CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 498 | V498I | V3261I | nonsyn | Gtt | Att | 1483 | 1483 | 1 | 10046-10048 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1483 | 1483 | All | 0.000284 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 324 | 324 | B.1.1.7 | 0.00029 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 88 | 88 | AY.29 | 0.001388 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 85 | 85 | W.4 | 0.114865 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 76 | 76 | AY.4 | 0.000118 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 74 | 74 | B.1.177 | 0.000974 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 62 | 62 | B.1 | 0.000568 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 53 | 53 | B.1.177.44 | 0.027504 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 49 | 49 | B.1.617.2 | 0.000185 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 46 | 46 | B.1.160 | 0.001435 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 44 | 44 | B.1.2 | 0.000387 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 31 | 31 | B.1.1 | 0.000562 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 27 | 27 | B.1.1.39 | 0.013761 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 22 | 22 | B.1.221 | 0.001563 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 21 | 21 | AY.44 | 0.000128 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 19 | 19 | B.1.258 | 0.001264 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 17 | 17 | B.1.351 | 0.000505 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 15 | 15 | B.1.160.16 | 0.013941 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 13 | 13 | AY.23 | 0.000907 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 12 | 12 | P.1 | 0.000189 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 11 | 11 | W.3 | 0.057895 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 10 | 10 | AY.61 | 0.001048 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 10 | 10 | B.1.1.214 | 0.000555 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 10 | 10 | B.1.351.5 | 0.005995 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 9 | 9 | B.1.1.434 | 0.003137 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 9 | 9 | B.1.177.43 | 0.013294 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 8 | 8 | B.1.1.70 | 0.002729 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 8 | 8 | B.1.36.35 | 0.020833 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 8 | 8 | B.1.526 | 0.000188 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 8 | 8 | B.1.575 | 0.002427 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 7 | 7 | AY.8 | 0.004242 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 7 | 7 | AY.9 | 0.000473 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 7 | 7 | AY.9.2 | 0.000257 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 7 | 7 | B.1.177.4 | 0.001477 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 7 | 7 | B.1.258.17 | 0.000728 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 6 | 6 | B.1.160.14 | 0.012712 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 6 | 6 | B.1.160.26 | 0.014528 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 6 | 6 | B.1.36.1 | 0.006842 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 5 | 5 | AY.16 | 0.001898 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 5 | 5 | B.1.160.20 | 0.044643 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 5 | 5 | B.1.160.29 | 0.021097 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 5 | 5 | B.1.177.53 | 0.011962 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 4 | 4 | B.1.1.307 | 0.010127 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 4 | 4 | B.1.160.11 | 0.022857 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 4 | 4 | B.1.160.12 | 0.025641 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 4 | 4 | B.1.160.30 | 0.011905 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 4 | 4 | B.1.160.9 | 0.028777 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 4 | 4 | B.1.177.77 | 0.002905 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 4 | 4 | B.1.416.1 | 0.00625 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 3 | 3 | AY.11 | 0.004016 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 3 | 3 | AY.34.1 | 0.00153 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 3 | 3 | B | 0.000383 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 3 | 3 | B.1.1.189 | 0.004539 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 3 | 3 | B.1.1.50 | 0.002037 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 3 | 3 | B.1.146 | 0.012712 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 3 | 3 | B.1.160.15 | 0.014851 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 3 | 3 | B.1.574 | 0.006452 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 3 | 3 | B.1.9.4 | 0.018405 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 3 | 3 | B.1.9.5 | 0.017045 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | B.1.1.170 | 0.002494 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | B.1.1.232 | 0.00363 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | B.1.1.47 | 0.010695 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | B.1.160.10 | 0.016129 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | B.1.160.22 | 0.013514 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | B.1.160.31 | 0.016129 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | B.1.160.32 | 0.008584 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | B.1.177.23 | 0.006472 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | B.1.177.71 | 0.020202 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | B.1.177.89 | 0.04878 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.1.144 | 0.028571 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.1.384 | 0.02381 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.1.428 | 0.009434 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.1.442 | 0.018519 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.1.72 | 0.030303 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.177.80 | 0.001912 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.390 | 0.010638 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.478 | 0.011765 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp4 | 498 | V498I | Gtt | Att | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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