CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 78 & Codon = cAt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp478R78HR2841HnonsyncGtcAt26226218786-8788

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp478R78HcGtcAt262262All0.00005
ORF1ab/nsp478R78HcGtcAt4747AY.40.000073
ORF1ab/nsp478R78HcGtcAt2525B.1.617.20.000094
ORF1ab/nsp478R78HcGtcAt2121AY.30.000209
ORF1ab/nsp478R78HcGtcAt2020AY.440.000122
ORF1ab/nsp478R78HcGtcAt1818B.1.1.70.000016
ORF1ab/nsp478R78HcGtcAt1515AY.250.00009
ORF1ab/nsp478R78HcGtcAt1010AY.430.000044
ORF1ab/nsp478R78HcGtcAt1010C.160.010604
ORF1ab/nsp478R78HcGtcAt99AY.390.000222
ORF1ab/nsp478R78HcGtcAt99AY.470.00028
ORF1ab/nsp478R78HcGtcAt77AY.1000.000322
ORF1ab/nsp478R78HcGtcAt77AY.1030.000043
ORF1ab/nsp478R78HcGtcAt66AY.850.002563
ORF1ab/nsp478R78HcGtcAt55AY.75.10.000902
ORF1ab/nsp478R78HcGtcAt55B.1.1600.000156
ORF1ab/nsp478R78HcGtcAt44AY.1190.000141
ORF1ab/nsp478R78HcGtcAt33AY.1210.000406
ORF1ab/nsp478R78HcGtcAt33B.1.20.000026
ORF1ab/nsp478R78HcGtcAt220.111111
ORF1ab/nsp478R78HcGtcAt22AY.1170.000169
ORF1ab/nsp478R78HcGtcAt22AY.210.003795
ORF1ab/nsp478R78HcGtcAt22AY.4.20.000043
ORF1ab/nsp478R78HcGtcAt22AY.46.60.000144
ORF1ab/nsp478R78HcGtcAt22AY.99.20.000184
ORF1ab/nsp478R78HcGtcAt22B.1.360.000292
ORF1ab/nsp478R78HcGtcAt11AY.1100.000113
ORF1ab/nsp478R78HcGtcAt11AY.1110.000183
ORF1ab/nsp478R78HcGtcAt11AY.1130.000142
ORF1ab/nsp478R78HcGtcAt11AY.1160.000287
ORF1ab/nsp478R78HcGtcAt11AY.1180.000063
ORF1ab/nsp478R78HcGtcAt11AY.200.000039
ORF1ab/nsp478R78HcGtcAt11AY.290.000016
ORF1ab/nsp478R78HcGtcAt11AY.3.10.000085
ORF1ab/nsp478R78HcGtcAt11AY.340.000097
ORF1ab/nsp478R78HcGtcAt11AY.450.000122
ORF1ab/nsp478R78HcGtcAt11AY.50.000021
ORF1ab/nsp478R78HcGtcAt11AY.540.000095
ORF1ab/nsp478R78HcGtcAt11AY.60.000041
ORF1ab/nsp478R78HcGtcAt11AY.620.000436
ORF1ab/nsp478R78HcGtcAt11AY.9.10.000084
ORF1ab/nsp478R78HcGtcAt11AY.98.10.000048
ORF1ab/nsp478R78HcGtcAt11B.1.1.2140.000055
ORF1ab/nsp478R78HcGtcAt11B.1.177.190.001431
ORF1ab/nsp478R78HcGtcAt11B.1.177.440.000519
ORF1ab/nsp478R78HcGtcAt11B.1.2430.00007
ORF1ab/nsp478R78HcGtcAt11B.1.4270.00005
ORF1ab/nsp478R78HcGtcAt11D.20.000075
ORF1ab/nsp478R78HcGtcAt11P.1.10.000318
ORF1ab/nsp478R78HcGtcAt11P.30.001595