CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 477 | D477D | D3240D | syn | gaC | gaT | 1927 | 1927 | 1 | 9983-9985 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1927 | 1927 | All | 0.000369 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 364 | 364 | B.1.1.7 | 0.000326 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 361 | 361 | AY.4 | 0.000562 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 149 | 149 | B.1.617.2 | 0.000561 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 126 | 126 | AY.103 | 0.000782 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 115 | 115 | B.1.1.519 | 0.004567 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 106 | 106 | AY.3.1 | 0.009037 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 77 | 77 | AY.44 | 0.000469 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 57 | 57 | B.1.429 | 0.001341 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 51 | 51 | AY.3 | 0.000507 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 38 | 38 | B.1.177.9 | 0.050599 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 32 | 32 | AY.61 | 0.003353 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 29 | 29 | AY.43 | 0.000128 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 25 | 25 | AY.39 | 0.000618 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 25 | 25 | P.1 | 0.000394 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 23 | 23 | AY.41 | 0.006761 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 21 | 21 | AY.20 | 0.000816 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 21 | 21 | AY.25 | 0.000126 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 20 | 20 | AY.26 | 0.000566 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 17 | 17 | B.1.2 | 0.00015 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 12 | 12 | B.1.177 | 0.000158 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 8 | 8 | AY.75 | 0.000448 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 7 | 7 | AY.106 | 0.002344 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 7 | 7 | B.1.596 | 0.00061 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 7 | 7 | R.1 | 0.00063 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 6 | 6 | AY.99 | 0.006296 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 5 | 5 | B.1.1.1 | 0.001633 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 4 | 4 | AY.68 | 0.001095 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 4 | 4 | C.36.3 | 0.002269 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 3 | 3 | AY.77 | 0.003382 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 3 | 3 | P.1.10 | 0.000808 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 2 | 2 | B.1.1.160 | 0.047619 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.177.80 | 0.001912 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.281 | 0.021739 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.552 | 0.015152 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.46 | 0.020833 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp4 | 477 | D477D | gaC | gaT | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|