CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 73

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp473T73IT2836InonsynaCaaTa6251625118771-8773
ORF1ab/nsp473T73TT2836TsynacAacG8287480.9033828771-8773
ORF1ab/nsp473T73TT2836TsynacAacT828600.07246388771-8773
ORF1ab/nsp473T73TT2836TsynacAacC828200.02415468771-8773
ORF1ab/nsp473T73AT2836AnonsynAcaGca14814818771-8773
ORF1ab/nsp473T73delT2836deldelACA---10010018771-8773
ORF1ab/nsp473T73KT2836KnonsynaCaaAa171718771-8773
ORF1ab/nsp473T73ST2836SnonsynAcaTca12110.9166678771-8773
ORF1ab/nsp473T73ST2836SnonsynAcATcC1210.08333338771-8773
ORF1ab/nsp473T73PT2836PnonsynAcaCca111118771-8773
ORF1ab/nsp473T73RT2836RnonsynaCaaGa111118771-8773
ORF1ab/nsp473T73del1T2836del1delacAac-2218771-8773
ORF1ab/nsp473T73VT2836VnonsynACaGTa2218771-8773
ORF1ab/nsp473T73YT2836YnonsynACATAC1118771-8773
ORF1ab/nsp473T73XT2836XnonsynACaTAa1118771-8773
ORF1ab/nsp473T73NT2836NnonsynaCAaAC1118771-8773
ORF1ab/nsp473T73del2T2836del2delaCAa--1118771-8773
ORF1ab/nsp473T73MT2836MnonsynaCAaTG1118771-8773

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp473T73IaCaaTa62516251All0.001196
ORF1ab/nsp473T73IaCaaTa914914AY.390.022586
ORF1ab/nsp473T73TacAacG748828All0.000143
ORF1ab/nsp473T73TacAacT60828All0.000011
ORF1ab/nsp473T73TacAacC20828All0.000004
ORF1ab/nsp473T73IaCaaTa769769B.1.617.20.002896
ORF1ab/nsp473T73IaCaaTa685685AY.430.003035
ORF1ab/nsp473T73IaCaaTa540540B.1.1.70.000483
ORF1ab/nsp473T73IaCaaTa495495B.1.20.004359
ORF1ab/nsp473T73IaCaaTa459459B.1.5260.010789
ORF1ab/nsp473T73IaCaaTa432432AY.40.000672
ORF1ab/nsp473T73TacAacG219219B.1.5050.960526
ORF1ab/nsp473T73IaCaaTa205205AY.250.001233
ORF1ab/nsp473T73TacAacG159160B.1.617.20.000599
ORF1ab/nsp473T73TacAacT1160B.1.617.20.000004
ORF1ab/nsp473T73AAcaGca148148All0.000028
ORF1ab/nsp473T73IaCaaTa125125AY.30.001243
ORF1ab/nsp473T73IaCaaTa123123B.10.001127
ORF1ab/nsp473T73IaCaaTa114114B.1.3510.003389
ORF1ab/nsp473T73IaCaaTa104104AY.440.000633
ORF1ab/nsp473T73delACA---100100All0.000019
ORF1ab/nsp473T73IaCaaTa7676P.10.001197
ORF1ab/nsp473T73IaCaaTa6060B.1.1770.00079
ORF1ab/nsp473T73TacAacG5960B.1.20.00052
ORF1ab/nsp473T73TacAacT160B.1.20.000009
ORF1ab/nsp473T73IaCaaTa5656AY.1030.000348
ORF1ab/nsp473T73IaCaaTa5151B.1.2430.003549
ORF1ab/nsp473T73TacAacG4950AY.430.000217
ORF1ab/nsp473T73TacAacT150AY.430.000004
ORF1ab/nsp473T73TacAacG4646AY.690.008587
ORF1ab/nsp473T73IaCaaTa3939AY.1020.001034
ORF1ab/nsp473T73AAcaGca3535AY.1190.001236
ORF1ab/nsp473T73IaCaaTa3535AY.50.000723
ORF1ab/nsp473T73TacAacT3434AY.90.002298
ORF1ab/nsp473T73IaCaaTa3434B.1.177.600.007427
ORF1ab/nsp473T73IaCaaTa3333B.1.2210.002344
ORF1ab/nsp473T73IaCaaTa3232AY.260.000906
ORF1ab/nsp473T73AAcaGca3030AY.1030.000186
ORF1ab/nsp473T73IaCaaTa2929B.1.10.000526
ORF1ab/nsp473T73TacAacG2328B.1.1.70.000021
ORF1ab/nsp473T73TacAacT328B.1.1.70.000003
ORF1ab/nsp473T73TacAacC228B.1.1.70.000002
ORF1ab/nsp473T73IaCaaTa2828B.1.4290.000659
ORF1ab/nsp473T73IaCaaTa2828P.1.150.006506
ORF1ab/nsp473T73delACA---2727B.1.1.70.000024
ORF1ab/nsp473T73IaCaaTa2727B.1.617.10.003482
ORF1ab/nsp473T73IaCaaTa2727P.20.005039
ORF1ab/nsp473T73IaCaaTa2525AY.3.10.002131
ORF1ab/nsp473T73IaCaaTa2525B.1.1.2140.001386
ORF1ab/nsp473T73IaCaaTa2525B.1.1.5190.000993
ORF1ab/nsp473T73IaCaaTa2424B.1.4270.001212
ORF1ab/nsp473T73TacAacG2122B.1.2430.001461
ORF1ab/nsp473T73TacAacT122B.1.2430.00007
ORF1ab/nsp473T73TacAacG2021AY.40.000031
ORF1ab/nsp473T73TacAacT121AY.40.000002
ORF1ab/nsp473T73TacAacG1919AY.30.000189
ORF1ab/nsp473T73IaCaaTa1919AY.950.01446
ORF1ab/nsp473T73KaCaaAa1717All0.000003
ORF1ab/nsp473T73TacAacG1717AY.9.20.000624
ORF1ab/nsp473T73IaCaaTa1616AY.290.000252
ORF1ab/nsp473T73TacAacG1516AY.440.000091
ORF1ab/nsp473T73TacAacT116AY.440.000006
ORF1ab/nsp473T73IaCaaTa1616B.1.1.3950.888889
ORF1ab/nsp473T73IaCaaTa1616R.10.00144
ORF1ab/nsp473T73AAcaGca1515B.1.1.70.000013
ORF1ab/nsp473T73IaCaaTa1515Q.10.001895
ORF1ab/nsp473T73IaCaaTa1414B.1.3690.003993
ORF1ab/nsp473T73IaCaaTa1313AY.1190.000459
ORF1ab/nsp473T73TacAacG1313AY.250.000078
ORF1ab/nsp473T73IaCaaTa1313AY.470.000404
ORF1ab/nsp473T73TacAacG913B.10.000082
ORF1ab/nsp473T73TacAacC313B.10.000027
ORF1ab/nsp473T73TacAacT113B.10.000009
ORF1ab/nsp473T73SAcaTca1112All0.000002
ORF1ab/nsp473T73SAcATcC112All0
ORF1ab/nsp473T73IaCaaTa1212AY.330.000801
ORF1ab/nsp473T73IaCaaTa1212B.1.177.690.017804
ORF1ab/nsp473T73IaCaaTa1212B.1.177.810.002272
ORF1ab/nsp473T73AAcaGca1212B.1.3750.009836
ORF1ab/nsp473T73RaCaaGa1111All0.000002
ORF1ab/nsp473T73PAcaCca1111All0.000002
ORF1ab/nsp473T73IaCaaTa1111AY.1130.001566
ORF1ab/nsp473T73IaCaaTa1111AY.420.000443
ORF1ab/nsp473T73IaCaaTa1111B.1.1.2220.002244
ORF1ab/nsp473T73IaCaaTa1111B.1.1.2770.008346
ORF1ab/nsp473T73IaCaaTa1010AY.1200.000372
ORF1ab/nsp473T73IaCaaTa1010AY.4.20.000217
ORF1ab/nsp473T73IaCaaTa1010AY.940.004427
ORF1ab/nsp473T73IaCaaTa99AY.60.00037
ORF1ab/nsp473T73IaCaaTa99AY.610.000943
ORF1ab/nsp473T73IaCaaTa99B.1.2340.001187
ORF1ab/nsp473T73IaCaaTa99B.1.5870.017078
ORF1ab/nsp473T73IaCaaTa99P.1.70.002874
ORF1ab/nsp473T73delACA---88AY.430.000035
ORF1ab/nsp473T73IaCaaTa88AY.980.000632
ORF1ab/nsp473T73delACA---88B.10.000073
ORF1ab/nsp473T73IaCaaTa88B.1.2400.001725
ORF1ab/nsp473T73IaCaaTa77AY.1180.000439
ORF1ab/nsp473T73TacAacG77AY.390.000173
ORF1ab/nsp473T73delACA---77AY.40.000011
ORF1ab/nsp473T73AAcaGca77AY.430.000031
ORF1ab/nsp473T73IaCaaTa77B.1.177.800.013384
ORF1ab/nsp473T73TacAacG77B.1.2580.000466
ORF1ab/nsp473T73IaCaaTa77B.1.5960.00061
ORF1ab/nsp473T73TacAacC67P.1.140.000287
ORF1ab/nsp473T73TacAacT17P.1.140.000048
ORF1ab/nsp473T73PAcaCca66AY.250.000036
ORF1ab/nsp473T73IaCaaTa66AY.360.000889
ORF1ab/nsp473T73IaCaaTa66AY.39.10.000238
ORF1ab/nsp473T73AAcaGca66AY.40.000009
ORF1ab/nsp473T73IaCaaTa66AY.99.20.000553
ORF1ab/nsp473T73IaCaaTa66B.1.177.160.003987
ORF1ab/nsp473T73IaCaaTa66B.1.2580.000399
ORF1ab/nsp473T73TacAacG56B.1.438.10.000536
ORF1ab/nsp473T73TacAacC16B.1.438.10.000107
ORF1ab/nsp473T73IaCaaTa66B.1.4970.001889
ORF1ab/nsp473T73IaCaaTa55AY.1000.00023
ORF1ab/nsp473T73IaCaaTa55AY.230.000349
ORF1ab/nsp473T73IaCaaTa55AY.270.000324
ORF1ab/nsp473T73IaCaaTa55B.1.5750.001517
ORF1ab/nsp473T73IaCaaTa55B.1.5950.001305
ORF1ab/nsp473T73TacAacG35P.10.000047
ORF1ab/nsp473T73TacAacT25P.10.000032
ORF1ab/nsp473T73IaCaaTa55P.1.100.001347
ORF1ab/nsp473T73TacAacG34AY.1020.00008
ORF1ab/nsp473T73TacAacC14AY.1020.000027
ORF1ab/nsp473T73IaCaaTa44AY.1170.000338
ORF1ab/nsp473T73TacAacG34AY.260.000085
ORF1ab/nsp473T73TacAacC14AY.260.000028
ORF1ab/nsp473T73RaCaaGa44AY.40.000006
ORF1ab/nsp473T73TacAacG44AY.450.000487
ORF1ab/nsp473T73IaCaaTa44AY.75.10.000721
ORF1ab/nsp473T73KaCaaAa44B.10.000037
ORF1ab/nsp473T73TacAacG34B.1.10.000054
ORF1ab/nsp473T73TacAacT14B.1.10.000018
ORF1ab/nsp473T73IaCaaTa44B.1.1.1700.004988
ORF1ab/nsp473T73TacAacG44B.1.1770.000053
ORF1ab/nsp473T73IaCaaTa44B.1.177.520.00703
ORF1ab/nsp473T73PAcaCca44B.1.177.720.013559
ORF1ab/nsp473T73IaCaaTa44B.1.177.790.009368
ORF1ab/nsp473T73IaCaaTa44B.1.360.000584
ORF1ab/nsp473T73IaCaaTa44B.1.4200.041667
ORF1ab/nsp473T73IaCaaTa44B.1.596.10.037383
ORF1ab/nsp473T73IaCaaTa44B.1.621.10.002023
ORF1ab/nsp473T73IaCaaTa44P.1.140.000191
ORF1ab/nsp473T73TacAacC330.166667
ORF1ab/nsp473T73IaCaaTa33AS.10.028571
ORF1ab/nsp473T73TacAacG33AY.1030.000019
ORF1ab/nsp473T73IaCaaTa33AY.1160.00086
ORF1ab/nsp473T73TacAacG33AY.1180.000188
ORF1ab/nsp473T73AAcaGca33AY.23.10.001252
ORF1ab/nsp473T73IaCaaTa33AY.240.001293
ORF1ab/nsp473T73TacAacG33AY.330.0002
ORF1ab/nsp473T73TacAacG33AY.39.10.000119
ORF1ab/nsp473T73delACA---33AY.4.50.000322
ORF1ab/nsp473T73IaCaaTa33AY.46.60.000217
ORF1ab/nsp473T73IaCaaTa33AY.9.10.000251
ORF1ab/nsp473T73IaCaaTa33AY.98.10.000145
ORF1ab/nsp473T73IaCaaTa33B.1.1.280.000934
ORF1ab/nsp473T73IaCaaTa33B.1.1.3110.001074
ORF1ab/nsp473T73IaCaaTa33B.1.1.3160.002775
ORF1ab/nsp473T73IaCaaTa33B.1.1.370.000579
ORF1ab/nsp473T73IaCaaTa33B.1.1.4340.001046
ORF1ab/nsp473T73AAcaGca33B.1.1.630.001157
ORF1ab/nsp473T73KaCaaAa33B.1.1.70.000003
ORF1ab/nsp473T73delACA---33B.1.1770.00004
ORF1ab/nsp473T73TacAacT33B.1.258.170.000312
ORF1ab/nsp473T73IaCaaTa33B.1.2980.006342
ORF1ab/nsp473T73IaCaaTa33B.1.36.80.003
ORF1ab/nsp473T73IaCaaTa33B.1.4090.002344
ORF1ab/nsp473T73IaCaaTa33B.1.4160.003807
ORF1ab/nsp473T73TacAacG23B.1.4290.000047
ORF1ab/nsp473T73TacAacT13B.1.4290.000024
ORF1ab/nsp473T73IaCaaTa33B.1.438.10.000322
ORF1ab/nsp473T73delACA---33B.1.617.20.000011
ORF1ab/nsp473T73AAcaGca33B.1.617.20.000011
ORF1ab/nsp473T73IaCaaTa33B.1.6210.000266
ORF1ab/nsp473T73IaCaaTa33B.4.50.035714
ORF1ab/nsp473T73IaCaaTa33C.180.007772
ORF1ab/nsp473T73AAcaGca33C.370.000348
ORF1ab/nsp473T73VACaGTa220.111111
ORF1ab/nsp473T73delACA---220.111111
ORF1ab/nsp473T73IaCaaTa220.111111
ORF1ab/nsp473T73AAcaGca220.111111
ORF1ab/nsp473T73SAcaTca120.055556
ORF1ab/nsp473T73SAcATcC120.055556
ORF1ab/nsp473T73AAcaGca22A.2.40.006734
ORF1ab/nsp473T73IaCaaTa22A.2.50.000998
ORF1ab/nsp473T73IaCaaTa22A.270.003311
ORF1ab/nsp473T73IaCaaTa22AD.20.000438
ORF1ab/nsp473T73del1acAac-22All0
ORF1ab/nsp473T73VACaGTa22All0
ORF1ab/nsp473T73AAcaGca22AY.1020.000053
ORF1ab/nsp473T73delACA---22AY.1030.000012
ORF1ab/nsp473T73TacAacG22AY.1100.000225
ORF1ab/nsp473T73IaCaaTa22AY.1110.000366
ORF1ab/nsp473T73IaCaaTa22AY.120.000632
ORF1ab/nsp473T73IaCaaTa22AY.200.000078
ORF1ab/nsp473T73TacAacG22AY.23.10.000835
ORF1ab/nsp473T73AAcaGca22AY.250.000012
ORF1ab/nsp473T73AAcaGca22AY.29.10.000441
ORF1ab/nsp473T73KaCaaAa22AY.40.000003
ORF1ab/nsp473T73IaCaaTa22AY.450.000243
ORF1ab/nsp473T73IaCaaTa22AY.460.000208
ORF1ab/nsp473T73AAcaGca22AY.470.000062
ORF1ab/nsp473T73IaCaaTa22AY.5.30.000675
ORF1ab/nsp473T73IaCaaTa22AY.550.001835
ORF1ab/nsp473T73IaCaaTa22AY.590.001059
ORF1ab/nsp473T73IaCaaTa22AY.670.000929
ORF1ab/nsp473T73IaCaaTa22AY.680.000547
ORF1ab/nsp473T73IaCaaTa22AY.690.000373
ORF1ab/nsp473T73IaCaaTa22AY.740.000231
ORF1ab/nsp473T73IaCaaTa22AY.9.20.000073
ORF1ab/nsp473T73delACA---22AY.990.002099
ORF1ab/nsp473T73RaCaaGa22B.10.000018
ORF1ab/nsp473T73AAcaGca22B.10.000018
ORF1ab/nsp473T73SAcaTca22B.1.10.000036
ORF1ab/nsp473T73IaCaaTa22B.1.1.1410.004024
ORF1ab/nsp473T73IaCaaTa22B.1.1.1960.011429
ORF1ab/nsp473T73IaCaaTa22B.1.1.2160.001781
ORF1ab/nsp473T73IaCaaTa22B.1.1.2840.000215
ORF1ab/nsp473T73delACA---22B.1.1.3060.000877
ORF1ab/nsp473T73SAcaTca22B.1.1.4240.090909
ORF1ab/nsp473T73IaCaaTa22B.1.1600.000062
ORF1ab/nsp473T73IaCaaTa22B.1.160.260.004843
ORF1ab/nsp473T73IaCaaTa22B.1.177.40.000422
ORF1ab/nsp473T73IaCaaTa22B.1.177.70.00033
ORF1ab/nsp473T73TacAacG22B.1.177.810.000379
ORF1ab/nsp473T73AAcaGca22B.1.20.000018
ORF1ab/nsp473T73delACA---22B.1.20.000018
ORF1ab/nsp473T73IaCaaTa22B.1.230.012121
ORF1ab/nsp473T73IaCaaTa22B.1.258.170.000208
ORF1ab/nsp473T73IaCaaTa22B.1.3240.00321
ORF1ab/nsp473T73TacAacT22B.1.351.20.000605
ORF1ab/nsp473T73IaCaaTa22B.1.351.30.001753
ORF1ab/nsp473T73IaCaaTa22B.1.36.270.001527
ORF1ab/nsp473T73IaCaaTa22B.1.4380.013072
ORF1ab/nsp473T73IaCaaTa22B.1.5250.000226
ORF1ab/nsp473T73IaCaaTa22B.1.6090.000959
ORF1ab/nsp473T73delACA---22B.1.6210.000177
ORF1ab/nsp473T73IaCaaTa22B.1.6280.000705
ORF1ab/nsp473T73IaCaaTa22C.350.001548
ORF1ab/nsp473T73IaCaaTa22C.36.30.001134
ORF1ab/nsp473T73TacAacG22P.1.120.000968
ORF1ab/nsp473T73IaCaaTa22P.1.120.000968
ORF1ab/nsp473T73XACaTAa110.055556
ORF1ab/nsp473T73YACATAC110.055556
ORF1ab/nsp473T73KaCaaAa110.055556
ORF1ab/nsp473T73NaCAaAC110.055556
ORF1ab/nsp473T73IaCaaTa11A0.000387
ORF1ab/nsp473T73IaCaaTa11A.2.5.20.001572
ORF1ab/nsp473T73AAcaGca11A.23.10.000704
ORF1ab/nsp473T73YACATAC11All0
ORF1ab/nsp473T73MaCAaTG11All0
ORF1ab/nsp473T73XACaTAa11All0
ORF1ab/nsp473T73NaCAaAC11All0
ORF1ab/nsp473T73del2aCAa--11All0
ORF1ab/nsp473T73IaCaaTa11AY.10.000396
ORF1ab/nsp473T73IaCaaTa11AY.1040.001984
ORF1ab/nsp473T73TacAacG11AY.110.001339
ORF1ab/nsp473T73IaCaaTa11AY.1100.000113
ORF1ab/nsp473T73TacAacG11AY.1160.000287
ORF1ab/nsp473T73TacAacG11AY.1190.000035
ORF1ab/nsp473T73TacAacT11AY.1200.000037
ORF1ab/nsp473T73delACA---11AY.1200.000037
ORF1ab/nsp473T73IaCaaTa11AY.1210.000135
ORF1ab/nsp473T73TacAacG11AY.130.000161
ORF1ab/nsp473T73IaCaaTa11AY.130.000161
ORF1ab/nsp473T73IaCaaTa11AY.160.00038
ORF1ab/nsp473T73IaCaaTa11AY.190.00114
ORF1ab/nsp473T73KaCaaAa11AY.200.000039
ORF1ab/nsp473T73AAcaGca11AY.230.00007
ORF1ab/nsp473T73KaCaaAa11AY.230.00007
ORF1ab/nsp473T73del2aCAa--11AY.250.000006
ORF1ab/nsp473T73delACA---11AY.250.000006
ORF1ab/nsp473T73KaCaaAa11AY.260.000028
ORF1ab/nsp473T73TacAacG11AY.290.000016
ORF1ab/nsp473T73delACA---11AY.290.000016
ORF1ab/nsp473T73AAcaGca11AY.30.00001
ORF1ab/nsp473T73IaCaaTa11AY.370.000316
ORF1ab/nsp473T73delACA---11AY.39.10.00004
ORF1ab/nsp473T73SAcaTca11AY.40.000002
ORF1ab/nsp473T73del1acAac-11AY.40.000002
ORF1ab/nsp473T73delACA---11AY.4.20.000022
ORF1ab/nsp473T73TacAacC11AY.4.20.000022
ORF1ab/nsp473T73IaCaaTa11AY.4.2.10.000149
ORF1ab/nsp473T73IaCaaTa11AY.4.40.000409
ORF1ab/nsp473T73TacAacG11AY.410.000294
ORF1ab/nsp473T73RaCaaGa11AY.450.000122
ORF1ab/nsp473T73IaCaaTa11AY.46.20.000635
ORF1ab/nsp473T73IaCaaTa11AY.46.40.000165
ORF1ab/nsp473T73IaCaaTa11AY.46.50.000198
ORF1ab/nsp473T73delACA---11AY.470.000031
ORF1ab/nsp473T73TacAacC11AY.470.000031
ORF1ab/nsp473T73SAcaTca11AY.50.000021
ORF1ab/nsp473T73delACA---11AY.50.000021
ORF1ab/nsp473T73IaCaaTa11AY.500.000799
ORF1ab/nsp473T73IaCaaTa11AY.530.000288
ORF1ab/nsp473T73IaCaaTa11AY.540.000095
ORF1ab/nsp473T73TacAacT11AY.540.000095
ORF1ab/nsp473T73IaCaaTa11AY.570.000656
ORF1ab/nsp473T73delACA---11AY.590.00053
ORF1ab/nsp473T73TacAacG11AY.60.000041
ORF1ab/nsp473T73AAcaGca11AY.60.000041
ORF1ab/nsp473T73AAcaGca11AY.610.000105
ORF1ab/nsp473T73delACA---11AY.620.000436
ORF1ab/nsp473T73TacAacG11AY.650.000533
ORF1ab/nsp473T73delACA---11AY.670.000464
ORF1ab/nsp473T73delACA---11AY.750.000056
ORF1ab/nsp473T73TacAacT11AY.75.10.00018
ORF1ab/nsp473T73IaCaaTa11AY.80.000606
ORF1ab/nsp473T73IaCaaTa11AY.840.000437
ORF1ab/nsp473T73IaCaaTa11AY.850.000427
ORF1ab/nsp473T73IaCaaTa11AY.920.000287
ORF1ab/nsp473T73TacAacG11AY.98.10.000048
ORF1ab/nsp473T73TacAacG11AY.99.20.000092
ORF1ab/nsp473T73IaCaaTa11B0.000128
ORF1ab/nsp473T73delACA---11B.1.10.000018
ORF1ab/nsp473T73KaCaaAa11B.1.10.000018
ORF1ab/nsp473T73IaCaaTa11B.1.1.10.000327
ORF1ab/nsp473T73IaCaaTa11B.1.1.1210.002427
ORF1ab/nsp473T73AAcaGca11B.1.1.1760.000439
ORF1ab/nsp473T73IaCaaTa11B.1.1.1890.001513
ORF1ab/nsp473T73KaCaaAa11B.1.1.250.000569
ORF1ab/nsp473T73AAcaGca11B.1.1.250.000569
ORF1ab/nsp473T73IaCaaTa11B.1.1.2790.001121
ORF1ab/nsp473T73AAcaGca11B.1.1.2890.002083
ORF1ab/nsp473T73IaCaaTa11B.1.1.2940.001266
ORF1ab/nsp473T73IaCaaTa11B.1.1.3050.003861
ORF1ab/nsp473T73delACA---11B.1.1.3150.008475
ORF1ab/nsp473T73IaCaaTa11B.1.1.3220.008772
ORF1ab/nsp473T73IaCaaTa11B.1.1.330.000421
ORF1ab/nsp473T73TacAacG11B.1.1.3480.000796
ORF1ab/nsp473T73IaCaaTa11B.1.1.3690.000446
ORF1ab/nsp473T73RaCaaGa11B.1.1.370.000193
ORF1ab/nsp473T73IaCaaTa11B.1.1.3720.000689
ORF1ab/nsp473T73IaCaaTa11B.1.1.3970.002252
ORF1ab/nsp473T73IaCaaTa11B.1.1.3980.003226
ORF1ab/nsp473T73delACA---11B.1.1.4090.002833
ORF1ab/nsp473T73IaCaaTa11B.1.1.4850.016667
ORF1ab/nsp473T73IaCaaTa11B.1.1.500.000679
ORF1ab/nsp473T73delACA---11B.1.1.5190.00004
ORF1ab/nsp473T73IaCaaTa11B.1.1.630.000386
ORF1ab/nsp473T73delACA---11B.1.1.700.000341
ORF1ab/nsp473T73IaCaaTa11B.1.1.700.000341
ORF1ab/nsp473T73PAcaCca11B.1.1.700.000341
ORF1ab/nsp473T73SAcaTca11B.1.1.710.006061
ORF1ab/nsp473T73IaCaaTa11B.1.1.830.00271
ORF1ab/nsp473T73IaCaaTa11B.1.1100.004525
ORF1ab/nsp473T73delACA---11B.1.1400.018868
ORF1ab/nsp473T73IaCaaTa11B.1.1470.000756
ORF1ab/nsp473T73TacAacT11B.1.160.100.008065
ORF1ab/nsp473T73IaCaaTa11B.1.160.120.00641
ORF1ab/nsp473T73delACA---11B.1.160.240.004425
ORF1ab/nsp473T73KaCaaAa11B.1.1770.000013
ORF1ab/nsp473T73SAcaTca11B.1.1770.000013
ORF1ab/nsp473T73IaCaaTa11B.1.177.100.000878
ORF1ab/nsp473T73IaCaaTa11B.1.177.170.000821
ORF1ab/nsp473T73delACA---11B.1.177.210.000076
ORF1ab/nsp473T73SAcaTca11B.1.177.210.000076
ORF1ab/nsp473T73delACA---11B.1.177.40.000211
ORF1ab/nsp473T73IaCaaTa11B.1.177.420.000894
ORF1ab/nsp473T73IaCaaTa11B.1.177.570.000281
ORF1ab/nsp473T73delACA---11B.1.177.570.000281
ORF1ab/nsp473T73delACA---11B.1.177.620.001192
ORF1ab/nsp473T73delACA---11B.1.177.70.000165
ORF1ab/nsp473T73IaCaaTa11B.1.177.730.000566
ORF1ab/nsp473T73KaCaaAa11B.1.20.000009
ORF1ab/nsp473T73IaCaaTa11B.1.2060.000816
ORF1ab/nsp473T73IaCaaTa11B.1.2180.005155
ORF1ab/nsp473T73delACA---11B.1.221.10.002907
ORF1ab/nsp473T73IaCaaTa11B.1.221.30.000833
ORF1ab/nsp473T73IaCaaTa11B.1.2320.000537
ORF1ab/nsp473T73TacAacG11B.1.2340.000132
ORF1ab/nsp473T73IaCaaTa11B.1.2350.002519
ORF1ab/nsp473T73IaCaaTa11B.1.2410.000812
ORF1ab/nsp473T73IaCaaTa11B.1.3110.000275
ORF1ab/nsp473T73IaCaaTa11B.1.3360.002439
ORF1ab/nsp473T73TacAacT11B.1.3510.00003
ORF1ab/nsp473T73IaCaaTa11B.1.351.20.000303
ORF1ab/nsp473T73IaCaaTa11B.1.36.10.00114
ORF1ab/nsp473T73IaCaaTa11B.1.36.100.004785
ORF1ab/nsp473T73delACA---11B.1.36.170.000494
ORF1ab/nsp473T73IaCaaTa11B.1.36.180.00042
ORF1ab/nsp473T73IaCaaTa11B.1.36.210.00216
ORF1ab/nsp473T73IaCaaTa11B.1.36.290.000517
ORF1ab/nsp473T73IaCaaTa11B.1.3610.001289
ORF1ab/nsp473T73IaCaaTa11B.1.3830.009009
ORF1ab/nsp473T73IaCaaTa11B.1.4260.001009
ORF1ab/nsp473T73IaCaaTa11B.1.4560.003268
ORF1ab/nsp473T73AAcaGca11B.1.4700.001404
ORF1ab/nsp473T73IaCaaTa11B.1.4700.001404
ORF1ab/nsp473T73TacAacG11B.1.4970.000315
ORF1ab/nsp473T73RaCaaGa11B.1.5150.014493
ORF1ab/nsp473T73TacAacG11B.1.5260.000024
ORF1ab/nsp473T73MaCAaTG11B.1.5260.000024
ORF1ab/nsp473T73RaCaaGa11B.1.5380.008065
ORF1ab/nsp473T73TacAacT11B.1.5510.00129
ORF1ab/nsp473T73IaCaaTa11B.1.5760.000907
ORF1ab/nsp473T73IaCaaTa11B.1.5820.000491
ORF1ab/nsp473T73IaCaaTa11B.1.5890.007576
ORF1ab/nsp473T73AAcaGca11B.1.5950.000261
ORF1ab/nsp473T73delACA---11B.1.5960.000087
ORF1ab/nsp473T73TacAacG11B.1.5960.000087
ORF1ab/nsp473T73delACA---11B.1.617.10.000129
ORF1ab/nsp473T73TacAacG11B.1.617.10.000129
ORF1ab/nsp473T73TacAacG11B.1.617.30.002985
ORF1ab/nsp473T73IaCaaTa11B.1.6180.004032
ORF1ab/nsp473T73AAcaGca11B.1.619.10.000641
ORF1ab/nsp473T73AAcaGca11B.1.80.001972
ORF1ab/nsp473T73TacAacC11B.1.930.000934
ORF1ab/nsp473T73IaCaaTa11B.260.014706
ORF1ab/nsp473T73RaCaaGa11B.30.000831
ORF1ab/nsp473T73IaCaaTa11B.400.000364
ORF1ab/nsp473T73AAcaGca11B.60.00091
ORF1ab/nsp473T73IaCaaTa11B.6.60.000889
ORF1ab/nsp473T73TacAacG11C.350.000774
ORF1ab/nsp473T73IaCaaTa11C.370.000116
ORF1ab/nsp473T73AAcaGca11C.37.10.002618
ORF1ab/nsp473T73IaCaaTa11D.20.000075
ORF1ab/nsp473T73AAcaGca11P.10.000016
ORF1ab/nsp473T73delACA---11P.10.000016
ORF1ab/nsp473T73SAcaTca11P.10.000016
ORF1ab/nsp473T73IaCaaTa11P.1.10.000318
ORF1ab/nsp473T73IaCaaTa11P.1.170.000162
ORF1ab/nsp473T73IaCaaTa11P.30.001595
ORF1ab/nsp473T73IaCaaTa11P.60.003145
ORF1ab/nsp473T73del1acAac-11Q.20.000613
ORF1ab/nsp473T73delACA---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.