CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 94 & Codon = gCc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp494V94AV2857AnonsyngTcgCc73321733200.9999868834-8836

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp494V94AgTcgCc7332073321All0.014023
ORF1ab/nsp494V94AgTcgCc4431344313AY.40.06897
ORF1ab/nsp494V94AgTcgCc93029302AY.4.20.201748
ORF1ab/nsp494V94AgTcgCc49044904B.1.617.20.018466
ORF1ab/nsp494V94AgTcgCc33723372AY.430.01494
ORF1ab/nsp494V94AgTcgCc25982598AY.50.053647
ORF1ab/nsp494V94AgTcgCc16251625AY.1200.060416
ORF1ab/nsp494V94AgTcgCc15751575AY.4.2.10.234654
ORF1ab/nsp494V94AgTcgCc11191119AY.60.046023
ORF1ab/nsp494V94AgTcgCc612612AY.46.50.121429
ORF1ab/nsp494V94AgTcgCc568568AY.1110.104029
ORF1ab/nsp494V94AgTcgCc311311AY.340.030156
ORF1ab/nsp494V94AgTcgCc310310AY.980.024489
ORF1ab/nsp494V94AgTcgCc300300AY.360.044464
ORF1ab/nsp494V94AgTcgCc210210AY.9.20.007713
ORF1ab/nsp494V94AgTcgCc160160AY.30.001591
ORF1ab/nsp494V94AgTcgCc127127AY.98.10.006151
ORF1ab/nsp494V94AgTcgCc116116AY.420.004667
ORF1ab/nsp494V94AgTcgCc101101AY.70.019796
ORF1ab/nsp494V94AgTcgCc9898AY.250.000589
ORF1ab/nsp494V94AgTcgCc9898AY.90.006624
ORF1ab/nsp494V94AgTcgCc9797AY.1090.071746
ORF1ab/nsp494V94AgTcgCc9393AY.4.50.009997
ORF1ab/nsp494V94AgTcgCc8989AY.900.060917
ORF1ab/nsp494V94AgTcgCc7373AY.1030.000453
ORF1ab/nsp494V94AgTcgCc6969AY.440.00042
ORF1ab/nsp494V94AgTcgCc6565AY.390.001606
ORF1ab/nsp494V94AgTcgCc6464AY.46.60.004621
ORF1ab/nsp494V94AgTcgCc6262AY.46.40.010199
ORF1ab/nsp494V94AgTcgCc5858AY.330.003873
ORF1ab/nsp494V94AgTcgCc5151AY.790.061743
ORF1ab/nsp494V94AgTcgCc4545AY.4.10.033186
ORF1ab/nsp494V94AgTcgCc4040AY.750.002241
ORF1ab/nsp494V94AgTcgCc3535AY.5.30.011808
ORF1ab/nsp494V94AgTcgCc3030AY.460.003122
ORF1ab/nsp494V94AgTcgCc2626AY.470.000809
ORF1ab/nsp494V94AgTcgCc2525AY.870.020816
ORF1ab/nsp494V94AgTcgCc2525B.1.1.70.000022
ORF1ab/nsp494V94AgTcgCc2424AY.1080.026461
ORF1ab/nsp494V94AgTcgCc2323B.1.1600.000717
ORF1ab/nsp494V94AgTcgCc2222AY.410.006467
ORF1ab/nsp494V94AgTcgCc2222AY.730.014637
ORF1ab/nsp494V94AgTcgCc2121AY.9.10.001758
ORF1ab/nsp494V94AgTcgCc2020AY.1210.002706
ORF1ab/nsp494V94AgTcgCc2020AY.5.40.005534
ORF1ab/nsp494V94AgTcgCc1717AY.120.10.005457
ORF1ab/nsp494V94AgTcgCc1616AY.46.30.014939
ORF1ab/nsp494V94AgTcgCc1515AY.4.40.006137
ORF1ab/nsp494V94AgTcgCc1515AY.910.010957
ORF1ab/nsp494V94AgTcgCc1414AY.1100.001578
ORF1ab/nsp494V94AgTcgCc1313AY.1020.000345
ORF1ab/nsp494V94AgTcgCc1313AY.1060.004354
ORF1ab/nsp494V94AgTcgCc1212AY.600.011257
ORF1ab/nsp494V94AgTcgCc1111AY.1180.000689
ORF1ab/nsp494V94AgTcgCc1111AY.540.001049
ORF1ab/nsp494V94AgTcgCc1111AY.940.004869
ORF1ab/nsp494V94AgTcgCc1010AY.970.017007
ORF1ab/nsp494V94AgTcgCc1010B.10.000092
ORF1ab/nsp494V94AgTcgCc99AY.1050.005788
ORF1ab/nsp494V94AgTcgCc99AY.200.00035
ORF1ab/nsp494V94AgTcgCc99AY.230.000628
ORF1ab/nsp494V94AgTcgCc99AY.46.20.005718
ORF1ab/nsp494V94AgTcgCc88AY.7.10.000902
ORF1ab/nsp494V94AgTcgCc88AY.880.007073
ORF1ab/nsp494V94AgTcgCc88B.1.20.00007
ORF1ab/nsp494V94AgTcgCc77AY.990.007345
ORF1ab/nsp494V94AgTcgCc66AY.1140.001387
ORF1ab/nsp494V94AgTcgCc66AY.4.30.005051
ORF1ab/nsp494V94AgTcgCc66AY.670.002786
ORF1ab/nsp494V94AgTcgCc66AY.680.001642
ORF1ab/nsp494V94AgTcgCc55AY.1040.009921
ORF1ab/nsp494V94AgTcgCc44AY.1190.000141
ORF1ab/nsp494V94AgTcgCc44AY.480.00186
ORF1ab/nsp494V94AgTcgCc44AY.920.001149
ORF1ab/nsp494V94AgTcgCc44B.1.1770.000053
ORF1ab/nsp494V94AgTcgCc44C.300.006908
ORF1ab/nsp494V94AgTcgCc44P.10.000063
ORF1ab/nsp494V94AgTcgCc33AY.1130.000427
ORF1ab/nsp494V94AgTcgCc33AY.116.10.000934
ORF1ab/nsp494V94AgTcgCc33AY.130.000483
ORF1ab/nsp494V94AgTcgCc33AY.260.000085
ORF1ab/nsp494V94AgTcgCc33AY.39.10.000119
ORF1ab/nsp494V94AgTcgCc33AY.610.000314
ORF1ab/nsp494V94AgTcgCc33AY.7.20.001678
ORF1ab/nsp494V94AgTcgCc33AY.700.000626
ORF1ab/nsp494V94AgTcgCc33AY.710.001425
ORF1ab/nsp494V94AgTcgCc33AY.740.000347
ORF1ab/nsp494V94AgTcgCc33AY.850.001282
ORF1ab/nsp494V94AgTcgCc33AY.890.014706
ORF1ab/nsp494V94AgTcgCc22AY.1070.000932
ORF1ab/nsp494V94AgTcgCc22AY.1160.000574
ORF1ab/nsp494V94AgTcgCc22AY.1170.000169
ORF1ab/nsp494V94AgTcgCc22AY.140.000176
ORF1ab/nsp494V94AgTcgCc22AY.270.000129
ORF1ab/nsp494V94AgTcgCc22AY.450.000243
ORF1ab/nsp494V94AgTcgCc22AY.46.10.002053
ORF1ab/nsp494V94AgTcgCc22AY.630.000774
ORF1ab/nsp494V94AgTcgCc22AY.770.002255
ORF1ab/nsp494V94AgTcgCc22AY.80.001212
ORF1ab/nsp494V94AgTcgCc22AY.860.00166
ORF1ab/nsp494V94AgTcgCc22AZ.50.007018
ORF1ab/nsp494V94AgTcgCc22B.1.10.000036
ORF1ab/nsp494V94AgTcgCc22B.1.2430.000139
ORF1ab/nsp494V94AgTcgCc22B.1.6280.000705
ORF1ab/nsp494V94AgTcgCc22D.20.00015
ORF1ab/nsp494V94AgTcgCc22P.1.120.000968
ORF1ab/nsp494V94AgTcgCc22Q.70.002222
ORF1ab/nsp494V94AgTcgCc11AY.1000.000046
ORF1ab/nsp494V94AgTcgCc11AY.120.000316
ORF1ab/nsp494V94AgTcgCc11AY.120.20.001285
ORF1ab/nsp494V94AgTcgCc11AY.210.001898
ORF1ab/nsp494V94AgTcgCc11AY.220.002092
ORF1ab/nsp494V94AgTcgCc11AY.23.10.000417
ORF1ab/nsp494V94AgTcgCc11AY.3.10.000085
ORF1ab/nsp494V94AgTcgCc11AY.320.000532
ORF1ab/nsp494V94AgTcgCc11AY.370.000316
ORF1ab/nsp494V94AgTcgCc11AY.380.000499
ORF1ab/nsp494V94AgTcgCc11AY.39.20.001541
ORF1ab/nsp494V94AgTcgCc11AY.400.000964
ORF1ab/nsp494V94AgTcgCc11AY.500.000799
ORF1ab/nsp494V94AgTcgCc11AY.520.000814
ORF1ab/nsp494V94AgTcgCc11AY.560.001605
ORF1ab/nsp494V94AgTcgCc11AY.620.000436
ORF1ab/nsp494V94AgTcgCc11AY.640.000595
ORF1ab/nsp494V94AgTcgCc11AY.650.000533
ORF1ab/nsp494V94AgTcgCc11AY.660.00107
ORF1ab/nsp494V94AgTcgCc11AY.720.001361
ORF1ab/nsp494V94AgTcgCc11AY.780.001541
ORF1ab/nsp494V94AgTcgCc11AY.820.001357
ORF1ab/nsp494V94AgTcgCc11B.1.1.2220.000204
ORF1ab/nsp494V94AgTcgCc11B.1.1.2690.001353
ORF1ab/nsp494V94AgTcgCc11B.1.1.2840.000107
ORF1ab/nsp494V94AgTcgCc11B.1.1.3620.005618
ORF1ab/nsp494V94AgTcgCc11B.1.160.160.000929
ORF1ab/nsp494V94AgTcgCc11B.1.3510.00003
ORF1ab/nsp494V94AgTcgCc11B.1.3630.012987
ORF1ab/nsp494V94AgTcgCc11B.1.3690.000285
ORF1ab/nsp494V94AgTcgCc11B.1.3980.002976
ORF1ab/nsp494V94AgTcgCc11B.1.5240.001406
ORF1ab/nsp494V94AgTcgCc11B.1.5670.003333
ORF1ab/nsp494V94AgTcgCc11B.1.5960.000087
ORF1ab/nsp494V94AgTcgCc11B.1.6120.002653
ORF1ab/nsp494V94AgTcgCc11B.1.617.10.000129
ORF1ab/nsp494V94AgTcgCc11B.1.6210.000089
ORF1ab/nsp494V94AgTcgCc11B.1.6370.000073
ORF1ab/nsp494V94AgTcgCc11B.6.60.000889
ORF1ab/nsp494V94AgTcgCc11P.1.70.000319
ORF1ab/nsp494V94AgTcgCc11Q.30.000145
ORF1ab/nsp494V94AgTcgCc11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.