CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 92

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp492A92VA2855VnonsyngCtgTt29057290560.9999668828-8830
ORF1ab/nsp492A92VA2855VnonsyngCTgTA2905710.00003441518828-8830
ORF1ab/nsp492A92DA2855DnonsyngCtgAt1549154918828-8830
ORF1ab/nsp492A92TA2855TnonsynGctAct4224190.9928918828-8830
ORF1ab/nsp492A92TA2855TnonsynGcTAcC42220.004739348828-8830
ORF1ab/nsp492A92TA2855TnonsynGcTAcA42210.002369678828-8830
ORF1ab/nsp492A92AA2855AsyngcTgcC4032340.5806458828-8830
ORF1ab/nsp492A92AA2855AsyngcTgcA4031590.3945418828-8830
ORF1ab/nsp492A92AA2855AsyngcTgcG403100.02481398828-8830
ORF1ab/nsp492A92delA2855deldelGCT---12112118828-8830
ORF1ab/nsp492A92del1A2855del1delgCtg-t797918828-8830
ORF1ab/nsp492A92SA2855SnonsynGctTct757518828-8830
ORF1ab/nsp492A92GA2855GnonsyngCtgGt202018828-8830
ORF1ab/nsp492A92PA2855PnonsynGctCct5518828-8830
ORF1ab/nsp492A92IA2855InonsynGCtATt2218828-8830
ORF1ab/nsp492A92del2A2855del2delgCTg--210.58828-8830
ORF1ab/nsp492A92del2A2855del2delGCt--t210.58828-8830
ORF1ab/nsp492A92LA2855LnonsynGCtCTt1118828-8830

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp492A92VgCtgTt2905629057All0.005557
ORF1ab/nsp492A92VgCTgTA129057All0
ORF1ab/nsp492A92VgCtgTt2482824829AY.1190.876633
ORF1ab/nsp492A92VgCTgTA124829AY.1190.000035
ORF1ab/nsp492A92VgCtgTt23162316B.1.617.20.008721
ORF1ab/nsp492A92DgCtgAt15491549All0.000296
ORF1ab/nsp492A92DgCtgAt964964AY.40.0015
ORF1ab/nsp492A92VgCtgTt842842AY.40.001311
ORF1ab/nsp492A92TGctAct419422All0.00008
ORF1ab/nsp492A92TGcTAcC2422All0
ORF1ab/nsp492A92TGcTAcA1422All0
ORF1ab/nsp492A92AgcTgcC234403All0.000045
ORF1ab/nsp492A92AgcTgcA159403All0.00003
ORF1ab/nsp492A92AgcTgcG10403All0.000002
ORF1ab/nsp492A92TGctAct198198AY.9.20.007272
ORF1ab/nsp492A92VgCtgTt195195B.1.1.70.000175
ORF1ab/nsp492A92VgCtgTt171171B.1.20.001506
ORF1ab/nsp492A92DgCtgAt166166AY.50.003428
ORF1ab/nsp492A92DgCtgAt155155AY.4.20.003362
ORF1ab/nsp492A92delGCT---121121All0.000023
ORF1ab/nsp492A92AgcTgcC93118B.1.1.70.000083
ORF1ab/nsp492A92AgcTgcA23118B.1.1.70.000021
ORF1ab/nsp492A92AgcTgcG2118B.1.1.70.000002
ORF1ab/nsp492A92TGctAct9595P.10.001497
ORF1ab/nsp492A92DgCtgAt8585B.1.617.20.00032
ORF1ab/nsp492A92del1gCtg-t7979All0.000015
ORF1ab/nsp492A92AgcTgcA5576AY.40.000086
ORF1ab/nsp492A92AgcTgcC2176AY.40.000033
ORF1ab/nsp492A92SGctTct7575All0.000014
ORF1ab/nsp492A92VgCtgTt7272AY.4.20.001562
ORF1ab/nsp492A92del1gCtg-t6666B.1.1.70.000059
ORF1ab/nsp492A92VgCtgTt4545AY.430.000199
ORF1ab/nsp492A92VgCtgTt4545AY.470.0014
ORF1ab/nsp492A92VgCtgTt4343AY.250.000259
ORF1ab/nsp492A92delGCT---4242B.1.1.70.000038
ORF1ab/nsp492A92DgCtgAt4040AY.430.000177
ORF1ab/nsp492A92VgCtgTt4040P.10.00063
ORF1ab/nsp492A92VgCtgTt3939AY.30.000388
ORF1ab/nsp492A92VgCtgTt3333AY.440.000201
ORF1ab/nsp492A92VgCtgTt2626AY.330.001736
ORF1ab/nsp492A92DgCtgAt2626AY.60.001069
ORF1ab/nsp492A92VgCtgTt2121AY.1030.00013
ORF1ab/nsp492A92VgCtgTt2121AY.390.000519
ORF1ab/nsp492A92GgCtgGt2020All0.000004
ORF1ab/nsp492A92VgCtgTt1919AY.1170.001606
ORF1ab/nsp492A92DgCtgAt1919AY.1200.000706
ORF1ab/nsp492A92DgCtgAt1919AY.4.2.10.002831
ORF1ab/nsp492A92TGctAct1919B.1.1.70.000017
ORF1ab/nsp492A92SGctTct1818AY.260.00051
ORF1ab/nsp492A92GgCtgGt1717AY.250.000102
ORF1ab/nsp492A92AgcTgcA1717AY.650.009062
ORF1ab/nsp492A92AgcTgcA1717B.1.4290.0004
ORF1ab/nsp492A92SGctTct1414B.1.10.000254
ORF1ab/nsp492A92VgCtgTt1414B.1.10.000254
ORF1ab/nsp492A92TGctAct1212AY.250.000072
ORF1ab/nsp492A92SGctTct1212AY.40.000019
ORF1ab/nsp492A92VgCtgTt1212B.10.00011
ORF1ab/nsp492A92VgCtgTt1111AY.340.001067
ORF1ab/nsp492A92delGCT---1111AY.40.000017
ORF1ab/nsp492A92delGCT---1111AY.430.000049
ORF1ab/nsp492A92AgcTgcC1111AY.440.000067
ORF1ab/nsp492A92VgCtgTt1111AY.980.000869
ORF1ab/nsp492A92AgcTgcC910AY.1030.000056
ORF1ab/nsp492A92AgcTgcA110AY.1030.000006
ORF1ab/nsp492A92TGctAct1010AY.40.000016
ORF1ab/nsp492A92AgcTgcC1010B.1.1.2140.000555
ORF1ab/nsp492A92VgCtgTt1010B.1.5800.04065
ORF1ab/nsp492A92AgcTgcC710B.1.617.20.000026
ORF1ab/nsp492A92AgcTgcA310B.1.617.20.000011
ORF1ab/nsp492A92VgCtgTt99AY.1100.001014
ORF1ab/nsp492A92VgCtgTt99AY.4.50.000967
ORF1ab/nsp492A92VgCtgTt99AY.450.001095
ORF1ab/nsp492A92VgCtgTt99AY.460.000937
ORF1ab/nsp492A92VgCtgTt99AY.740.001041
ORF1ab/nsp492A92AgcTgcC59B.10.000046
ORF1ab/nsp492A92AgcTgcA39B.10.000027
ORF1ab/nsp492A92AgcTgcG19B.10.000009
ORF1ab/nsp492A92delGCT---99B.1.1770.000119
ORF1ab/nsp492A92VgCtgTt88AY.920.002298
ORF1ab/nsp492A92TGctAct88AY.98.10.000387
ORF1ab/nsp492A92TGctAct88B.10.000073
ORF1ab/nsp492A92VgCtgTt88Q.10.001011
ORF1ab/nsp492A92VgCtgTt77AY.1130.000997
ORF1ab/nsp492A92VgCtgTt77AY.230.000488
ORF1ab/nsp492A92AgcTgcC37AY.230.000209
ORF1ab/nsp492A92AgcTgcA37AY.230.000209
ORF1ab/nsp492A92AgcTgcG17AY.230.00007
ORF1ab/nsp492A92VgCtgTt77AY.260.000198
ORF1ab/nsp492A92AgcTgcC67B.1.20.000053
ORF1ab/nsp492A92AgcTgcA17B.1.20.000009
ORF1ab/nsp492A92TGctAct77B.1.617.20.000026
ORF1ab/nsp492A92SGctTct77P.10.00011
ORF1ab/nsp492A92TGctAct77P.1.120.003388
ORF1ab/nsp492A92VgCtgTt66AY.1180.000376
ORF1ab/nsp492A92VgCtgTt66AY.1200.000223
ORF1ab/nsp492A92VgCtgTt66AY.50.000124
ORF1ab/nsp492A92DgCtgAt66AY.980.000474
ORF1ab/nsp492A92PGctCct55All0.000001
ORF1ab/nsp492A92VgCtgTt55AY.200.000194
ORF1ab/nsp492A92AgcTgcC55AY.3.10.000426
ORF1ab/nsp492A92SGctTct55AY.4.20.000108
ORF1ab/nsp492A92delGCT---55AY.4.50.000537
ORF1ab/nsp492A92VgCtgTt55AY.750.00028
ORF1ab/nsp492A92AgcTgcC35B.1.10.000054
ORF1ab/nsp492A92AgcTgcG25B.1.10.000036
ORF1ab/nsp492A92VgCtgTt55B.1.1.3220.04386
ORF1ab/nsp492A92TGctAct55B.1.5250.000566
ORF1ab/nsp492A92VgCtgTt55B.1.5260.000118
ORF1ab/nsp492A92TGctAct240.111111
ORF1ab/nsp492A92TGcTAcC240.111111
ORF1ab/nsp492A92DgCtgAt44AY.1080.00441
ORF1ab/nsp492A92DgCtgAt44AY.1110.000733
ORF1ab/nsp492A92DgCtgAt44AY.360.000593
ORF1ab/nsp492A92VgCtgTt44AY.420.000161
ORF1ab/nsp492A92AgcTgcC44AY.420.000161
ORF1ab/nsp492A92AgcTgcC44AY.540.000381
ORF1ab/nsp492A92VgCtgTt44AY.60.000165
ORF1ab/nsp492A92DgCtgAt44AY.90.00027
ORF1ab/nsp492A92AgcTgcC44AY.90.00027
ORF1ab/nsp492A92AgcTgcC44AY.9.10.000335
ORF1ab/nsp492A92DgCtgAt44AY.98.10.000194
ORF1ab/nsp492A92AgcTgcA44B.1.1.2070.004728
ORF1ab/nsp492A92AgcTgcA34B.1.4270.000151
ORF1ab/nsp492A92AgcTgcC14B.1.4270.00005
ORF1ab/nsp492A92VgCtgTt44B.1.4290.000094
ORF1ab/nsp492A92TGctAct44P.1.140.000191
ORF1ab/nsp492A92AgcTgcA44P.1.60.007782
ORF1ab/nsp492A92AgcTgcC24R.10.00018
ORF1ab/nsp492A92AgcTgcA24R.10.00018
ORF1ab/nsp492A92DgCtgAt33AY.1030.000019
ORF1ab/nsp492A92TGctAct33AY.1210.000406
ORF1ab/nsp492A92VgCtgTt33AY.23.10.001252
ORF1ab/nsp492A92VgCtgTt33AY.290.000047
ORF1ab/nsp492A92SGctTct33AY.290.000047
ORF1ab/nsp492A92VgCtgTt33AY.360.000445
ORF1ab/nsp492A92DgCtgAt33AY.390.000074
ORF1ab/nsp492A92DgCtgAt33AY.420.000121
ORF1ab/nsp492A92DgCtgAt33AY.440.000018
ORF1ab/nsp492A92TGctAct33AY.440.000018
ORF1ab/nsp492A92DgCtgAt33AY.46.50.000595
ORF1ab/nsp492A92VgCtgTt33AY.46.60.000217
ORF1ab/nsp492A92AgcTgcC33AY.680.000821
ORF1ab/nsp492A92DgCtgAt33AY.70.000588
ORF1ab/nsp492A92VgCtgTt33AY.75.10.000541
ORF1ab/nsp492A92VgCtgTt33AY.810.005976
ORF1ab/nsp492A92VgCtgTt33AY.9.20.00011
ORF1ab/nsp492A92SGctTct33B.10.000027
ORF1ab/nsp492A92delGCT---33B.10.000027
ORF1ab/nsp492A92AgcTgcC33B.1.1110.003525
ORF1ab/nsp492A92VgCtgTt33B.1.177.190.004292
ORF1ab/nsp492A92VgCtgTt33B.1.177.600.000655
ORF1ab/nsp492A92del1gCtg-t33B.1.177.820.001432
ORF1ab/nsp492A92AgcTgcC33B.1.177.820.001432
ORF1ab/nsp492A92TGctAct33B.1.20.000026
ORF1ab/nsp492A92VgCtgTt33B.1.3510.000089
ORF1ab/nsp492A92del1gCtg-t33B.1.3510.000089
ORF1ab/nsp492A92AgcTgcA23B.1.5260.000047
ORF1ab/nsp492A92AgcTgcC13B.1.5260.000024
ORF1ab/nsp492A92VgCtgTt33B.1.5960.000261
ORF1ab/nsp492A92TGctAct33N.50.0053
ORF1ab/nsp492A92AgcTgcG13P.10.000016
ORF1ab/nsp492A92AgcTgcA13P.10.000016
ORF1ab/nsp492A92AgcTgcC13P.10.000016
ORF1ab/nsp492A92AgcTgcC220.111111
ORF1ab/nsp492A92IGCtATt220.111111
ORF1ab/nsp492A92SGctTct22A.10.000564
ORF1ab/nsp492A92delGCT---22A.20.001324
ORF1ab/nsp492A92IGCtATt22All0
ORF1ab/nsp492A92del2gCTg--12All0
ORF1ab/nsp492A92del2GCt--t12All0
ORF1ab/nsp492A92VgCtgTt22AY.1000.000092
ORF1ab/nsp492A92TGctAct22AY.1020.000053
ORF1ab/nsp492A92VgCtgTt22AY.1040.003968
ORF1ab/nsp492A92AgcTgcC22AY.1130.000285
ORF1ab/nsp492A92TGctAct22AY.1170.000169
ORF1ab/nsp492A92DgCtgAt22AY.1180.000125
ORF1ab/nsp492A92VgCtgTt22AY.160.000759
ORF1ab/nsp492A92VgCtgTt22AY.240.000862
ORF1ab/nsp492A92delGCT---22AY.250.000012
ORF1ab/nsp492A92AgcTgcA12AY.250.000006
ORF1ab/nsp492A92AgcTgcC12AY.250.000006
ORF1ab/nsp492A92AgcTgcC12AY.30.00001
ORF1ab/nsp492A92AgcTgcG12AY.30.00001
ORF1ab/nsp492A92AgcTgcC22AY.330.000134
ORF1ab/nsp492A92TGctAct22AY.4.20.000043
ORF1ab/nsp492A92DgCtgAt22AY.46.60.000144
ORF1ab/nsp492A92del1gCtg-t22AY.520.001629
ORF1ab/nsp492A92VgCtgTt22AY.690.000373
ORF1ab/nsp492A92VgCtgTt22AY.700.000417
ORF1ab/nsp492A92TGctAct22AY.850.000854
ORF1ab/nsp492A92VgCtgTt22AY.90.000135
ORF1ab/nsp492A92VgCtgTt22AY.9.10.000167
ORF1ab/nsp492A92TGctAct22AY.930.000546
ORF1ab/nsp492A92VgCtgTt22AY.950.001522
ORF1ab/nsp492A92AgcTgcC12AY.980.000079
ORF1ab/nsp492A92AgcTgcA12AY.980.000079
ORF1ab/nsp492A92TGctAct22B.1.10.000036
ORF1ab/nsp492A92AgcTgcA22B.1.1.10.000653
ORF1ab/nsp492A92VgCtgTt22B.1.1.2140.000111
ORF1ab/nsp492A92VgCtgTt22B.1.1.5190.000079
ORF1ab/nsp492A92DgCtgAt22B.1.1.70.000002
ORF1ab/nsp492A92del1gCtg-t22B.1.1600.000062
ORF1ab/nsp492A92VgCtgTt22B.1.1770.000026
ORF1ab/nsp492A92delGCT---22B.1.20.000018
ORF1ab/nsp492A92TGctAct22B.1.3510.000059
ORF1ab/nsp492A92AgcTgcC12B.1.466.20.000391
ORF1ab/nsp492A92AgcTgcA12B.1.466.20.000391
ORF1ab/nsp492A92VgCtgTt22B.1.5250.000226
ORF1ab/nsp492A92TGctAct22B.1.5400.019417
ORF1ab/nsp492A92VgCtgTt22P.1.160.000748
ORF1ab/nsp492A92TGctAct11A.10.000282
ORF1ab/nsp492A92SGctTct11A.20.000662
ORF1ab/nsp492A92VgCtgTt11A.270.001656
ORF1ab/nsp492A92VgCtgTt11AD.20.000219
ORF1ab/nsp492A92LGCtCTt11All0
ORF1ab/nsp492A92DgCtgAt11AY.1000.000046
ORF1ab/nsp492A92AgcTgcC11AY.1010.00049
ORF1ab/nsp492A92VgCtgTt11AY.1020.000027
ORF1ab/nsp492A92SGctTct11AY.1020.000027
ORF1ab/nsp492A92VgCtgTt11AY.1060.000335
ORF1ab/nsp492A92DgCtgAt11AY.1060.000335
ORF1ab/nsp492A92VgCtgTt11AY.1090.00074
ORF1ab/nsp492A92DgCtgAt11AY.1090.00074
ORF1ab/nsp492A92DgCtgAt11AY.1100.000113
ORF1ab/nsp492A92delGCT---11AY.1110.000183
ORF1ab/nsp492A92VgCtgTt11AY.1160.000287
ORF1ab/nsp492A92DgCtgAt11AY.1170.000085
ORF1ab/nsp492A92AgcTgcA11AY.1170.000085
ORF1ab/nsp492A92DgCtgAt11AY.1190.000035
ORF1ab/nsp492A92AgcTgcC11AY.1190.000035
ORF1ab/nsp492A92VgCtgTt11AY.1210.000135
ORF1ab/nsp492A92TGctAct11AY.140.000088
ORF1ab/nsp492A92AgcTgcG11AY.160.00038
ORF1ab/nsp492A92delGCT---11AY.190.00114
ORF1ab/nsp492A92TGctAct11AY.230.00007
ORF1ab/nsp492A92AgcTgcC11AY.23.10.000417
ORF1ab/nsp492A92TGctAct11AY.260.000028
ORF1ab/nsp492A92AgcTgcC11AY.260.000028
ORF1ab/nsp492A92DgCtgAt11AY.30.00001
ORF1ab/nsp492A92delGCT---11AY.330.000067
ORF1ab/nsp492A92DgCtgAt11AY.330.000067
ORF1ab/nsp492A92SGctTct11AY.330.000067
ORF1ab/nsp492A92AgcTgcC11AY.340.000097
ORF1ab/nsp492A92delGCT---11AY.340.000097
ORF1ab/nsp492A92VgCtgTt11AY.350.000233
ORF1ab/nsp492A92VgCtgTt11AY.370.000316
ORF1ab/nsp492A92VgCtgTt11AY.380.000499
ORF1ab/nsp492A92TGctAct11AY.390.000025
ORF1ab/nsp492A92VgCtgTt11AY.39.10.00004
ORF1ab/nsp492A92VgCtgTt11AY.4.30.000842
ORF1ab/nsp492A92DgCtgAt11AY.4.40.000409
ORF1ab/nsp492A92DgCtgAt11AY.4.50.000107
ORF1ab/nsp492A92AgcTgcA11AY.430.000004
ORF1ab/nsp492A92GgCtgGt11AY.440.000006
ORF1ab/nsp492A92delGCT---11AY.440.000006
ORF1ab/nsp492A92AgcTgcG11AY.450.000122
ORF1ab/nsp492A92TGctAct11AY.470.000031
ORF1ab/nsp492A92DgCtgAt11AY.470.000031
ORF1ab/nsp492A92delGCT---11AY.50.000021
ORF1ab/nsp492A92TGctAct11AY.50.000021
ORF1ab/nsp492A92VgCtgTt11AY.5.30.000337
ORF1ab/nsp492A92DgCtgAt11AY.5.40.000277
ORF1ab/nsp492A92VgCtgTt11AY.540.000095
ORF1ab/nsp492A92VgCtgTt11AY.570.000656
ORF1ab/nsp492A92VgCtgTt11AY.590.00053
ORF1ab/nsp492A92SGctTct11AY.590.00053
ORF1ab/nsp492A92AgcTgcC11AY.60.000041
ORF1ab/nsp492A92VgCtgTt11AY.610.000105
ORF1ab/nsp492A92AgcTgcC11AY.610.000105
ORF1ab/nsp492A92VgCtgTt11AY.620.000436
ORF1ab/nsp492A92DgCtgAt11AY.620.000436
ORF1ab/nsp492A92VgCtgTt11AY.640.000595
ORF1ab/nsp492A92DgCtgAt11AY.7.10.000113
ORF1ab/nsp492A92VgCtgTt11AY.7.10.000113
ORF1ab/nsp492A92delGCT---11AY.720.001361
ORF1ab/nsp492A92DgCtgAt11AY.750.000056
ORF1ab/nsp492A92AgcTgcC11AY.790.001211
ORF1ab/nsp492A92DgCtgAt11AY.790.001211
ORF1ab/nsp492A92DgCtgAt11AY.80.000606
ORF1ab/nsp492A92DgCtgAt11AY.870.000833
ORF1ab/nsp492A92delGCT---11AY.90.000068
ORF1ab/nsp492A92delGCT---11AY.9.20.000037
ORF1ab/nsp492A92VgCtgTt11AY.910.00073
ORF1ab/nsp492A92VgCtgTt11AY.930.000273
ORF1ab/nsp492A92VgCtgTt11AY.940.000443
ORF1ab/nsp492A92delGCT---11AY.98.10.000048
ORF1ab/nsp492A92delGCT---11AY.99.10.001553
ORF1ab/nsp492A92AgcTgcA11AY.99.20.000092
ORF1ab/nsp492A92VgCtgTt11AZ.50.003509
ORF1ab/nsp492A92SGctTct11B0.000128
ORF1ab/nsp492A92VgCtgTt11B0.000128
ORF1ab/nsp492A92PGctCct11B.10.000009
ORF1ab/nsp492A92DgCtgAt11B.10.000009
ORF1ab/nsp492A92del2GCt--t11B.1.10.000018
ORF1ab/nsp492A92delGCT---11B.1.10.000018
ORF1ab/nsp492A92VgCtgTt11B.1.1.100.001115
ORF1ab/nsp492A92VgCtgTt11B.1.1.1210.002427
ORF1ab/nsp492A92VgCtgTt11B.1.1.1350.004695
ORF1ab/nsp492A92AgcTgcA11B.1.1.1410.002012
ORF1ab/nsp492A92VgCtgTt11B.1.1.1590.004673
ORF1ab/nsp492A92VgCtgTt11B.1.1.1920.002309
ORF1ab/nsp492A92VgCtgTt11B.1.1.2220.000204
ORF1ab/nsp492A92TGctAct11B.1.1.280.000311
ORF1ab/nsp492A92delGCT---11B.1.1.3060.000438
ORF1ab/nsp492A92delGCT---11B.1.1.3110.000358
ORF1ab/nsp492A92delGCT---11B.1.1.3150.008475
ORF1ab/nsp492A92AgcTgcA11B.1.1.3160.000925
ORF1ab/nsp492A92VgCtgTt11B.1.1.3330.001076
ORF1ab/nsp492A92VgCtgTt11B.1.1.3620.005618
ORF1ab/nsp492A92delGCT---11B.1.1.4090.002833
ORF1ab/nsp492A92AgcTgcA11B.1.1.440.00241
ORF1ab/nsp492A92VgCtgTt11B.1.1.4610.012048
ORF1ab/nsp492A92AgcTgcC11B.1.1.5120.028571
ORF1ab/nsp492A92delGCT---11B.1.1.5190.00004
ORF1ab/nsp492A92SGctTct11B.1.1.5190.00004
ORF1ab/nsp492A92AgcTgcC11B.1.1.5190.00004
ORF1ab/nsp492A92TGctAct11B.1.1.520.012195
ORF1ab/nsp492A92SGctTct11B.1.1.70.000001
ORF1ab/nsp492A92GgCtgGt11B.1.1.70.000001
ORF1ab/nsp492A92del2gCTg--11B.1.1.70.000001
ORF1ab/nsp492A92PGctCct11B.1.1.70.000001
ORF1ab/nsp492A92delGCT---11B.1.1.700.000341
ORF1ab/nsp492A92TGctAct11B.1.1050.009615
ORF1ab/nsp492A92AgcTgcA11B.1.1180.006711
ORF1ab/nsp492A92PGctCct11B.1.130.002375
ORF1ab/nsp492A92DgCtgAt11B.1.1390.000733
ORF1ab/nsp492A92delGCT---11B.1.1400.018868
ORF1ab/nsp492A92SGctTct11B.1.1570.002985
ORF1ab/nsp492A92DgCtgAt11B.1.1600.000031
ORF1ab/nsp492A92AgcTgcA11B.1.1600.000031
ORF1ab/nsp492A92VgCtgTt11B.1.1600.000031
ORF1ab/nsp492A92delGCT---11B.1.160.230.004831
ORF1ab/nsp492A92VgCtgTt11B.1.160.80.001289
ORF1ab/nsp492A92SGctTct11B.1.1770.000013
ORF1ab/nsp492A92delGCT---11B.1.177.160.000664
ORF1ab/nsp492A92delGCT---11B.1.177.190.001431
ORF1ab/nsp492A92delGCT---11B.1.177.550.002331
ORF1ab/nsp492A92delGCT---11B.1.177.570.000281
ORF1ab/nsp492A92del1gCtg-t11B.1.177.60.000977
ORF1ab/nsp492A92delGCT---11B.1.177.620.001192
ORF1ab/nsp492A92delGCT---11B.1.177.630.002703
ORF1ab/nsp492A92DgCtgAt11B.1.177.650.000665
ORF1ab/nsp492A92delGCT---11B.1.177.690.001484
ORF1ab/nsp492A92PGctCct11B.1.20.000009
ORF1ab/nsp492A92delGCT---11B.1.221.10.002907
ORF1ab/nsp492A92delGCT---11B.1.258.110.000396
ORF1ab/nsp492A92VgCtgTt11B.1.258.170.000104
ORF1ab/nsp492A92AgcTgcC11B.1.258.170.000104
ORF1ab/nsp492A92AgcTgcA11B.1.3240.001605
ORF1ab/nsp492A92AgcTgcC11B.1.360.000146
ORF1ab/nsp492A92del1gCtg-t11B.1.36.10.00114
ORF1ab/nsp492A92delGCT---11B.1.36.170.000494
ORF1ab/nsp492A92VgCtgTt11B.1.36.290.000517
ORF1ab/nsp492A92LGCtCTt11B.1.36.80.001
ORF1ab/nsp492A92AgcTgcA11B.1.3890.001002
ORF1ab/nsp492A92AgcTgcC11B.1.390.003906
ORF1ab/nsp492A92VgCtgTt11B.1.4530.003236
ORF1ab/nsp492A92AgcTgcA11B.1.5090.000866
ORF1ab/nsp492A92TGctAct11B.1.5260.000024
ORF1ab/nsp492A92SGctTct11B.1.5540.004405
ORF1ab/nsp492A92AgcTgcC11B.1.5750.000303
ORF1ab/nsp492A92VgCtgTt11B.1.5810.009434
ORF1ab/nsp492A92PGctCct11B.1.5950.000261
ORF1ab/nsp492A92AgcTgcC11B.1.5960.000087
ORF1ab/nsp492A92delGCT---11B.1.5960.000087
ORF1ab/nsp492A92AgcTgcA11B.1.617.10.000129
ORF1ab/nsp492A92delGCT---11B.1.617.10.000129
ORF1ab/nsp492A92SGctTct11B.1.617.20.000004
ORF1ab/nsp492A92VgCtgTt11B.1.617.30.002985
ORF1ab/nsp492A92VgCtgTt11B.1.6210.000089
ORF1ab/nsp492A92TGctAct11B.1.6280.000352
ORF1ab/nsp492A92AgcTgcA11B.1.6370.000073
ORF1ab/nsp492A92DgCtgAt11B.1.6370.000073
ORF1ab/nsp492A92VgCtgTt11B.100.008264
ORF1ab/nsp492A92AgcTgcC11B.450.003831
ORF1ab/nsp492A92AgcTgcC11B.6.60.000889
ORF1ab/nsp492A92GgCtgGt11B.6.60.000889
ORF1ab/nsp492A92TGctAct11B.610.005747
ORF1ab/nsp492A92AgcTgcC11C.1.20.004255
ORF1ab/nsp492A92AgcTgcC11C.160.00106
ORF1ab/nsp492A92TGcTAcA11C.350.000774
ORF1ab/nsp492A92VgCtgTt11C.370.000116
ORF1ab/nsp492A92delGCT---11P.10.000016
ORF1ab/nsp492A92AgcTgcC11P.1.120.000484
ORF1ab/nsp492A92VgCtgTt11P.1.120.000484
ORF1ab/nsp492A92AgcTgcA11P.1.140.000048
ORF1ab/nsp492A92VgCtgTt11P.1.140.000048
ORF1ab/nsp492A92VgCtgTt11P.1.150.000232
ORF1ab/nsp492A92TGctAct11P.1.150.000232
ORF1ab/nsp492A92VgCtgTt11P.1.170.000162
ORF1ab/nsp492A92TGctAct11P.1.70.000319
ORF1ab/nsp492A92AgcTgcA11P.20.000187
ORF1ab/nsp492A92AgcTgcC11Q.20.000613
ORF1ab/nsp492A92DgCtgAt11Q.70.001111
ORF1ab/nsp492A92VgCtgTt11Q.80.000165
ORF1ab/nsp492A92del1gCtg-t11R.10.00009
ORF1ab/nsp492A92TGctAct11R.10.00009
ORF1ab/nsp492A92DgCtgAt11R.10.00009
ORF1ab/nsp492A92delGCT---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.