CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 78

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp478R78RR2841RsyncgTcgC4884400.9016398786-8788
ORF1ab/nsp478R78RR2841RsyncgTcgA488250.05122958786-8788
ORF1ab/nsp478R78RR2841RsyncgTcgG488220.0450828786-8788
ORF1ab/nsp478R78RR2841RsynCgTAgG48810.002049188786-8788
ORF1ab/nsp478R78HR2841HnonsyncGtcAt26226218786-8788
ORF1ab/nsp478R78CR2841CnonsynCgtTgt12112118786-8788
ORF1ab/nsp478R78delR2841deldelCGT---777718786-8788
ORF1ab/nsp478R78LR2841LnonsyncGtcTt323218786-8788
ORF1ab/nsp478R78SR2841SnonsynCgtAgt26240.9230778786-8788
ORF1ab/nsp478R78SR2841SnonsynCgTAgC2610.03846158786-8788
ORF1ab/nsp478R78SR2841SnonsynCGTTCA2610.03846158786-8788
ORF1ab/nsp478R78del1R2841del1delcGtc-t630.58786-8788
ORF1ab/nsp478R78del1R2841del1delCgt-gt620.3333338786-8788
ORF1ab/nsp478R78del1R2841del1delcgTcg-610.1666678786-8788
ORF1ab/nsp478R78PR2841PnonsyncGTcCG420.58786-8788
ORF1ab/nsp478R78PR2841PnonsyncGtcCt420.58786-8788
ORF1ab/nsp478R78GR2841GnonsynCgtGgt3318786-8788
ORF1ab/nsp478R78TR2841TnonsynCGtACt210.58786-8788
ORF1ab/nsp478R78TR2841TnonsynCGTACG210.58786-8788
ORF1ab/nsp478R78FR2841FnonsynCGtTTt1118786-8788
ORF1ab/nsp478R78QR2841QnonsyncGTcAG1118786-8788
ORF1ab/nsp478R78del2R2841del2delCGt--t1118786-8788

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp478R78RcgTcgC440488All0.000084
ORF1ab/nsp478R78RcgTcgA25488All0.000005
ORF1ab/nsp478R78RcgTcgG22488All0.000004
ORF1ab/nsp478R78RCgTAgG1488All0
ORF1ab/nsp478R78HcGtcAt262262All0.00005
ORF1ab/nsp478R78RcgTcgC244244B.1.390.953125
ORF1ab/nsp478R78CCgtTgt121121All0.000023
ORF1ab/nsp478R78delCGT---7777All0.000015
ORF1ab/nsp478R78HcGtcAt4747AY.40.000073
ORF1ab/nsp478R78RcgTcgC3434AY.46.60.002455
ORF1ab/nsp478R78RcgTcgC3434B.1.5260.000799
ORF1ab/nsp478R78LcGtcTt3232All0.000006
ORF1ab/nsp478R78SCgtAgt2426All0.000005
ORF1ab/nsp478R78SCGTTCA126All0
ORF1ab/nsp478R78SCgTAgC126All0
ORF1ab/nsp478R78HcGtcAt2525B.1.617.20.000094
ORF1ab/nsp478R78CCgtTgt2222AY.40.000034
ORF1ab/nsp478R78HcGtcAt2121AY.30.000209
ORF1ab/nsp478R78HcGtcAt2020AY.440.000122
ORF1ab/nsp478R78delCGT---1919B.1.1.70.000017
ORF1ab/nsp478R78HcGtcAt1818B.1.1.70.000016
ORF1ab/nsp478R78RcgTcgC1218B.1.1.70.000011
ORF1ab/nsp478R78RcgTcgG518B.1.1.70.000004
ORF1ab/nsp478R78RcgTcgA118B.1.1.70.000001
ORF1ab/nsp478R78CCgtTgt1818B.1.617.20.000068
ORF1ab/nsp478R78HcGtcAt1515AY.250.00009
ORF1ab/nsp478R78RcgTcgC1314AY.40.00002
ORF1ab/nsp478R78RcgTcgA114AY.40.000002
ORF1ab/nsp478R78RcgTcgC1314B.1.617.20.000049
ORF1ab/nsp478R78RcgTcgA114B.1.617.20.000004
ORF1ab/nsp478R78RcgTcgC1313AY.250.000078
ORF1ab/nsp478R78RcgTcgA1212AY.60.000494
ORF1ab/nsp478R78RcgTcgC1011AY.440.000061
ORF1ab/nsp478R78RcgTcgA111AY.440.000006
ORF1ab/nsp478R78RcgTcgC1111B.10.000101
ORF1ab/nsp478R78HcGtcAt1010AY.430.000044
ORF1ab/nsp478R78HcGtcAt1010C.160.010604
ORF1ab/nsp478R78SCgtAgt89AY.250.000048
ORF1ab/nsp478R78SCGTTCA19AY.250.000006
ORF1ab/nsp478R78HcGtcAt99AY.390.000222
ORF1ab/nsp478R78HcGtcAt99AY.470.00028
ORF1ab/nsp478R78RcgTcgG78AY.30.00007
ORF1ab/nsp478R78RcgTcgC18AY.30.00001
ORF1ab/nsp478R78delCGT---88AY.430.000035
ORF1ab/nsp478R78CCgtTgt88B.1.1.70.000007
ORF1ab/nsp478R78HcGtcAt77AY.1000.000322
ORF1ab/nsp478R78HcGtcAt77AY.1030.000043
ORF1ab/nsp478R78del1cGtc-t36All0.000001
ORF1ab/nsp478R78del1Cgt-gt26All0
ORF1ab/nsp478R78del1cgTcg-16All0
ORF1ab/nsp478R78RcgTcgC66AY.200.000233
ORF1ab/nsp478R78delCGT---66AY.40.000009
ORF1ab/nsp478R78CCgtTgt66AY.46.60.000433
ORF1ab/nsp478R78HcGtcAt66AY.850.002563
ORF1ab/nsp478R78RcgTcgC25AY.430.000009
ORF1ab/nsp478R78RcgTcgA15AY.430.000004
ORF1ab/nsp478R78RCgTAgG15AY.430.000004
ORF1ab/nsp478R78RcgTcgG15AY.430.000004
ORF1ab/nsp478R78CCgtTgt55AY.440.00003
ORF1ab/nsp478R78HcGtcAt55AY.75.10.000902
ORF1ab/nsp478R78RcgTcgC55B.1.1.3110.001791
ORF1ab/nsp478R78HcGtcAt55B.1.1600.000156
ORF1ab/nsp478R78LcGtcTt55D.20.000375
ORF1ab/nsp478R78PcGtcCt24All0
ORF1ab/nsp478R78PcGTcCG24All0
ORF1ab/nsp478R78LcGtcTt44AY.1030.000025
ORF1ab/nsp478R78CCgtTgt44AY.1190.000141
ORF1ab/nsp478R78HcGtcAt44AY.1190.000141
ORF1ab/nsp478R78SCgtAgt44AY.40.000006
ORF1ab/nsp478R78delCGT---44B.10.000037
ORF1ab/nsp478R78delCGT---44B.1.1770.000053
ORF1ab/nsp478R78RcgTcgC44B.1.5640.001704
ORF1ab/nsp478R78GCgtGgt33All0.000001
ORF1ab/nsp478R78CCgtTgt33AY.1030.000019
ORF1ab/nsp478R78HcGtcAt33AY.1210.000406
ORF1ab/nsp478R78LcGtcTt33AY.250.000018
ORF1ab/nsp478R78LcGtcTt33AY.4.20.000065
ORF1ab/nsp478R78RcgTcgC33AY.420.000121
ORF1ab/nsp478R78CCgtTgt33AY.46.40.000494
ORF1ab/nsp478R78RcgTcgA23AY.690.000373
ORF1ab/nsp478R78RcgTcgC13AY.690.000187
ORF1ab/nsp478R78RcgTcgC33AY.880.002653
ORF1ab/nsp478R78RcgTcgC33AY.920.000862
ORF1ab/nsp478R78CCgtTgt33AY.980.000237
ORF1ab/nsp478R78CCgtTgt33B.10.000027
ORF1ab/nsp478R78RcgTcgC23B.1.1770.000026
ORF1ab/nsp478R78RcgTcgG13B.1.1770.000013
ORF1ab/nsp478R78delCGT---33B.1.20.000026
ORF1ab/nsp478R78HcGtcAt33B.1.20.000026
ORF1ab/nsp478R78delCGT---220.111111
ORF1ab/nsp478R78SCgtAgt220.111111
ORF1ab/nsp478R78HcGtcAt220.111111
ORF1ab/nsp478R78delCGT---22A.20.001324
ORF1ab/nsp478R78TCGtACt12All0
ORF1ab/nsp478R78TCGTACG12All0
ORF1ab/nsp478R78CCgtTgt22AY.1000.000092
ORF1ab/nsp478R78CCgtTgt22AY.1020.000053
ORF1ab/nsp478R78CCgtTgt22AY.1140.000462
ORF1ab/nsp478R78HcGtcAt22AY.1170.000169
ORF1ab/nsp478R78HcGtcAt22AY.210.003795
ORF1ab/nsp478R78CCgtTgt22AY.250.000012
ORF1ab/nsp478R78del1Cgt-gt22AY.250.000012
ORF1ab/nsp478R78LcGtcTt22AY.30.00002
ORF1ab/nsp478R78HcGtcAt22AY.4.20.000043
ORF1ab/nsp478R78delCGT---22AY.4.50.000215
ORF1ab/nsp478R78CCgtTgt22AY.430.000009
ORF1ab/nsp478R78LcGtcTt22AY.430.000009
ORF1ab/nsp478R78PcGTcCG12AY.430.000004
ORF1ab/nsp478R78PcGtcCt12AY.430.000004
ORF1ab/nsp478R78TCGtACt12AY.430.000004
ORF1ab/nsp478R78TCGTACG12AY.430.000004
ORF1ab/nsp478R78HcGtcAt22AY.46.60.000144
ORF1ab/nsp478R78CCgtTgt22AY.470.000062
ORF1ab/nsp478R78CCgtTgt22AY.5.20.004926
ORF1ab/nsp478R78HcGtcAt22AY.99.20.000184
ORF1ab/nsp478R78LcGtcTt22B.1.10.000036
ORF1ab/nsp478R78CCgtTgt22B.1.10.000036
ORF1ab/nsp478R78RcgTcgC22B.1.1.250.001137
ORF1ab/nsp478R78SCgtAgt22B.1.1.5190.000079
ORF1ab/nsp478R78RcgTcgG22B.1.1110.00235
ORF1ab/nsp478R78RcgTcgC22B.1.177.500.00939
ORF1ab/nsp478R78RcgTcgC22B.1.20.000018
ORF1ab/nsp478R78CCgtTgt22B.1.20.000018
ORF1ab/nsp478R78LcGtcTt22B.1.20.000018
ORF1ab/nsp478R78HcGtcAt22B.1.360.000292
ORF1ab/nsp478R78CCgtTgt22B.1.617.10.000258
ORF1ab/nsp478R78LcGtcTt22B.1.617.20.000008
ORF1ab/nsp478R78RcgTcgC22C.360.001821
ORF1ab/nsp478R78RcgTcgA12P.10.000016
ORF1ab/nsp478R78RcgTcgC12P.10.000016
ORF1ab/nsp478R78delCGT---22U.30.007722
ORF1ab/nsp478R78GCgtGgt110.055556
ORF1ab/nsp478R78RcgTcgG11A.20.000662
ORF1ab/nsp478R78FCGtTTt11All0
ORF1ab/nsp478R78QcGTcAG11All0
ORF1ab/nsp478R78del2CGt--t11All0
ORF1ab/nsp478R78RcgTcgC11AY.1020.000027
ORF1ab/nsp478R78SCgtAgt11AY.1030.000006
ORF1ab/nsp478R78HcGtcAt11AY.1100.000113
ORF1ab/nsp478R78delCGT---11AY.1110.000183
ORF1ab/nsp478R78CCgtTgt11AY.1110.000183
ORF1ab/nsp478R78HcGtcAt11AY.1110.000183
ORF1ab/nsp478R78HcGtcAt11AY.1130.000142
ORF1ab/nsp478R78HcGtcAt11AY.1160.000287
ORF1ab/nsp478R78HcGtcAt11AY.1180.000063
ORF1ab/nsp478R78RcgTcgC11AY.1180.000063
ORF1ab/nsp478R78CCgtTgt11AY.1200.000037
ORF1ab/nsp478R78RcgTcgC11AY.190.00114
ORF1ab/nsp478R78LcGtcTt11AY.200.000039
ORF1ab/nsp478R78HcGtcAt11AY.200.000039
ORF1ab/nsp478R78SCgtAgt11AY.230.00007
ORF1ab/nsp478R78CCgtTgt11AY.230.00007
ORF1ab/nsp478R78RcgTcgG11AY.230.00007
ORF1ab/nsp478R78CCgtTgt11AY.23.10.000417
ORF1ab/nsp478R78del2CGt--t11AY.250.000006
ORF1ab/nsp478R78FCGtTTt11AY.250.000006
ORF1ab/nsp478R78delCGT---11AY.250.000006
ORF1ab/nsp478R78CCgtTgt11AY.290.000016
ORF1ab/nsp478R78HcGtcAt11AY.290.000016
ORF1ab/nsp478R78SCgtAgt11AY.30.00001
ORF1ab/nsp478R78HcGtcAt11AY.3.10.000085
ORF1ab/nsp478R78RcgTcgA11AY.330.000067
ORF1ab/nsp478R78CCgtTgt11AY.340.000097
ORF1ab/nsp478R78HcGtcAt11AY.340.000097
ORF1ab/nsp478R78CCgtTgt11AY.350.000233
ORF1ab/nsp478R78CCgtTgt11AY.360.000148
ORF1ab/nsp478R78SCgtAgt11AY.390.000025
ORF1ab/nsp478R78RcgTcgC11AY.390.000025
ORF1ab/nsp478R78QcGTcAG11AY.40.000002
ORF1ab/nsp478R78del1cgTcg-11AY.40.000002
ORF1ab/nsp478R78CCgtTgt11AY.4.20.000022
ORF1ab/nsp478R78RcgTcgC11AY.4.2.10.000149
ORF1ab/nsp478R78SCgtAgt11AY.430.000004
ORF1ab/nsp478R78HcGtcAt11AY.450.000122
ORF1ab/nsp478R78RcgTcgC11AY.450.000122
ORF1ab/nsp478R78CCgtTgt11AY.450.000122
ORF1ab/nsp478R78LcGtcTt11AY.450.000122
ORF1ab/nsp478R78SCgtAgt11AY.460.000104
ORF1ab/nsp478R78RcgTcgA11AY.50.000021
ORF1ab/nsp478R78HcGtcAt11AY.50.000021
ORF1ab/nsp478R78CCgtTgt11AY.50.000021
ORF1ab/nsp478R78delCGT---11AY.50.000021
ORF1ab/nsp478R78HcGtcAt11AY.540.000095
ORF1ab/nsp478R78RcgTcgC11AY.540.000095
ORF1ab/nsp478R78delCGT---11AY.590.00053
ORF1ab/nsp478R78HcGtcAt11AY.60.000041
ORF1ab/nsp478R78RcgTcgC11AY.610.000105
ORF1ab/nsp478R78delCGT---11AY.620.000436
ORF1ab/nsp478R78HcGtcAt11AY.620.000436
ORF1ab/nsp478R78CCgtTgt11AY.750.000056
ORF1ab/nsp478R78RcgTcgA11AY.750.000056
ORF1ab/nsp478R78CCgtTgt11AY.800.001129
ORF1ab/nsp478R78CCgtTgt11AY.810.001992
ORF1ab/nsp478R78HcGtcAt11AY.9.10.000084
ORF1ab/nsp478R78CCgtTgt11AY.98.10.000048
ORF1ab/nsp478R78HcGtcAt11AY.98.10.000048
ORF1ab/nsp478R78delCGT---11AY.990.001049
ORF1ab/nsp478R78LcGtcTt11B.10.000009
ORF1ab/nsp478R78SCgTAgC11B.10.000009
ORF1ab/nsp478R78delCGT---11B.1.10.000018
ORF1ab/nsp478R78RcgTcgG11B.1.10.000018
ORF1ab/nsp478R78CCgtTgt11B.1.1.10.000327
ORF1ab/nsp478R78HcGtcAt11B.1.1.2140.000055
ORF1ab/nsp478R78delCGT---11B.1.1.3060.000438
ORF1ab/nsp478R78RcgTcgC11B.1.1.3070.002532
ORF1ab/nsp478R78delCGT---11B.1.1.3150.008475
ORF1ab/nsp478R78delCGT---11B.1.1.3160.000925
ORF1ab/nsp478R78del1cGtc-t11B.1.1.3620.005618
ORF1ab/nsp478R78delCGT---11B.1.1.4090.002833
ORF1ab/nsp478R78RcgTcgA11B.1.1.5190.00004
ORF1ab/nsp478R78delCGT---11B.1.1.5190.00004
ORF1ab/nsp478R78GCgtGgt11B.1.1.70.000001
ORF1ab/nsp478R78SCgtAgt11B.1.1.70.000001
ORF1ab/nsp478R78delCGT---11B.1.1.700.000341
ORF1ab/nsp478R78RcgTcgG11B.1.110.30.000718
ORF1ab/nsp478R78delCGT---11B.1.1400.018868
ORF1ab/nsp478R78GCgtGgt11B.1.1600.000031
ORF1ab/nsp478R78CCgtTgt11B.1.160.200.008929
ORF1ab/nsp478R78delCGT---11B.1.160.230.004831
ORF1ab/nsp478R78CCgtTgt11B.1.1770.000013
ORF1ab/nsp478R78LcGtcTt11B.1.1770.000013
ORF1ab/nsp478R78LcGtcTt11B.1.177.180.00116
ORF1ab/nsp478R78HcGtcAt11B.1.177.190.001431
ORF1ab/nsp478R78HcGtcAt11B.1.177.440.000519
ORF1ab/nsp478R78delCGT---11B.1.177.570.000281
ORF1ab/nsp478R78delCGT---11B.1.177.620.001192
ORF1ab/nsp478R78LcGtcTt11B.1.177.810.000189
ORF1ab/nsp478R78RcgTcgC11B.1.177.820.000477
ORF1ab/nsp478R78del1cGtc-t11B.1.20.000009
ORF1ab/nsp478R78delCGT---11B.1.221.10.002907
ORF1ab/nsp478R78LcGtcTt11B.1.2430.00007
ORF1ab/nsp478R78HcGtcAt11B.1.2430.00007
ORF1ab/nsp478R78CCgtTgt11B.1.258.210.007752
ORF1ab/nsp478R78RcgTcgC11B.1.258.90.005
ORF1ab/nsp478R78PcGtcCt11B.1.3240.001605
ORF1ab/nsp478R78RcgTcgC11B.1.360.000146
ORF1ab/nsp478R78delCGT---11B.1.36.170.000494
ORF1ab/nsp478R78CCgtTgt11B.1.36.180.00042
ORF1ab/nsp478R78RcgTcgC11B.1.36.80.001
ORF1ab/nsp478R78CCgtTgt11B.1.3670.000792
ORF1ab/nsp478R78RcgTcgC11B.1.3960.000706
ORF1ab/nsp478R78RcgTcgC11B.1.4000.000429
ORF1ab/nsp478R78HcGtcAt11B.1.4270.00005
ORF1ab/nsp478R78CCgtTgt11B.1.4290.000024
ORF1ab/nsp478R78PcGTcCG11B.1.5150.014493
ORF1ab/nsp478R78delCGT---11B.1.5960.000087
ORF1ab/nsp478R78del1cGtc-t11B.1.5960.000087
ORF1ab/nsp478R78RcgTcgC11B.1.6090.000479
ORF1ab/nsp478R78delCGT---11B.1.617.10.000129
ORF1ab/nsp478R78SCgtAgt11B.1.617.20.000004
ORF1ab/nsp478R78delCGT---11B.1.617.20.000004
ORF1ab/nsp478R78CCgtTgt11B.1.6370.000073
ORF1ab/nsp478R78RcgTcgC11B.1.6370.000073
ORF1ab/nsp478R78RcgTcgG11B.1.690.035714
ORF1ab/nsp478R78RcgTcgG11B.1.910.002075
ORF1ab/nsp478R78CCgtTgt11B.580.010204
ORF1ab/nsp478R78delCGT---11C.350.000774
ORF1ab/nsp478R78RcgTcgA11D.20.000075
ORF1ab/nsp478R78HcGtcAt11D.20.000075
ORF1ab/nsp478R78CCgtTgt11D.30.005917
ORF1ab/nsp478R78delCGT---11P.10.000016
ORF1ab/nsp478R78HcGtcAt11P.1.10.000318
ORF1ab/nsp478R78HcGtcAt11P.30.001595
ORF1ab/nsp478R78delCGT---11Q.20.000613
ORF1ab/nsp478R78CCgtTgt11W.40.001351