416A416AgcGgcA2681B.1.1770.000342
ORF1ab/nsp4416A416AgcGgcT5473B.1.20.000475
ORF1ab/nsp4416A416AgcGgcA1973B.1.20.000167
ORF1ab/nsp4416A416AgcGgcT6970AY.290.001088
ORF1ab/nsp4416A416AgcGgcA170AY.290.000016
ORF1ab/nsp4416A416AgcGgcT5765AY.440.000347
ORF1ab/nsp4416A416AgcGgcA865AY.440.000049
ORF1ab/nsp4416A416AgcGgcT3539AY.1020.000928
ORF1ab/nsp4416A416AgcGgcA439AY.1020.000106
ORF1ab/nsp4416A416AgcGgcT3839AY.360.005632
ORF1ab/nsp4416A416AgcGgcA139AY.360.000148
ORF1ab/nsp4416A416AgcGgcT3031AY.330.002003
ORF1ab/nsp4416A416AgcGgcA131AY.330.000067
ORF1ab/nsp4416A416AgcGgcA1830B.1.1.4340.006274
ORF1ab/nsp4416A416AgcGgcT1230B.1.1.4340.004183
ORF1ab/nsp4416A416AgcGgcA2728B.1.2320.014508
ORF1ab/nsp4416A416AgcGgcT128B.1.2320.000537
ORF1ab/nsp4416A416AgcGgcC2428B.1.6370.001754
ORF1ab/nsp4416A416AgcGgcT428B.1.6370.000292
ORF1ab/nsp4416A416AgcGgcT2226B.1.4290.000518
ORF1ab/nsp4416A416AgcGgcA426B.1.4290.000094
ORF1ab/nsp4416A416AgcGgcT2324AY.1000.001058
ORF1ab/nsp4416A416AgcGgcA124AY.1000.000046
ORF1ab/nsp4416A416AgcGgcT2424AY.260.000679
ORF1ab/nsp4416A416AgcGgcT1824B.1.5950.004697
ORF1ab/nsp4416A416AgcGgcA624B.1.5950.001566
ORF1ab/nsp4416A416AgcGgcA1721B.1.2580.001131
ORF1ab/nsp4416A416AgcGgcT421B.1.2580.000266
ORF1ab/nsp4416A416AgcGgcA1221B.1.3510.000357
ORF1ab/nsp4416A416AgcGgcT921B.1.3510.000268
ORF1ab/nsp4416A416AgcGgcT1821B.1.5260.000423
ORF1ab/nsp4416A416AgcGgcA321B.1.5260.000071
ORF1ab/nsp4416A416AgcGgcT1921Q.80.003133
ORF1ab/nsp4416A416AgcGgcA221Q.80.00033
ORF1ab/nsp4416A416AgcGgcA1620AY.470.000498
ORF1ab/nsp4416A416AgcGgcT420AY.470.000124
ORF1ab/nsp4416A416AgcGgcT1919AY.750.001064
ORF1ab/nsp4416A416AgcGgcT1818B.1.4270.000909
ORF1ab/nsp4416A416AgcGgcT1517AY.390.000371
ORF1ab/nsp4416A416AgcGgcA217AY.390.000049
ORF1ab/nsp4416A416AgcGgcT1717AY.5.40.004704
ORF1ab/nsp4416A416AgcGgcA1415AY.540.001335
ORF1ab/nsp4416A416AgcGgcT115AY.540.000095
ORF1ab/nsp4416A416AgcGgcA1115B.1.5960.000959
ORF1ab/nsp4416A416AgcGgcT415B.1.5960.000349
ORF1ab/nsp4416A416AgcGgcT1314AY.270.000841
ORF1ab/nsp4416A416AgcGgcA114AY.270.000065
ORF1ab/nsp4416A416AgcGgcT1414AY.50.000289
ORF1ab/nsp4416A416AgcGgcT1112AY.420.000443
ORF1ab/nsp4416A416AgcGgcA112AY.420.00004
ORF1ab/nsp4416A416AgcGgcT1212B.1.1.440.028916
ORF1ab/nsp4416A416AgcGgcT811AY.60.000329
ORF1ab/nsp4416A416AgcGgcA311AY.60.000123
ORF1ab/nsp4416A416AgcGgcT1111B.1.1600.000343
ORF1ab/nsp4416A416AgcGgcT1010P.1.150.002323
ORF1ab/nsp4416A416AgcGgcT99B.1.1.1890.013616
ORF1ab/nsp4416A416AgcGgcT89B.1.1.5190.000318
ORF1ab/nsp4416A416AgcGgcA19B.1.1.5190.00004
ORF1ab/nsp4416A416AgcGgcT88AY.10.003166
ORF1ab/nsp4416A416AgcGgcT78AY.98.10.000339
ORF1ab/nsp4416A416AgcGgcA18AY.98.10.000048
ORF1ab/nsp4416A416AgcGgcA77AY.1130.000997
ORF1ab/nsp4416A416AgcGgcA57AY.1180.000313
ORF1ab/nsp4416A416AgcGgcT27AY.1180.000125
ORF1ab/nsp4416A416AgcGgcT57AY.200.000194
ORF1ab/nsp4416A416AgcGgcA17AY.200.000039
ORF1ab/nsp4416A416AgcGgcC17AY.200.000039
ORF1ab/nsp4416A416AgcGgcT47AY.340.000388
ORF1ab/nsp4416A416AgcGgcA37AY.340.000291
ORF1ab/nsp4416A416AgcGgcT57AY.46.60.000361
ORF1ab/nsp4416A416AgcGgcA27AY.46.60.000144
ORF1ab/nsp4416A416AgcGgcT77B.1.177.830.01037
ORF1ab/nsp4416A416AgcGgcT67B.1.360.000875
ORF1ab/nsp4416A416AgcGgcA17B.1.360.000146
ORF1ab/nsp4416A416AgcGgcT77B.1.617.10.000903
ORF1ab/nsp4416A416AgcGgcT67B.1.6210.000531
ORF1ab/nsp4416A416AgcGgcA17B.1.6210.000089
ORF1ab/nsp4416A416AgcGgcT57C.370.00058
ORF1ab/nsp4416A416AgcGgcA27C.370.000232
ORF1ab/nsp4416A416AgcGgcT460.222222
ORF1ab/nsp4416A416AgcGgcC260.111111
ORF1ab/nsp4416A416AgcGgcA66A.121
ORF1ab/nsp4416A416AgcGgcT66AY.1200.000223
ORF1ab/nsp4416A416AgcGgcT66B.1.1.2140.000333
ORF1ab/nsp4416A416AgcGgcT66B.1.1.330.002525
ORF1ab/nsp4416A416AgcGgcT66B.1.177.810.001136
ORF1ab/nsp4416A416AgcGgcT55AY.1170.000423
ORF1ab/nsp4416A416AgcGgcT35AY.1190.000106
ORF1ab/nsp4416A416AgcGgcA25AY.1190.000071
ORF1ab/nsp4416A416AgcGgcT55AY.1210.000677
ORF1ab/nsp4416A416AgcGgcA35AY.4.20.000065
ORF1ab/nsp4416A416AgcGgcT25AY.4.20.000043
ORF1ab/nsp4416A416AgcGgcT45AY.610.000419
ORF1ab/nsp4416A416AgcGgcA15AY.610.000105
ORF1ab/nsp4416A416AgcGgcT55B.1.1.1580.060976
ORF1ab/nsp4416A416AgcGgcT55B.1.1.2220.00102
ORF1ab/nsp4416A416AgcGgcT45B.1.1.280.001245
ORF1ab/nsp4416A416AgcGgcA15B.1.1.280.000311
ORF1ab/nsp4416A416AgcGgcT55B.1.1.370.000964
ORF1ab/nsp4416A416AgcGgcT55B.1.1.4090.014164
ORF1ab/nsp4416A416AgcGgcT55B.1.1110.005875
ORF1ab/nsp4416A416AgcGgcT55B.1.3670.003962
ORF1ab/nsp4416A416AgcGgcA55B.1.3690.001426
ORF1ab/nsp4416A416AgcGgcT44AY.1110.000733
ORF1ab/nsp4416A416AgcGgcT44AY.230.000279
ORF1ab/nsp4416A416AgcGgcT44AY.450.000487
ORF1ab/nsp4416A416AgcGgcT44AY.46.30.003735
ORF1ab/nsp4416A416AgcGgcT34AY.46.50.000595
ORF1ab/nsp4416A416AgcGgcA14AY.46.50.000198
ORF1ab/nsp4416A416AgcGgcT44AY.920.001149
ORF1ab/nsp4416A416AgcGgcT44B.1.1.1530.004381
ORF1ab/nsp4416A416AgcGgcT44B.1.1.4170.010811
ORF1ab/nsp4416A416AgcGgcT44B.1.1470.003023
ORF1ab/nsp4416A416AgcGgcT34B.1.2430.000209
ORF1ab/nsp4416A416AgcGgcA14B.1.2430.00007
ORF1ab/nsp4416A416AgcGgcT44C.36.30.002269
ORF1ab/nsp4416A416AgcGgcT33AY.1080.003308
ORF1ab/nsp4416A416AgcGgcT33AY.140.000264
ORF1ab/nsp4416A416AgcGgcT33AY.23.10.001252
ORF1ab/nsp4416A416AgcGgcT33AY.39.10.000119
ORF1ab/nsp4416A416AgcGgcT33AY.480.001395
ORF1ab/nsp4416A416AgcGgcT23AY.70.000392
ORF1ab/nsp4416A416AgcGgcA13AY.70.000196
ORF1ab/nsp4416A416AgcGgcT33AY.840.001312
ORF1ab/nsp4416A416AgcGgcT33AY.90.000203
ORF1ab/nsp4416A416AgcGgcT33B0.000383
ORF1ab/nsp4416A416AgcGgcT33B.1.1.1800.032258
ORF1ab/nsp4416A416AgcGgcT33B.1.1.2690.00406
ORF1ab/nsp4416A416AgcGgcT33B.1.1.390.001529
ORF1ab/nsp4416A416AgcGgcT33B.1.1.4640.004418
ORF1ab/nsp4416A416AgcGgcT33B.1.1.4860.004732
ORF1ab/nsp4416A416AgcGgcT33B.1.177.40.000633
ORF1ab/nsp4416A416AgcGgcT33B.1.2210.000213
ORF1ab/nsp4416A416AgcGgcT33B.1.5010.022059
ORF1ab/nsp4416A416AgcGgcT33B.1.5700.008824
ORF1ab/nsp4416A416AgcGgcT33B.1.6260.017143
ORF1ab/nsp4416A416AgcGgcT22A0.000774
ORF1ab/nsp4416A416AgcGgcT22AY.1060.00067
ORF1ab/nsp4416A416AgcGgcT12AY.1160.000287
ORF1ab/nsp4416A416AgcGgcA12AY.1160.000287
ORF1ab/nsp4416A416AgcGgcT22AY.210.003795
ORF1ab/nsp4416A416AgcGgcC22AY.34.10.00102
ORF1ab/nsp4416A416AgcGgcT22AY.5.30.000675
ORF1ab/nsp4416A416AgcGgcA12AY.75.10.00018
ORF1ab/nsp4416A416AgcGgcT12AY.75.10.00018
ORF1ab/nsp4416A416AgcGgcT22AY.9.2.10.003953
ORF1ab/nsp4416A416AgcGgcT22B.1.1.1740.006757
ORF1ab/nsp4416A416AgcGgcT22B.1.1.3050.007722
ORF1ab/nsp4416A416AgcGgcT22B.1.1.3260.003521
ORF1ab/nsp4416A416AgcGgcT22B.1.1.3540.008772
ORF1ab/nsp4416A416AgcGgcT22B.1.1.3920.105263
ORF1ab/nsp4416A416AgcGgcT22B.1.1.4160.00181
ORF1ab/nsp4416A416AgcGgcT22B.1.1.4480.004065
ORF1ab/nsp4416A416AgcGgcT22B.1.1.4620.017241
ORF1ab/nsp4416A416AgcGgcT22B.1.177.600.000437
ORF1ab/nsp4416A416AgcGgcT22B.1.2340.000264
ORF1ab/nsp4416A416AgcGgcA12B.1.258.170.000104
ORF1ab/nsp4416A416AgcGgcT12B.1.258.170.000104
ORF1ab/nsp4416A416AgcGgcT12B.1.2790.000514
ORF1ab/nsp4416A416AgcGgcA12B.1.2790.000514
ORF1ab/nsp4416A416AgcGgcT22B.1.2930.025
ORF1ab/nsp4416A416AgcGgcT22B.1.3500.005865
ORF1ab/nsp4416A416AgcGgcT22B.1.4050.024691
ORF1ab/nsp4416A416AgcGgcT22B.1.4530.006472
ORF1ab/nsp4416A416AgcGgcT22B.1.466.20.000782
ORF1ab/nsp4416A416AgcGgcT22B.1.4700.002809
ORF1ab/nsp4416A416AgcGgcT22B.1.5400.019417
ORF1ab/nsp4416A416AgcGgcT22B.1.5750.000607
ORF1ab/nsp4416A416AgcGgcT22B.1.6090.000959
ORF1ab/nsp4416A416AgcGgcT22B.1.621.10.001012
ORF1ab/nsp4416A416AgcGgcT22C.350.001548
ORF1ab/nsp4416A416AgcGgcT22N.50.003534
ORF1ab/nsp4416A416AgcGgcT12P.1.140.000048
ORF1ab/nsp4416A416AgcGgcA12P.1.140.000048
ORF1ab/nsp4416A416AgcGgcT22P.20.000373
ORF1ab/nsp4416A416AgcGgcT11A.2.50.000499
ORF1ab/nsp4416A416AgcGgcT11AD.20.000219
ORF1ab/nsp4416A416AgcGgcT11AY.1010.00049
ORF1ab/nsp4416A416AgcGgcA11AY.1050.000643
ORF1ab/nsp4416A416AgcGgcT11AY.1100.000113
ORF1ab/nsp4416A416AgcGgcA11AY.120.2.10.000498
ORF1ab/nsp4416A416AgcGgcT11AY.130.000161
ORF1ab/nsp4416A416AgcGgcT11AY.160.00038
ORF1ab/nsp4416A416AgcGgcA11AY.29.10.000221
ORF1ab/nsp4416A416AgcGgcT11AY.350.000233
ORF1ab/nsp4416A416AgcGgcA11AY.400.000964
ORF1ab/nsp4416A416AgcGgcT11AY.410.000294
ORF1ab/nsp4416A416AgcGgcT11AY.46.20.000635
ORF1ab/nsp4416A416AgcGgcT11AY.46.40.000165
ORF1ab/nsp4416A416AgcGgcT11AY.550.000917
ORF1ab/nsp4416A416AgcGgcT11AY.640.000595
ORF1ab/nsp4416A416AgcGgcT11AY.680.000274
ORF1ab/nsp4416A416AgcGgcT11AY.7.10.000113
ORF1ab/nsp4416A416AgcGgcT11AY.7.20.000559
ORF1ab/nsp4416A416AgcGgcT11AY.710.000475
ORF1ab/nsp4416A416AgcGgcT11AY.730.000665
ORF1ab/nsp4416A416AgcGgcT11AY.860.00083
ORF1ab/nsp4416A416AgcGgcT11AY.880.000884
ORF1ab/nsp4416A416AgcGgcT11AY.890.004902
ORF1ab/nsp4416A416AgcGgcT11AY.9.10.000084
ORF1ab/nsp4416A416AgcGgcT11AY.980.000079
ORF1ab/nsp4416A416AgcGgcT11B.1.1.10.000327
ORF1ab/nsp4416A416AgcGgcT11B.1.1.100.001115
ORF1ab/nsp4416A416AgcGgcT11B.1.1.1980.001468
ORF1ab/nsp4416A416AgcGgcT11B.1.1.2000.007463
ORF1ab/nsp4416A416AgcGgcA11B.1.1.2160.00089
ORF1ab/nsp4416A416AgcGgcT11B.1.1.2200.001859
ORF1ab/nsp4416A416AgcGgcT11B.1.1.2320.001815
ORF1ab/nsp4416A416AgcGgcA11B.1.1.2410.00207
ORF1ab/nsp4416A416AgcGgcT11B.1.1.2530.002506
ORF1ab/nsp4416A416AgcGgcT11B.1.1.2970.002237
ORF1ab/nsp4416A416AgcGgcT11B.1.1.3010.001179
ORF1ab/nsp4416A416AgcGgcT11B.1.1.3180.000302
ORF1ab/nsp4416A416AgcGgcA11B.1.1.3490.010309
ORF1ab/nsp4416A416AgcGgcT11B.1.1.3750.011905
ORF1ab/nsp4416A416AgcGgcT11B.1.1.3980.003226
ORF1ab/nsp4416A416AgcGgcT11B.1.1.4040.015873
ORF1ab/nsp4416A416AgcGgcT11B.1.1.4420.018519
ORF1ab/nsp4416A416AgcGgcA11B.1.1.460.004367
ORF1ab/nsp4416A416AgcGgcT11B.1.1.480.002874
ORF1ab/nsp4416A416AgcGgcA11B.1.1.500.000679
ORF1ab/nsp4416A416AgcGgcT11B.1.1.510.001718
ORF1ab/nsp4416A416AgcGgcT11B.1.1.5140.038462
ORF1ab/nsp4416A416AgcGgcA11B.1.1.700.000341
ORF1ab/nsp4416A416AgcGgcT11B.1.1.710.006061
ORF1ab/nsp4416A416AgcGgcT11B.1.1.890.006061
ORF1ab/nsp4416A416AgcGgcT11B.1.160.160.000929
ORF1ab/nsp4416A416AgcGgcT11B.1.177.190.001431
ORF1ab/nsp4416A416AgcGgcT11B.1.177.210.000076
ORF1ab/nsp4416A416AgcGgcA11B.1.177.350.000691
ORF1ab/nsp4416A416AgcGgcA11B.1.177.440.000519
ORF1ab/nsp4416A416AgcGgcT11B.1.177.570.000281
ORF1ab/nsp4416A416AgcGgcT11B.1.177.820.000477
ORF1ab/nsp4416A416AgcGgcA11B.1.2140.003663
ORF1ab/nsp4416A416AgcGgcA11B.1.2400.000216
ORF1ab/nsp4416A416AgcGgcT11B.1.2640.012346
ORF1ab/nsp4416A416AgcGgcT11B.1.2980.002114
ORF1ab/nsp4416A416AgcGgcT11B.1.3050.002151
ORF1ab/nsp4416A416AgcGgcT11B.1.3490.000715
ORF1ab/nsp4416A416AgcGgcT11B.1.351.50.0006
ORF1ab/nsp4416A416AgcGgcA11B.1.36.10.00114
ORF1ab/nsp4416A416AgcGgcT11B.1.36.180.00042
ORF1ab/nsp4416A416AgcGgcT11B.1.36.80.001
ORF1ab/nsp4416A416AgcGgcA11B.1.3770.004566
ORF1ab/nsp4416A416AgcGgcT11B.1.3960.000706
ORF1ab/nsp4416A416AgcGgcT11B.1.3990.001934
ORF1ab/nsp4416A416AgcGgcT11B.1.400.019608
ORF1ab/nsp4416A416AgcGgcT11B.1.4110.003704
ORF1ab/nsp4416A416AgcGgcT11B.1.4150.014286
ORF1ab/nsp4416A416AgcGgcT11B.1.4200.010417
ORF1ab/nsp4416A416AgcGgcT11B.1.4330.003195
ORF1ab/nsp4416A416AgcGgcT11B.1.4560.003268
ORF1ab/nsp4416A416AgcGgcA11B.1.5550.022222
ORF1ab/nsp4416A416AgcGgcA11B.1.5880.00091
ORF1ab/nsp4416A416AgcGgcT11B.1.5900.004545
ORF1ab/nsp4416A416AgcGgcT11B.1.596.10.009346
ORF1ab/nsp4416A416AgcGgcT11B.1.5970.00463
ORF1ab/nsp4416A416AgcGgcA11B.1.6280.000352
ORF1ab/nsp4416A416AgcGgcA11B.30.000831
ORF1ab/nsp4416A416AgcGgcT11C.1.20.004255
ORF1ab/nsp4416A416AgcGgcC11D.20.000075
ORF1ab/nsp4416A416AgcGgcT11P.1.160.000374
ORF1ab/nsp4416A416AgcGgcA11P.1.170.000162
ORF1ab/nsp4416A416AgcGgcT11P.1.70.000319
ORF1ab/nsp4416A416AgcGgcT11Q.10.000126