CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 478

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4478F478FF3241FsynttCttT2558255819986-9988
ORF1ab/nsp4478F478delF3241deldelTTC---666619986-9988
ORF1ab/nsp4478F478LF3241LnonsynTtcCtc22150.6818189986-9988
ORF1ab/nsp4478F478LF3241LnonsynttCttA2270.3181829986-9988
ORF1ab/nsp4478F478SF3241SnonsyntTctCc760.8571439986-9988
ORF1ab/nsp4478F478SF3241SnonsyntTCtCT710.1428579986-9988
ORF1ab/nsp4478F478YF3241YnonsyntTctAc6619986-9988
ORF1ab/nsp4478F478del1F3241del1delttCtt-420.59986-9988
ORF1ab/nsp4478F478del1F3241del1delTtc-tc420.59986-9988
ORF1ab/nsp4478F478IF3241InonsynTtcAtc3319986-9988
ORF1ab/nsp4478F478VF3241VnonsynTtcGtc2219986-9988
ORF1ab/nsp4478F478del2F3241del2deltTCt--1119986-9988
ORF1ab/nsp4478F478CF3241CnonsyntTctGc1119986-9988

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4478F478FttCttT25582558All0.000489
ORF1ab/nsp4478F478FttCttT12731273AY.90.086048
ORF1ab/nsp4478F478FttCttT231231A.280.611111
ORF1ab/nsp4478F478FttCttT193193B.1.1.70.000173
ORF1ab/nsp4478F478FttCttT7878Y.11
ORF1ab/nsp4478F478delTTC---6666All0.000013
ORF1ab/nsp4478F478FttCttT6464B.1.617.20.000241
ORF1ab/nsp4478F478FttCttT5353B.1.4290.001247
ORF1ab/nsp4478F478FttCttT4949AY.470.001524
ORF1ab/nsp4478F478FttCttT3535AY.40.000054
ORF1ab/nsp4478F478FttCttT3434AY.39.10.001347
ORF1ab/nsp4478F478FttCttT3131B.1.177.520.054482
ORF1ab/nsp4478F478FttCttT2929B.1.1770.000382
ORF1ab/nsp4478F478delTTC---2727B.1.1.70.000024
ORF1ab/nsp4478F478FttCttT2626AY.390.000642
ORF1ab/nsp4478F478FttCttT2424AY.430.000106
ORF1ab/nsp4478F478LTtcCtc1522All0.000003
ORF1ab/nsp4478F478LttCttA722All0.000001
ORF1ab/nsp4478F478FttCttT2121AY.30.000209
ORF1ab/nsp4478F478FttCttT2121B.10.000192
ORF1ab/nsp4478F478FttCttT2020AY.250.00012
ORF1ab/nsp4478F478FttCttT1818B.1.10.000327
ORF1ab/nsp4478F478FttCttT1818B.1.1.500.01222
ORF1ab/nsp4478F478FttCttT1818B.1.5950.004697
ORF1ab/nsp4478F478FttCttT1818P.10.000284
ORF1ab/nsp4478F478FttCttT1717B.1.1.2220.003468
ORF1ab/nsp4478F478FttCttT1515AY.10.005936
ORF1ab/nsp4478F478FttCttT1414AY.1030.000087
ORF1ab/nsp4478F478FttCttT1313AY.440.000079
ORF1ab/nsp4478F478FttCttT1313B.1.5750.003944
ORF1ab/nsp4478F478FttCttT99AY.130.001449
ORF1ab/nsp4478F478FttCttT88AY.1170.000676
ORF1ab/nsp4478F478FttCttT88AY.1190.000282
ORF1ab/nsp4478F478FttCttT88AY.120.10.002568
ORF1ab/nsp4478F478FttCttT88AY.910.005844
ORF1ab/nsp4478F478StTctCc67All0.000001
ORF1ab/nsp4478F478StTCtCT17All0
ORF1ab/nsp4478F478FttCttT77B.1.1600.000218
ORF1ab/nsp4478F478FttCttT77B.1.20.000062
ORF1ab/nsp4478F478YtTctAc66All0.000001
ORF1ab/nsp4478F478FttCttT66AY.75.10.001082
ORF1ab/nsp4478F478delTTC---66B.10.000055
ORF1ab/nsp4478F478FttCttT66B.1.1.3170.00247
ORF1ab/nsp4478F478FttCttT55AY.1000.00023
ORF1ab/nsp4478F478FttCttT55AY.1020.000133
ORF1ab/nsp4478F478FttCttT55AY.200.000194
ORF1ab/nsp4478F478FttCttT55AY.230.000349
ORF1ab/nsp4478F478FttCttT55AY.540.000477
ORF1ab/nsp4478F478FttCttT55AY.610.000524
ORF1ab/nsp4478F478FttCttT55B.1.177.670.038168
ORF1ab/nsp4478F478del1Ttc-tc24All0
ORF1ab/nsp4478F478del1ttCtt-24All0
ORF1ab/nsp4478F478FttCttT44AY.1130.00057
ORF1ab/nsp4478F478FttCttT44AY.260.000113
ORF1ab/nsp4478F478FttCttT44AY.4.20.000087
ORF1ab/nsp4478F478FttCttT44B0.000511
ORF1ab/nsp4478F478LTtcCtc24B.10.000018
ORF1ab/nsp4478F478LttCttA24B.10.000018
ORF1ab/nsp4478F478FttCttT44B.1.360.000584
ORF1ab/nsp4478F478FttCttT44B.1.4270.000202
ORF1ab/nsp4478F478FttCttT44C.370.000464
ORF1ab/nsp4478F478ITtcAtc33All0.000001
ORF1ab/nsp4478F478FttCttT33AY.290.000047
ORF1ab/nsp4478F478FttCttT33AY.3.10.000256
ORF1ab/nsp4478F478delTTC---33AY.430.000013
ORF1ab/nsp4478F478FttCttT33AY.46.50.000595
ORF1ab/nsp4478F478delTTC---33AY.750.000168
ORF1ab/nsp4478F478YtTctAc33B.10.000027
ORF1ab/nsp4478F478FttCttT33B.1.2400.000647
ORF1ab/nsp4478F478FttCttT33B.1.36.180.001261
ORF1ab/nsp4478F478FttCttT33B.1.5250.000339
ORF1ab/nsp4478F478FttCttT33B.1.5610.001191
ORF1ab/nsp4478F478FttCttT33B.1.6210.000266
ORF1ab/nsp4478F478FttCttT22AD.20.000438
ORF1ab/nsp4478F478VTtcGtc22All0
ORF1ab/nsp4478F478FttCttT22AY.1160.000574
ORF1ab/nsp4478F478FttCttT22AY.1200.000074
ORF1ab/nsp4478F478FttCttT22AY.340.000194
ORF1ab/nsp4478F478delTTC---22AY.40.000003
ORF1ab/nsp4478F478YtTctAc22AY.40.000003
ORF1ab/nsp4478F478delTTC---22AY.4.50.000215
ORF1ab/nsp4478F478FttCttT22AY.460.000208
ORF1ab/nsp4478F478FttCttT22AY.580.001815
ORF1ab/nsp4478F478FttCttT22AY.9.10.000167
ORF1ab/nsp4478F478FttCttT22AY.9.20.000073
ORF1ab/nsp4478F478FttCttT22AY.900.001369
ORF1ab/nsp4478F478delTTC---22B.1.10.000036
ORF1ab/nsp4478F478FttCttT22B.1.1.2690.002706
ORF1ab/nsp4478F478FttCttT22B.1.1.3480.001592
ORF1ab/nsp4478F478FttCttT22B.1.1.5190.000079
ORF1ab/nsp4478F478FttCttT22B.1.1.80.007168
ORF1ab/nsp4478F478delTTC---22B.1.1770.000026
ORF1ab/nsp4478F478LTtcCtc22B.1.2210.000142
ORF1ab/nsp4478F478FttCttT22B.1.3110.000549
ORF1ab/nsp4478F478FttCttT22B.1.5260.000047
ORF1ab/nsp4478F478FttCttT22B.1.5820.000981
ORF1ab/nsp4478F478LttCttA12B.1.5960.000087
ORF1ab/nsp4478F478LTtcCtc12B.1.5960.000087
ORF1ab/nsp4478F478del1Ttc-tc12B.1.617.20.000004
ORF1ab/nsp4478F478LTtcCtc12B.1.617.20.000004
ORF1ab/nsp4478F478LttCttA12B.1.617.20.000004
ORF1ab/nsp4478F478del1ttCtt-12B.1.617.20.000004
ORF1ab/nsp4478F478FttCttT22C.37.10.005236
ORF1ab/nsp4478F478delTTC---22P.10.000032
ORF1ab/nsp4478F478delTTC---22P.1.120.000968
ORF1ab/nsp4478F478FttCttT22P.1.140.000096
ORF1ab/nsp4478F478FttCttT110.055556
ORF1ab/nsp4478F478FttCttT11A0.000387
ORF1ab/nsp4478F478FttCttT11A.20.000662
ORF1ab/nsp4478F478del2tTCt--11All0
ORF1ab/nsp4478F478CtTctGc11All0
ORF1ab/nsp4478F478StTctCc11AY.1030.000006
ORF1ab/nsp4478F478FttCttT11AY.1140.000231
ORF1ab/nsp4478F478LTtcCtc11AY.1190.000035
ORF1ab/nsp4478F478StTCtCT11AY.1200.000037
ORF1ab/nsp4478F478FttCttT11AY.160.00038
ORF1ab/nsp4478F478FttCttT11AY.20.000356
ORF1ab/nsp4478F478delTTC---11AY.250.000006
ORF1ab/nsp4478F478FttCttT11AY.270.000065
ORF1ab/nsp4478F478FttCttT11AY.330.000067
ORF1ab/nsp4478F478FttCttT11AY.34.10.00051
ORF1ab/nsp4478F478YtTctAc11AY.390.000025
ORF1ab/nsp4478F478delTTC---11AY.390.000025
ORF1ab/nsp4478F478FttCttT11AY.4.50.000107
ORF1ab/nsp4478F478CtTctGc11AY.4.50.000107
ORF1ab/nsp4478F478FttCttT11AY.420.00004
ORF1ab/nsp4478F478LttCttA11AY.430.000004
ORF1ab/nsp4478F478FttCttT11AY.450.000122
ORF1ab/nsp4478F478delTTC---11AY.46.20.000635
ORF1ab/nsp4478F478FttCttT11AY.50.000021
ORF1ab/nsp4478F478delTTC---11AY.60.000041
ORF1ab/nsp4478F478FttCttT11AY.700.000209
ORF1ab/nsp4478F478FttCttT11AY.740.000116
ORF1ab/nsp4478F478FttCttT11AY.920.000287
ORF1ab/nsp4478F478FttCttT11AY.980.000079
ORF1ab/nsp4478F478delTTC---11AY.99.10.001553
ORF1ab/nsp4478F478FttCttT11AY.99.20.000092
ORF1ab/nsp4478F478LttCttA11B0.000128
ORF1ab/nsp4478F478VTtcGtc11B.10.000009
ORF1ab/nsp4478F478LTtcCtc11B.1.10.000018
ORF1ab/nsp4478F478ITtcAtc11B.1.10.000018
ORF1ab/nsp4478F478ITtcAtc11B.1.1.1390.022727
ORF1ab/nsp4478F478FttCttT11B.1.1.2070.001182
ORF1ab/nsp4478F478FttCttT11B.1.1.2730.006757
ORF1ab/nsp4478F478FttCttT11B.1.1.3120.001912
ORF1ab/nsp4478F478FttCttT11B.1.1.3160.000925
ORF1ab/nsp4478F478FttCttT11B.1.1.3330.001076
ORF1ab/nsp4478F478delTTC---11B.1.1.4090.002833
ORF1ab/nsp4478F478FttCttT11B.1.1.460.004367
ORF1ab/nsp4478F478FttCttT11B.1.1.4850.016667
ORF1ab/nsp4478F478StTctCc11B.1.1.500.000679
ORF1ab/nsp4478F478delTTC---11B.1.1.5280.004808
ORF1ab/nsp4478F478FttCttT11B.1.1.630.000386
ORF1ab/nsp4478F478LTtcCtc11B.1.1.70.000001
ORF1ab/nsp4478F478FttCttT11B.1.1110.001175
ORF1ab/nsp4478F478StTctCc11B.1.1770.000013
ORF1ab/nsp4478F478delTTC---11B.1.177.150.000631
ORF1ab/nsp4478F478delTTC---11B.1.177.40.000211
ORF1ab/nsp4478F478FttCttT11B.1.177.460.000918
ORF1ab/nsp4478F478VTtcGtc11B.1.177.540.000606
ORF1ab/nsp4478F478delTTC---11B.1.177.690.001484
ORF1ab/nsp4478F478delTTC---11B.1.177.70.000165
ORF1ab/nsp4478F478FttCttT11B.1.177.730.000566
ORF1ab/nsp4478F478delTTC---11B.1.177.810.000189
ORF1ab/nsp4478F478delTTC---11B.1.177.870.000728
ORF1ab/nsp4478F478delTTC---11B.1.1790.003759
ORF1ab/nsp4478F478del1Ttc-tc11B.1.20.000009
ORF1ab/nsp4478F478LTtcCtc11B.1.20.000009
ORF1ab/nsp4478F478FttCttT11B.1.2210.000071
ORF1ab/nsp4478F478FttCttT11B.1.2580.000067
ORF1ab/nsp4478F478FttCttT11B.1.2790.000514
ORF1ab/nsp4478F478delTTC---11B.1.36.180.00042
ORF1ab/nsp4478F478StTctCc11B.1.3890.001002
ORF1ab/nsp4478F478del1ttCtt-11B.1.3960.000706
ORF1ab/nsp4478F478FttCttT11B.1.4200.010417
ORF1ab/nsp4478F478StTctCc11B.1.4270.00005
ORF1ab/nsp4478F478LTtcCtc11B.1.4290.000024
ORF1ab/nsp4478F478StTctCc11B.1.466.20.000391
ORF1ab/nsp4478F478LTtcCtc11B.1.5440.006024
ORF1ab/nsp4478F478FttCttT11B.1.5640.000426
ORF1ab/nsp4478F478ITtcAtc11B.1.617.10.000129
ORF1ab/nsp4478F478FttCttT11B.1.6180.004032
ORF1ab/nsp4478F478FttCttT11B.1.6230.000536
ORF1ab/nsp4478F478FttCttT11B.1.6280.000352
ORF1ab/nsp4478F478FttCttT11B.1.6370.000073
ORF1ab/nsp4478F478LTtcCtc11B.4.50.011905
ORF1ab/nsp4478F478LttCttA11B.60.00091
ORF1ab/nsp4478F478FttCttT11C.110.010638
ORF1ab/nsp4478F478FttCttT11C.2.10.006667
ORF1ab/nsp4478F478del2tTCt--11C.350.000774
ORF1ab/nsp4478F478LTtcCtc11D.20.000075
ORF1ab/nsp4478F478LTtcCtc11P.10.000016
ORF1ab/nsp4478F478FttCttT11P.1.100.000269
ORF1ab/nsp4478F478FttCttT11Q.10.000126