CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 494

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4494I494II3257IsynatCatT594758250.97948510034-10036
ORF1ab/nsp4494I494II3257IsynatCatA59471220.020514510034-10036
ORF1ab/nsp4494I494VI3257VnonsynAtcGtc773773110034-10036
ORF1ab/nsp4494I494delI3257deldelATC---6262110034-10036
ORF1ab/nsp4494I494TI3257TnonsynaTcaCc1212110034-10036
ORF1ab/nsp4494I494del2I3257del2delaTCa--750.71428610034-10036
ORF1ab/nsp4494I494del2I3257del2delATc--c720.28571410034-10036
ORF1ab/nsp4494I494FI3257FnonsynAtcTtc540.810034-10036
ORF1ab/nsp4494I494NI3257NnonsynaTcaAc540.810034-10036
ORF1ab/nsp4494I494LI3257LnonsynAtcCtc530.610034-10036
ORF1ab/nsp4494I494LI3257LnonsynAtCCtA520.410034-10036
ORF1ab/nsp4494I494FI3257FnonsynAtCTtT510.210034-10036
ORF1ab/nsp4494I494NI3257NnonsynaTCaAT510.210034-10036
ORF1ab/nsp4494I494del1I3257del1delAtc-tc420.510034-10036
ORF1ab/nsp4494I494del1I3257del1delatCat-420.510034-10036
ORF1ab/nsp4494I494SI3257SnonsynaTcaGc22110034-10036
ORF1ab/nsp4494I494MI3257MnonsynatCatG22110034-10036
ORF1ab/nsp4494I494YI3257YnonsynATCTAT210.510034-10036
ORF1ab/nsp4494I494YI3257YnonsynATcTAc210.510034-10036
ORF1ab/nsp4494I494WI3257WnonsynATCTGG11110034-10036

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4494I494IatCatT58255947All0.001114
ORF1ab/nsp4494I494IatCatA1225947All0.000023
ORF1ab/nsp4494I494IatCatT25252547B.1.1.70.00226
ORF1ab/nsp4494I494IatCatA222547B.1.1.70.00002
ORF1ab/nsp4494I494VAtcGtc773773All0.000148
ORF1ab/nsp4494I494VAtcGtc452452AY.40.000704
ORF1ab/nsp4494I494IatCatT300301B.1.617.20.00113
ORF1ab/nsp4494I494IatCatA1301B.1.617.20.000004
ORF1ab/nsp4494I494IatCatT268268AY.150.595556
ORF1ab/nsp4494I494IatCatT225230AY.40.00035
ORF1ab/nsp4494I494IatCatA5230AY.40.000008
ORF1ab/nsp4494I494IatCatT220220B.1.1770.002897
ORF1ab/nsp4494I494IatCatT207207B.1.1.2220.042228
ORF1ab/nsp4494I494IatCatT194199B.1.20.001708
ORF1ab/nsp4494I494IatCatA5199B.1.20.000044
ORF1ab/nsp4494I494IatCatT114114B.1.5260.00268
ORF1ab/nsp4494I494IatCatT110112AY.250.000662
ORF1ab/nsp4494I494IatCatA2112AY.250.000012
ORF1ab/nsp4494I494IatCatT106106P.10.00167
ORF1ab/nsp4494I494VAtcGtc8888AY.430.00039
ORF1ab/nsp4494I494IatCatT8182AY.260.002293
ORF1ab/nsp4494I494IatCatA182AY.260.000028
ORF1ab/nsp4494I494IatCatT7676AY.130.012234
ORF1ab/nsp4494I494IatCatT7676AY.440.000463
ORF1ab/nsp4494I494IatCatT7074AY.1030.000435
ORF1ab/nsp4494I494IatCatA474AY.1030.000025
ORF1ab/nsp4494I494VAtcGtc6969B.1.617.20.00026
ORF1ab/nsp4494I494IatCatT6566AY.1020.001723
ORF1ab/nsp4494I494IatCatA166AY.1020.000027
ORF1ab/nsp4494I494delATC---6262All0.000012
ORF1ab/nsp4494I494IatCatT6262B.1.4290.001459
ORF1ab/nsp4494I494IatCatT5959B.1.177.730.033409
ORF1ab/nsp4494I494VAtcGtc5151AY.1200.001896
ORF1ab/nsp4494I494IatCatT4749B.10.00043
ORF1ab/nsp4494I494IatCatA249B.10.000018
ORF1ab/nsp4494I494IatCatT4545B.1.2430.003131
ORF1ab/nsp4494I494IatCatT4041AY.360.005929
ORF1ab/nsp4494I494IatCatA141AY.360.000148
ORF1ab/nsp4494I494IatCatT3939P.1.160.01459
ORF1ab/nsp4494I494IatCatT3037AY.30.000298
ORF1ab/nsp4494I494IatCatA737AY.30.00007
ORF1ab/nsp4494I494IatCatT3434B.1.2390.041514
ORF1ab/nsp4494I494IatCatA3434B.1.6390.73913
ORF1ab/nsp4494I494IatCatT3131B.1.10.000562
ORF1ab/nsp4494I494VAtcGtc3030AY.1210.00406
ORF1ab/nsp4494I494IatCatT2530AY.430.000111
ORF1ab/nsp4494I494IatCatA530AY.430.000022
ORF1ab/nsp4494I494IatCatT3030B.1.2210.002131
ORF1ab/nsp4494I494IatCatT2929B.1.3510.000862
ORF1ab/nsp4494I494delATC---2828B.1.1.70.000025
ORF1ab/nsp4494I494IatCatT2121B.1.1.700.007162
ORF1ab/nsp4494I494IatCatT1720AY.200.000661
ORF1ab/nsp4494I494IatCatA320AY.200.000117
ORF1ab/nsp4494I494IatCatT2020B.1.258.170.002079
ORF1ab/nsp4494I494IatCatT1919B.1.177.810.003597
ORF1ab/nsp4494I494IatCatT1818P.20.003359
ORF1ab/nsp4494I494IatCatT1818Q.80.002968
ORF1ab/nsp4494I494IatCatT1818R.10.00162
ORF1ab/nsp4494I494IatCatT1717AY.980.001343
ORF1ab/nsp4494I494IatCatT1616AY.1170.001352
ORF1ab/nsp4494I494IatCatT1616AY.540.001526
ORF1ab/nsp4494I494IatCatT1616B.1.1.1890.024206
ORF1ab/nsp4494I494VAtcGtc1515AY.200.000583
ORF1ab/nsp4494I494IatCatT1515AY.390.000371
ORF1ab/nsp4494I494IatCatT1415B.1.1.5190.000556
ORF1ab/nsp4494I494IatCatA115B.1.1.5190.00004
ORF1ab/nsp4494I494IatCatT1414AY.1180.000877
ORF1ab/nsp4494I494IatCatT1414B.1.1790.052632
ORF1ab/nsp4494I494IatCatT1414B.1.466.20.005477
ORF1ab/nsp4494I494IatCatT1313AY.9.20.000477
ORF1ab/nsp4494I494TaTcaCc1212All0.000002
ORF1ab/nsp4494I494IatCatT1212B.1.5170.005124
ORF1ab/nsp4494I494IatCatT1111AY.290.000174
ORF1ab/nsp4494I494IatCatA1111C.370.001277
ORF1ab/nsp4494I494IatCatT1010AY.780.015408
ORF1ab/nsp4494I494IatCatT1010B.1.177.860.001835
ORF1ab/nsp4494I494IatCatT1010P.1.140.000478
ORF1ab/nsp4494I494VAtcGtc99AY.390.000222
ORF1ab/nsp4494I494IatCatT89AY.4.50.00086
ORF1ab/nsp4494I494IatCatA19AY.4.50.000107
ORF1ab/nsp4494I494IatCatT99B.1.1600.000281
ORF1ab/nsp4494I494IatCatT99B.1.5640.003833
ORF1ab/nsp4494I494IatCatT88AY.1200.000297
ORF1ab/nsp4494I494IatCatT88AY.230.000558
ORF1ab/nsp4494I494IatCatA58AY.23.10.002087
ORF1ab/nsp4494I494IatCatT38AY.23.10.001252
ORF1ab/nsp4494I494IatCatT88B.1.360.001167
ORF1ab/nsp4494I494IatCatT88B.1.90.049383
ORF1ab/nsp4494I494del2aTCa--57All0.000001
ORF1ab/nsp4494I494del2ATc--c27All0
ORF1ab/nsp4494I494IatCatT77AY.9.10.000586
ORF1ab/nsp4494I494IatCatT77B.1.4270.000353
ORF1ab/nsp4494I494IatCatT77B.1.438.10.000751
ORF1ab/nsp4494I494IatCatT77B.1.5960.00061
ORF1ab/nsp4494I494IatCatT77Q.20.004294
ORF1ab/nsp4494I494IatCatT56AY.1000.00023
ORF1ab/nsp4494I494IatCatA16AY.1000.000046
ORF1ab/nsp4494I494VAtcGtc66AY.250.000036
ORF1ab/nsp4494I494IatCatT66AY.330.000401
ORF1ab/nsp4494I494IatCatT66AY.4.20.00013
ORF1ab/nsp4494I494NaTcaAc45All0.000001
ORF1ab/nsp4494I494FAtcTtc45All0.000001
ORF1ab/nsp4494I494LAtcCtc35All0.000001
ORF1ab/nsp4494I494LAtCCtA25All0
ORF1ab/nsp4494I494FAtCTtT15All0
ORF1ab/nsp4494I494NaTCaAT15All0
ORF1ab/nsp4494I494IatCatT55AY.270.000324
ORF1ab/nsp4494I494IatCatT55AY.460.00052
ORF1ab/nsp4494I494IatCatT55AY.46.40.000823
ORF1ab/nsp4494I494IatCatT55AY.50.000103
ORF1ab/nsp4494I494IatCatT55AY.580.004537
ORF1ab/nsp4494I494IatCatT55AY.590.002648
ORF1ab/nsp4494I494IatCatT55AY.610.000524
ORF1ab/nsp4494I494IatCatT55AY.960.010373
ORF1ab/nsp4494I494IatCatT55B.1.3690.001426
ORF1ab/nsp4494I494del1Atc-tc24All0
ORF1ab/nsp4494I494del1atCat-24All0
ORF1ab/nsp4494I494VAtcGtc44AY.1080.00441
ORF1ab/nsp4494I494VAtcGtc44AY.30.00004
ORF1ab/nsp4494I494IatCatT44AY.380.001997
ORF1ab/nsp4494I494IatCatT44AY.39.10.000158
ORF1ab/nsp4494I494delATC---44AY.4.50.00043
ORF1ab/nsp4494I494VAtcGtc44AY.450.000487
ORF1ab/nsp4494I494IatCatT44AY.530.00115
ORF1ab/nsp4494I494IatCatT44AY.60.000165
ORF1ab/nsp4494I494IatCatT24AY.750.000112
ORF1ab/nsp4494I494IatCatA24AY.750.000112
ORF1ab/nsp4494I494IatCatT44AY.90.00027
ORF1ab/nsp4494I494IatCatT34B0.000383
ORF1ab/nsp4494I494IatCatA14B0.000128
ORF1ab/nsp4494I494IatCatT44B.1.1.2160.003562
ORF1ab/nsp4494I494IatCatT44B.1.1.4860.006309
ORF1ab/nsp4494I494IatCatT44B.1.177.570.001124
ORF1ab/nsp4494I494IatCatT44B.1.2580.000266
ORF1ab/nsp4494I494IatCatT44B.1.36.290.002069
ORF1ab/nsp4494I494IatCatT33A.2.50.001497
ORF1ab/nsp4494I494VAtcGtc33AY.1020.00008
ORF1ab/nsp4494I494IatCatT33AY.1130.000427
ORF1ab/nsp4494I494VAtcGtc33AY.1170.000254
ORF1ab/nsp4494I494IatCatT33AY.1190.000106
ORF1ab/nsp4494I494IatCatT33AY.1210.000406
ORF1ab/nsp4494I494VAtcGtc33AY.440.000018
ORF1ab/nsp4494I494IatCatT33AY.450.000365
ORF1ab/nsp4494I494IatCatT33AY.710.001425
ORF1ab/nsp4494I494VAtcGtc33B.10.000027
ORF1ab/nsp4494I494NaTcaAc23B.10.000018
ORF1ab/nsp4494I494NaTCaAT13B.10.000009
ORF1ab/nsp4494I494delATC---33B.1.10.000054
ORF1ab/nsp4494I494IatCatT33B.1.1.3370.010791
ORF1ab/nsp4494I494IatCatT33B.1.3670.002377
ORF1ab/nsp4494I494IatCatT33B.1.4780.035294
ORF1ab/nsp4494I494IatCatT33B.1.621.10.001517
ORF1ab/nsp4494I494IatCatT33P.1.150.000697
ORF1ab/nsp4494I494IatCatT33P.1.70.000958
ORF1ab/nsp4494I494IatCatT33Q.10.000379
ORF1ab/nsp4494I494IatCatT12A0.000387
ORF1ab/nsp4494I494IatCatA12A0.000387
ORF1ab/nsp4494I494IatCatT22A.10.000564
ORF1ab/nsp4494I494SaTcaGc22All0
ORF1ab/nsp4494I494MatCatG22All0
ORF1ab/nsp4494I494YATCTAT12All0
ORF1ab/nsp4494I494YATcTAc12All0
ORF1ab/nsp4494I494del2aTCa--22AY.1020.000053
ORF1ab/nsp4494I494IatCatT22AY.120.10.000642
ORF1ab/nsp4494I494IatCatT22AY.16.10.00094
ORF1ab/nsp4494I494IatCatT22AY.190.002281
ORF1ab/nsp4494I494VAtcGtc22AY.290.000032
ORF1ab/nsp4494I494IatCatT22AY.3.10.000171
ORF1ab/nsp4494I494IatCatT22AY.320.001065
ORF1ab/nsp4494I494VAtcGtc22AY.330.000134
ORF1ab/nsp4494I494delATC---22AY.40.000003
ORF1ab/nsp4494I494IatCatA12AY.420.00004
ORF1ab/nsp4494I494IatCatT12AY.420.00004
ORF1ab/nsp4494I494delATC---22AY.430.000009
ORF1ab/nsp4494I494VAtcGtc22AY.460.000208
ORF1ab/nsp4494I494VAtcGtc22AY.46.10.002053
ORF1ab/nsp4494I494IatCatT22AY.46.60.000144
ORF1ab/nsp4494I494VAtcGtc22AY.50.000041
ORF1ab/nsp4494I494IatCatT22AY.5.40.000553
ORF1ab/nsp4494I494IatCatT22AY.700.000417
ORF1ab/nsp4494I494IatCatT22AY.720.002721
ORF1ab/nsp4494I494delATC---22AY.750.000112
ORF1ab/nsp4494I494IatCatA12AY.75.10.00018
ORF1ab/nsp4494I494IatCatT12AY.75.10.00018
ORF1ab/nsp4494I494IatCatT22AY.770.002255
ORF1ab/nsp4494I494IatCatT22AY.850.000854
ORF1ab/nsp4494I494IatCatT22AY.900.001369
ORF1ab/nsp4494I494IatCatT22AY.98.10.000097
ORF1ab/nsp4494I494IatCatT22AY.99.20.000184
ORF1ab/nsp4494I494FAtcTtc12B.10.000009
ORF1ab/nsp4494I494YATCTAT12B.10.000009
ORF1ab/nsp4494I494FAtCTtT12B.10.000009
ORF1ab/nsp4494I494YATcTAc12B.10.000009
ORF1ab/nsp4494I494IatCatT22B.1.1.1860.006873
ORF1ab/nsp4494I494IatCatT22B.1.1.1920.004619
ORF1ab/nsp4494I494IatCatT22B.1.1.2070.002364
ORF1ab/nsp4494I494IatCatT22B.1.1.2140.000111
ORF1ab/nsp4494I494IatCatT22B.1.1.2630.003115
ORF1ab/nsp4494I494IatCatT22B.1.1.2740.010101
ORF1ab/nsp4494I494IatCatT22B.1.1.3110.000716
ORF1ab/nsp4494I494IatCatT22B.1.1.3700.025316
ORF1ab/nsp4494I494IatCatT22B.1.1.440.004819
ORF1ab/nsp4494I494IatCatT22B.1.1.5280.009615
ORF1ab/nsp4494I494TaTcaCc22B.1.1.70.000002
ORF1ab/nsp4494I494del2ATc--c22B.1.1.70.000002
ORF1ab/nsp4494I494IatCatT22B.1.1470.001512
ORF1ab/nsp4494I494delATC---22B.1.1770.000026
ORF1ab/nsp4494I494IatCatT22B.1.177.440.001038
ORF1ab/nsp4494I494TaTcaCc22B.1.20.000018
ORF1ab/nsp4494I494IatCatT22B.1.3960.001411
ORF1ab/nsp4494I494IatCatT22B.1.617.10.000258
ORF1ab/nsp4494I494IatCatA12B.1.6210.000089
ORF1ab/nsp4494I494IatCatT12B.1.6210.000089
ORF1ab/nsp4494I494IatCatT22B.1.6310.006734
ORF1ab/nsp4494I494IatCatT22C.160.002121
ORF1ab/nsp4494I494IatCatT11A.30.002096
ORF1ab/nsp4494I494IatCatT11AD.20.000219
ORF1ab/nsp4494I494WATCTGG11All0
ORF1ab/nsp4494I494IatCatT11AM.40.003571
ORF1ab/nsp4494I494IatCatT11AP.10.001502
ORF1ab/nsp4494I494VAtcGtc11AY.1000.000046
ORF1ab/nsp4494I494VAtcGtc11AY.1030.000006
ORF1ab/nsp4494I494IatCatT11AY.1060.000335
ORF1ab/nsp4494I494IatCatT11AY.1080.001103
ORF1ab/nsp4494I494delATC---11AY.1110.000183
ORF1ab/nsp4494I494IatCatT11AY.1140.000231
ORF1ab/nsp4494I494IatCatT11AY.1160.000287
ORF1ab/nsp4494I494IatCatT11AY.116.10.000311
ORF1ab/nsp4494I494VAtcGtc11AY.1180.000063
ORF1ab/nsp4494I494IatCatT11AY.140.000088
ORF1ab/nsp4494I494LAtcCtc11AY.250.000006
ORF1ab/nsp4494I494delATC---11AY.250.000006
ORF1ab/nsp4494I494IatCatT11AY.280.00189
ORF1ab/nsp4494I494IatCatT11AY.340.000097
ORF1ab/nsp4494I494IatCatT11AY.34.10.00051
ORF1ab/nsp4494I494delATC---11AY.390.000025
ORF1ab/nsp4494I494VAtcGtc11AY.4.20.000022
ORF1ab/nsp4494I494VAtcGtc11AY.4.30.000842
ORF1ab/nsp4494I494VAtcGtc11AY.420.00004
ORF1ab/nsp4494I494del2aTCa--11AY.430.000004
ORF1ab/nsp4494I494NaTcaAc11AY.430.000004
ORF1ab/nsp4494I494SaTcaGc11AY.430.000004
ORF1ab/nsp4494I494IatCatT11AY.46.10.001027
ORF1ab/nsp4494I494VAtcGtc11AY.46.20.000635
ORF1ab/nsp4494I494delATC---11AY.46.20.000635
ORF1ab/nsp4494I494IatCatT11AY.46.20.000635
ORF1ab/nsp4494I494IatCatT11AY.46.30.000934
ORF1ab/nsp4494I494IatCatT11AY.46.50.000198
ORF1ab/nsp4494I494VAtcGtc11AY.46.60.000072
ORF1ab/nsp4494I494IatCatT11AY.470.000031
ORF1ab/nsp4494I494del2aTCa--11AY.50.000021
ORF1ab/nsp4494I494IatCatT11AY.550.000917
ORF1ab/nsp4494I494IatCatT11AY.560.001605
ORF1ab/nsp4494I494IatCatT11AY.620.000436
ORF1ab/nsp4494I494delATC---11AY.70.000196
ORF1ab/nsp4494I494IatCatT11AY.7.10.000113
ORF1ab/nsp4494I494LAtCCtA11AY.750.000056
ORF1ab/nsp4494I494IatCatT11AY.760.004831
ORF1ab/nsp4494I494IatCatT11AY.840.000437
ORF1ab/nsp4494I494MatCatG11AY.9.2.10.001976
ORF1ab/nsp4494I494IatCatT11AY.930.000273
ORF1ab/nsp4494I494VAtcGtc11AY.950.000761
ORF1ab/nsp4494I494del2aTCa--11B.10.000009
ORF1ab/nsp4494I494TaTcaCc11B.10.000009
ORF1ab/nsp4494I494delATC---11B.10.000009
ORF1ab/nsp4494I494WATCTGG11B.10.000009
ORF1ab/nsp4494I494SaTcaGc11B.10.000009
ORF1ab/nsp4494I494TaTcaCc11B.1.10.000018
ORF1ab/nsp4494I494IatCatT11B.1.1.10.000327
ORF1ab/nsp4494I494IatCatT11B.1.1.1220.045455
ORF1ab/nsp4494I494delATC---11B.1.1.1390.022727
ORF1ab/nsp4494I494IatCatA11B.1.1.1700.001247
ORF1ab/nsp4494I494IatCatT11B.1.1.1740.003378
ORF1ab/nsp4494I494IatCatT11B.1.1.1980.001468
ORF1ab/nsp4494I494IatCatT11B.1.1.250.000569
ORF1ab/nsp4494I494IatCatT11B.1.1.2730.006757
ORF1ab/nsp4494I494VAtcGtc11B.1.1.280.000311
ORF1ab/nsp4494I494IatCatT11B.1.1.280.000311
ORF1ab/nsp4494I494VAtcGtc11B.1.1.3060.000438
ORF1ab/nsp4494I494delATC---11B.1.1.3110.000358
ORF1ab/nsp4494I494IatCatT11B.1.1.3120.001912
ORF1ab/nsp4494I494IatCatT11B.1.1.3160.000925
ORF1ab/nsp4494I494IatCatT11B.1.1.3170.000412
ORF1ab/nsp4494I494IatCatT11B.1.1.330.000421
ORF1ab/nsp4494I494IatCatT11B.1.1.370.000193
ORF1ab/nsp4494I494IatCatT11B.1.1.3740.002375
ORF1ab/nsp4494I494delATC---11B.1.1.4090.002833
ORF1ab/nsp4494I494IatCatT11B.1.1.410.006329
ORF1ab/nsp4494I494IatCatT11B.1.1.4160.000905
ORF1ab/nsp4494I494TaTcaCc11B.1.1.4320.001266
ORF1ab/nsp4494I494IatCatT11B.1.1.460.004367
ORF1ab/nsp4494I494IatCatT11B.1.1.4660.008696
ORF1ab/nsp4494I494VAtcGtc11B.1.1.5190.00004
ORF1ab/nsp4494I494VAtcGtc11B.1.1.5210.005348
ORF1ab/nsp4494I494IatCatT11B.1.1.5230.001563
ORF1ab/nsp4494I494IatCatT11B.1.1.5250.005464
ORF1ab/nsp4494I494FAtcTtc11B.1.1.70.000001
ORF1ab/nsp4494I494VAtcGtc11B.1.1.70.000001
ORF1ab/nsp4494I494MatCatG11B.1.1.70.000001
ORF1ab/nsp4494I494del1atCat-11B.1.1.70.000001
ORF1ab/nsp4494I494NaTcaAc11B.1.1.70.000001
ORF1ab/nsp4494I494LAtCCtA11B.1.1.70.000001
ORF1ab/nsp4494I494delATC---11B.1.1.700.000341
ORF1ab/nsp4494I494delATC---11B.1.1610.017241
ORF1ab/nsp4494I494VAtcGtc11B.1.1770.000013
ORF1ab/nsp4494I494delATC---11B.1.177.100.000878
ORF1ab/nsp4494I494del1Atc-tc11B.1.177.150.000631
ORF1ab/nsp4494I494IatCatT11B.1.177.210.000076
ORF1ab/nsp4494I494delATC---11B.1.177.40.000211
ORF1ab/nsp4494I494IatCatT11B.1.177.40.000211
ORF1ab/nsp4494I494del1Atc-tc11B.1.177.40.000211
ORF1ab/nsp4494I494IatCatT11B.1.177.450.000381
ORF1ab/nsp4494I494delATC---11B.1.177.60.000977
ORF1ab/nsp4494I494IatCatT11B.1.177.650.000665
ORF1ab/nsp4494I494delATC---11B.1.177.690.001484
ORF1ab/nsp4494I494IatCatT11B.1.177.70.000165
ORF1ab/nsp4494I494TaTcaCc11B.1.177.730.000566
ORF1ab/nsp4494I494delATC---11B.1.177.810.000189
ORF1ab/nsp4494I494delATC---11B.1.1790.003759
ORF1ab/nsp4494I494IatCatT11B.1.1890.004292
ORF1ab/nsp4494I494IatCatT11B.1.1920.009259
ORF1ab/nsp4494I494FAtcTtc11B.1.20.000009
ORF1ab/nsp4494I494IatCatT11B.1.214.20.0006
ORF1ab/nsp4494I494VAtcGtc11B.1.2210.000071
ORF1ab/nsp4494I494FAtcTtc11B.1.2340.000132
ORF1ab/nsp4494I494IatCatT11B.1.2340.000132
ORF1ab/nsp4494I494IatCatT11B.1.258.120.007874
ORF1ab/nsp4494I494IatCatT11B.1.258.160.001637
ORF1ab/nsp4494I494VAtcGtc11B.1.3290.000608
ORF1ab/nsp4494I494IatCatT11B.1.3380.008621
ORF1ab/nsp4494I494VAtcGtc11B.1.3510.00003
ORF1ab/nsp4494I494IatCatT11B.1.351.20.000303
ORF1ab/nsp4494I494del1atCat-11B.1.360.000146
ORF1ab/nsp4494I494IatCatT11B.1.36.10.00114
ORF1ab/nsp4494I494delATC---11B.1.36.180.00042
ORF1ab/nsp4494I494IatCatT11B.1.36.80.001
ORF1ab/nsp4494I494IatCatT11B.1.3890.001002
ORF1ab/nsp4494I494IatCatT11B.1.3950.007042
ORF1ab/nsp4494I494IatCatT11B.1.4000.000429
ORF1ab/nsp4494I494IatCatT11B.1.4110.003704
ORF1ab/nsp4494I494IatCatT11B.1.4230.010204
ORF1ab/nsp4494I494TaTcaCc11B.1.4730.019231
ORF1ab/nsp4494I494IatCatT11B.1.5250.000113
ORF1ab/nsp4494I494IatCatT11B.1.5670.003333
ORF1ab/nsp4494I494LAtcCtc11B.1.5770.000687
ORF1ab/nsp4494I494TaTcaCc11B.1.5960.000087
ORF1ab/nsp4494I494IatCatT11B.1.5970.00463
ORF1ab/nsp4494I494TaTcaCc11B.1.617.20.000004
ORF1ab/nsp4494I494IatCatT11B.1.619.10.000641
ORF1ab/nsp4494I494IatCatA11B.1.6230.000536
ORF1ab/nsp4494I494IatCatT11B.1.6300.005236
ORF1ab/nsp4494I494LAtcCtc11B.420.033333
ORF1ab/nsp4494I494IatCatT11C.180.002591
ORF1ab/nsp4494I494TaTcaCc11C.20.016129
ORF1ab/nsp4494I494delATC---11C.350.000774
ORF1ab/nsp4494I494VAtcGtc11C.350.000774
ORF1ab/nsp4494I494IatCatA11C.390.018868
ORF1ab/nsp4494I494IatCatT11D.20.000075
ORF1ab/nsp4494I494IatCatT11P.1.10.10.00813
ORF1ab/nsp4494I494IatCatT11P.1.120.000484
ORF1ab/nsp4494I494IatCatT11P.1.80.004785
ORF1ab/nsp4494I494IatCatT11P.30.001595
ORF1ab/nsp4494I494IatCatT11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.