CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 477

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4477D477DD3240DsyngaCgaT1927192719983-9985
ORF1ab/nsp4477D477AD3240AnonsyngAcgCc1291280.9922489983-9985
ORF1ab/nsp4477D477AD3240AnonsyngACgCT12910.007751949983-9985
ORF1ab/nsp4477D477GD3240GnonsyngAcgGc1261250.9920639983-9985
ORF1ab/nsp4477D477GD3240GnonsyngACgGT12610.007936519983-9985
ORF1ab/nsp4477D477ND3240NnonsynGacAac10510519983-9985
ORF1ab/nsp4477D477ED3240EnonsyngaCgaA90850.9444449983-9985
ORF1ab/nsp4477D477ED3240EnonsyngaCgaG9050.05555569983-9985
ORF1ab/nsp4477D477delD3240deldelGAC---656519983-9985
ORF1ab/nsp4477D477YD3240YnonsynGacTac202019983-9985
ORF1ab/nsp4477D477VD3240VnonsyngAcgTc3319983-9985
ORF1ab/nsp4477D477del1D3240del1delgAcg-c2219983-9985
ORF1ab/nsp4477D477HD3240HnonsynGacCac2219983-9985

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4477D477DgaCgaT19271927All0.000369
ORF1ab/nsp4477D477DgaCgaT364364B.1.1.70.000326
ORF1ab/nsp4477D477DgaCgaT361361AY.40.000562
ORF1ab/nsp4477D477DgaCgaT149149B.1.617.20.000561
ORF1ab/nsp4477D477AgAcgCc128129All0.000024
ORF1ab/nsp4477D477AgACgCT1129All0
ORF1ab/nsp4477D477GgAcgGc125126All0.000024
ORF1ab/nsp4477D477GgACgGT1126All0
ORF1ab/nsp4477D477DgaCgaT126126AY.1030.000782
ORF1ab/nsp4477D477GgAcgGc120120B.1.1.70.000107
ORF1ab/nsp4477D477DgaCgaT115115B.1.1.5190.004567
ORF1ab/nsp4477D477DgaCgaT106106AY.3.10.009037
ORF1ab/nsp4477D477NGacAac105105All0.00002
ORF1ab/nsp4477D477EgaCgaA8590All0.000016
ORF1ab/nsp4477D477EgaCgaG590All0.000001
ORF1ab/nsp4477D477DgaCgaT7777AY.440.000469
ORF1ab/nsp4477D477delGAC---6565All0.000012
ORF1ab/nsp4477D477DgaCgaT5757B.1.4290.001341
ORF1ab/nsp4477D477AgAcgCc5454B.1.2430.003758
ORF1ab/nsp4477D477DgaCgaT5151AY.30.000507
ORF1ab/nsp4477D477DgaCgaT3838B.1.177.90.050599
ORF1ab/nsp4477D477NGacAac3333B.10.000302
ORF1ab/nsp4477D477DgaCgaT3232AY.610.003353
ORF1ab/nsp4477D477DgaCgaT2929AY.430.000128
ORF1ab/nsp4477D477delGAC---2727B.1.1.70.000024
ORF1ab/nsp4477D477EgaCgaA2727B.1.3510.000803
ORF1ab/nsp4477D477DgaCgaT2525AY.390.000618
ORF1ab/nsp4477D477DgaCgaT2525P.10.000394
ORF1ab/nsp4477D477DgaCgaT2323AY.410.006761
ORF1ab/nsp4477D477DgaCgaT2121AY.200.000816
ORF1ab/nsp4477D477DgaCgaT2121AY.250.000126
ORF1ab/nsp4477D477YGacTac2020All0.000004
ORF1ab/nsp4477D477DgaCgaT2020AY.260.000566
ORF1ab/nsp4477D477AgAcgCc2020B.10.000183
ORF1ab/nsp4477D477AgAcgCc1919B.1.5001
ORF1ab/nsp4477D477DgaCgaT1717B.1.20.00015
ORF1ab/nsp4477D477NGacAac1616B.1.1.70.000014
ORF1ab/nsp4477D477EgaCgaA1414B.1.617.20.000053
ORF1ab/nsp4477D477DgaCgaT1313B.10.000119
ORF1ab/nsp4477D477DgaCgaT1212B.1.1770.000158
ORF1ab/nsp4477D477AgAcgCc1111B.1.1.70.00001
ORF1ab/nsp4477D477DgaCgaT99AY.1020.000239
ORF1ab/nsp4477D477NGacAac99AY.40.000014
ORF1ab/nsp4477D477AgAcgCc99B.1.617.20.000034
ORF1ab/nsp4477D477DgaCgaT88AY.750.000448
ORF1ab/nsp4477D477DgaCgaT88B.1.1600.00025
ORF1ab/nsp4477D477DgaCgaT77AY.1060.002344
ORF1ab/nsp4477D477DgaCgaT77B.1.5960.00061
ORF1ab/nsp4477D477DgaCgaT77R.10.00063
ORF1ab/nsp4477D477DgaCgaT66AY.990.006296
ORF1ab/nsp4477D477delGAC---66B.10.000055
ORF1ab/nsp4477D477NGacAac66B.1.20.000053
ORF1ab/nsp4477D477DgaCgaT66C.370.000696
ORF1ab/nsp4477D477DgaCgaT55AY.340.000485
ORF1ab/nsp4477D477EgaCgaA55AY.40.000008
ORF1ab/nsp4477D477EgaCgaA55AY.440.00003
ORF1ab/nsp4477D477DgaCgaT55AY.75.10.000902
ORF1ab/nsp4477D477DgaCgaT55AY.99.20.000461
ORF1ab/nsp4477D477DgaCgaT55B.1.1.10.001633
ORF1ab/nsp4477D477DgaCgaT55B.1.2430.000348
ORF1ab/nsp4477D477DgaCgaT55B.1.3510.000149
ORF1ab/nsp4477D477DgaCgaT55B.1.5260.000118
ORF1ab/nsp4477D477DgaCgaT44AY.470.000124
ORF1ab/nsp4477D477DgaCgaT44AY.680.001095
ORF1ab/nsp4477D477DgaCgaT44AY.740.000463
ORF1ab/nsp4477D477DgaCgaT44B.1.10.000073
ORF1ab/nsp4477D477NGacAac44B.1.1.3170.001647
ORF1ab/nsp4477D477EgaCgaA44B.1.1.500.002716
ORF1ab/nsp4477D477DgaCgaT44B.1.2580.000266
ORF1ab/nsp4477D477DgaCgaT44C.36.30.002269
ORF1ab/nsp4477D477VgAcgTc33All0.000001
ORF1ab/nsp4477D477DgaCgaT33AY.230.000209
ORF1ab/nsp4477D477EgaCgaA33AY.30.00003
ORF1ab/nsp4477D477DgaCgaT33AY.4.20.000065
ORF1ab/nsp4477D477EgaCgaA33AY.4.50.000322
ORF1ab/nsp4477D477delGAC---33AY.430.000013
ORF1ab/nsp4477D477DgaCgaT33AY.450.000365
ORF1ab/nsp4477D477DgaCgaT33AY.530.000863
ORF1ab/nsp4477D477delGAC---33AY.750.000168
ORF1ab/nsp4477D477DgaCgaT33AY.770.003382
ORF1ab/nsp4477D477YGacTac33B.10.000027
ORF1ab/nsp4477D477NGacAac33B.1.10.000054
ORF1ab/nsp4477D477DgaCgaT33B.1.1.280.000934
ORF1ab/nsp4477D477NGacAac33B.1.1770.00004
ORF1ab/nsp4477D477DgaCgaT33B.1.177.440.001557
ORF1ab/nsp4477D477NGacAac33B.1.4290.000071
ORF1ab/nsp4477D477DgaCgaT33B.1.466.20.001174
ORF1ab/nsp4477D477DgaCgaT33B.1.617.10.000387
ORF1ab/nsp4477D477NGacAac33B.1.617.20.000011
ORF1ab/nsp4477D477DgaCgaT33P.1.100.000808
ORF1ab/nsp4477D477DgaCgaT33P.20.00056
ORF1ab/nsp4477D477YGacTac22A.10.000564
ORF1ab/nsp4477D477HGacCac22All0
ORF1ab/nsp4477D477del1gAcg-c22All0
ORF1ab/nsp4477D477DgaCgaT22AY.1000.000092
ORF1ab/nsp4477D477NGacAac22AY.1030.000012
ORF1ab/nsp4477D477DgaCgaT22AY.1100.000225
ORF1ab/nsp4477D477DgaCgaT22AY.1130.000285
ORF1ab/nsp4477D477DgaCgaT22AY.1190.000071
ORF1ab/nsp4477D477EgaCgaA22AY.120.000632
ORF1ab/nsp4477D477NGacAac22AY.230.000139
ORF1ab/nsp4477D477EgaCgaA22AY.250.000012
ORF1ab/nsp4477D477DgaCgaT22AY.290.000032
ORF1ab/nsp4477D477AgAcgCc22AY.30.00002
ORF1ab/nsp4477D477AgAcgCc22AY.330.000134
ORF1ab/nsp4477D477EgaCgaA22AY.390.000049
ORF1ab/nsp4477D477delGAC---22AY.40.000003
ORF1ab/nsp4477D477delGAC---22AY.4.50.000215
ORF1ab/nsp4477D477DgaCgaT22AY.420.00008
ORF1ab/nsp4477D477YGacTac22AY.430.000009
ORF1ab/nsp4477D477NGacAac22AY.440.000012
ORF1ab/nsp4477D477DgaCgaT22AY.460.000208
ORF1ab/nsp4477D477DgaCgaT22AY.9.10.000167
ORF1ab/nsp4477D477GgAcgGc22B.10.000018
ORF1ab/nsp4477D477EgaCgaA12B.10.000009
ORF1ab/nsp4477D477EgaCgaG12B.10.000009
ORF1ab/nsp4477D477DgaCgaT22B.1.1.1600.047619
ORF1ab/nsp4477D477EgaCgaA22B.1.1.3060.000877
ORF1ab/nsp4477D477NGacAac22B.1.1.4340.000697
ORF1ab/nsp4477D477AgAcgCc22B.1.1.5260.007092
ORF1ab/nsp4477D477EgaCgaA22B.1.1.70.000002
ORF1ab/nsp4477D477delGAC---22B.1.1770.000026
ORF1ab/nsp4477D477DgaCgaT22B.1.177.600.000437
ORF1ab/nsp4477D477DgaCgaT22B.1.351.30.001753
ORF1ab/nsp4477D477DgaCgaT22B.1.4270.000101
ORF1ab/nsp4477D477EgaCgaG22B.1.4290.000047
ORF1ab/nsp4477D477DgaCgaT22B.1.6210.000177
ORF1ab/nsp4477D477DgaCgaT22B.1.6370.000146
ORF1ab/nsp4477D477NGacAac22P.10.000032
ORF1ab/nsp4477D477delGAC---22P.10.000032
ORF1ab/nsp4477D477delGAC---22P.1.120.000968
ORF1ab/nsp4477D477DgaCgaT22Q.80.00033
ORF1ab/nsp4477D477EgaCgaA22R.10.00018
ORF1ab/nsp4477D477DgaCgaT11A0.000387
ORF1ab/nsp4477D477YGacTac11A0.000387
ORF1ab/nsp4477D477VgAcgTc11A.20.000662
ORF1ab/nsp4477D477DgaCgaT11A.210.00277
ORF1ab/nsp4477D477DgaCgaT11A.23.10.000704
ORF1ab/nsp4477D477DgaCgaT11AY.100.00053
ORF1ab/nsp4477D477DgaCgaT11AY.1010.00049
ORF1ab/nsp4477D477GgAcgGc11AY.1020.000027
ORF1ab/nsp4477D477DgaCgaT11AY.1090.00074
ORF1ab/nsp4477D477DgaCgaT11AY.1170.000085
ORF1ab/nsp4477D477AgAcgCc11AY.1180.000063
ORF1ab/nsp4477D477EgaCgaG11AY.1180.000063
ORF1ab/nsp4477D477YGacTac11AY.130.000161
ORF1ab/nsp4477D477DgaCgaT11AY.130.000161
ORF1ab/nsp4477D477DgaCgaT11AY.160.00038
ORF1ab/nsp4477D477DgaCgaT11AY.16.10.00047
ORF1ab/nsp4477D477EgaCgaG11AY.230.00007
ORF1ab/nsp4477D477AgAcgCc11AY.250.000006
ORF1ab/nsp4477D477delGAC---11AY.250.000006
ORF1ab/nsp4477D477NGacAac11AY.250.000006
ORF1ab/nsp4477D477EgaCgaA11AY.290.000016
ORF1ab/nsp4477D477del1gAcg-c11AY.30.00001
ORF1ab/nsp4477D477DgaCgaT11AY.320.000532
ORF1ab/nsp4477D477DgaCgaT11AY.380.000499
ORF1ab/nsp4477D477AgAcgCc11AY.390.000025
ORF1ab/nsp4477D477delGAC---11AY.390.000025
ORF1ab/nsp4477D477NGacAac11AY.4.20.000022
ORF1ab/nsp4477D477GgAcgGc11AY.420.00004
ORF1ab/nsp4477D477GgAcgGc11AY.440.000006
ORF1ab/nsp4477D477AgAcgCc11AY.440.000006
ORF1ab/nsp4477D477VgAcgTc11AY.440.000006
ORF1ab/nsp4477D477EgaCgaA11AY.450.000122
ORF1ab/nsp4477D477delGAC---11AY.46.20.000635
ORF1ab/nsp4477D477DgaCgaT11AY.50.000021
ORF1ab/nsp4477D477DgaCgaT11AY.510.000909
ORF1ab/nsp4477D477YGacTac11AY.520.000814
ORF1ab/nsp4477D477DgaCgaT11AY.560.001605
ORF1ab/nsp4477D477DgaCgaT11AY.570.000656
ORF1ab/nsp4477D477DgaCgaT11AY.580.000907
ORF1ab/nsp4477D477DgaCgaT11AY.590.00053
ORF1ab/nsp4477D477NGacAac11AY.60.000041
ORF1ab/nsp4477D477DgaCgaT11AY.60.000041
ORF1ab/nsp4477D477delGAC---11AY.60.000041
ORF1ab/nsp4477D477DgaCgaT11AY.650.000533
ORF1ab/nsp4477D477DgaCgaT11AY.7.10.000113
ORF1ab/nsp4477D477NGacAac11AY.750.000056
ORF1ab/nsp4477D477DgaCgaT11AY.820.001357
ORF1ab/nsp4477D477DgaCgaT11AY.850.000427
ORF1ab/nsp4477D477DgaCgaT11AY.860.00083
ORF1ab/nsp4477D477DgaCgaT11AY.90.000068
ORF1ab/nsp4477D477DgaCgaT11AY.9.2.10.001976
ORF1ab/nsp4477D477DgaCgaT11AY.980.000079
ORF1ab/nsp4477D477DgaCgaT11AY.98.10.000048
ORF1ab/nsp4477D477delGAC---11AY.99.10.001553
ORF1ab/nsp4477D477DgaCgaT11AZ.10.000867
ORF1ab/nsp4477D477YGacTac11B0.000128
ORF1ab/nsp4477D477delGAC---11B.1.10.000018
ORF1ab/nsp4477D477EgaCgaA11B.1.10.000018
ORF1ab/nsp4477D477YGacTac11B.1.10.000018
ORF1ab/nsp4477D477NGacAac11B.1.1.10.000327
ORF1ab/nsp4477D477NGacAac11B.1.1.1390.022727
ORF1ab/nsp4477D477DgaCgaT11B.1.1.1530.001095
ORF1ab/nsp4477D477DgaCgaT11B.1.1.2220.000204
ORF1ab/nsp4477D477EgaCgaA11B.1.1.2220.000204
ORF1ab/nsp4477D477NGacAac11B.1.1.2410.00207
ORF1ab/nsp4477D477DgaCgaT11B.1.1.2890.002083
ORF1ab/nsp4477D477NGacAac11B.1.1.290.010309
ORF1ab/nsp4477D477DgaCgaT11B.1.1.3170.000412
ORF1ab/nsp4477D477DgaCgaT11B.1.1.330.000421
ORF1ab/nsp4477D477DgaCgaT11B.1.1.3720.000689
ORF1ab/nsp4477D477NGacAac11B.1.1.390.00051
ORF1ab/nsp4477D477EgaCgaA11B.1.1.390.00051
ORF1ab/nsp4477D477delGAC---11B.1.1.4090.002833
ORF1ab/nsp4477D477YGacTac11B.1.1.5190.00004
ORF1ab/nsp4477D477delGAC---11B.1.1.5280.004808
ORF1ab/nsp4477D477del1gAcg-c11B.1.1.70.000001
ORF1ab/nsp4477D477YGacTac11B.1.1.70.000001
ORF1ab/nsp4477D477DgaCgaT11B.1.110.30.000718
ORF1ab/nsp4477D477DgaCgaT11B.1.1260.001276
ORF1ab/nsp4477D477NGacAac11B.1.1600.000031
ORF1ab/nsp4477D477AgAcgCc11B.1.1600.000031
ORF1ab/nsp4477D477DgaCgaT11B.1.160.160.000929
ORF1ab/nsp4477D477YGacTac11B.1.1770.000013
ORF1ab/nsp4477D477delGAC---11B.1.177.150.000631
ORF1ab/nsp4477D477DgaCgaT11B.1.177.170.000821
ORF1ab/nsp4477D477delGAC---11B.1.177.40.000211
ORF1ab/nsp4477D477DgaCgaT11B.1.177.450.000381
ORF1ab/nsp4477D477DgaCgaT11B.1.177.50.001242
ORF1ab/nsp4477D477AgAcgCc11B.1.177.580.001332
ORF1ab/nsp4477D477delGAC---11B.1.177.690.001484
ORF1ab/nsp4477D477delGAC---11B.1.177.70.000165
ORF1ab/nsp4477D477DgaCgaT11B.1.177.70.000165
ORF1ab/nsp4477D477HGacCac11B.1.177.770.000726
ORF1ab/nsp4477D477DgaCgaT11B.1.177.800.001912
ORF1ab/nsp4477D477delGAC---11B.1.177.810.000189
ORF1ab/nsp4477D477NGacAac11B.1.177.820.000477
ORF1ab/nsp4477D477DgaCgaT11B.1.177.860.000183
ORF1ab/nsp4477D477delGAC---11B.1.177.870.000728
ORF1ab/nsp4477D477delGAC---11B.1.1790.003759
ORF1ab/nsp4477D477EgaCgaA11B.1.20.000009
ORF1ab/nsp4477D477HGacCac11B.1.20.000009
ORF1ab/nsp4477D477EgaCgaA11B.1.2060.000816
ORF1ab/nsp4477D477DgaCgaT11B.1.2210.000071
ORF1ab/nsp4477D477DgaCgaT11B.1.2230.002778
ORF1ab/nsp4477D477EgaCgaA11B.1.2230.002778
ORF1ab/nsp4477D477DgaCgaT11B.1.2340.000132
ORF1ab/nsp4477D477EgaCgaA11B.1.2400.000216
ORF1ab/nsp4477D477AgAcgCc11B.1.2400.000216
ORF1ab/nsp4477D477NGacAac11B.1.2430.00007
ORF1ab/nsp4477D477DgaCgaT11B.1.2810.021739
ORF1ab/nsp4477D477YGacTac11B.1.3010.005917
ORF1ab/nsp4477D477DgaCgaT11B.1.351.50.0006
ORF1ab/nsp4477D477DgaCgaT11B.1.36.10.00114
ORF1ab/nsp4477D477delGAC---11B.1.36.180.00042
ORF1ab/nsp4477D477DgaCgaT11B.1.36.220.001208
ORF1ab/nsp4477D477AgAcgCc11B.1.3960.000706
ORF1ab/nsp4477D477DgaCgaT11B.1.4090.000781
ORF1ab/nsp4477D477AgACgCT11B.1.4970.000315
ORF1ab/nsp4477D477DgaCgaT11B.1.4970.000315
ORF1ab/nsp4477D477DgaCgaT11B.1.5250.000113
ORF1ab/nsp4477D477YGacTac11B.1.5410.004425
ORF1ab/nsp4477D477DgaCgaT11B.1.5520.015152
ORF1ab/nsp4477D477DgaCgaT11B.1.5650.00081
ORF1ab/nsp4477D477DgaCgaT11B.1.5950.000261
ORF1ab/nsp4477D477DgaCgaT11B.1.5970.00463
ORF1ab/nsp4477D477NGacAac11B.1.617.10.000129
ORF1ab/nsp4477D477YGacTac11B.1.6210.000089
ORF1ab/nsp4477D477YGacTac11B.1.6230.000536
ORF1ab/nsp4477D477NGacAac11B.30.000831
ORF1ab/nsp4477D477DgaCgaT11B.460.020833
ORF1ab/nsp4477D477DgaCgaT11B.60.00091
ORF1ab/nsp4477D477EgaCgaA11B.6.60.000889
ORF1ab/nsp4477D477DgaCgaT11B.6.60.000889
ORF1ab/nsp4477D477GgACgGT11C.350.000774
ORF1ab/nsp4477D477YGacTac11D.20.000075
ORF1ab/nsp4477D477DgaCgaT11D.20.000075
ORF1ab/nsp4477D477AgAcgCc11P.1.10.000318
ORF1ab/nsp4477D477VgAcgTc11P.1.10.000318
ORF1ab/nsp4477D477DgaCgaT11P.1.170.000162
ORF1ab/nsp4477D477DgaCgaT11P.1.70.000319
ORF1ab/nsp4477D477NGacAac11P.20.000187
ORF1ab/nsp4477D477DgaCgaT11Q.10.000126
ORF1ab/nsp4477D477EgaCgaA11Q.80.000165