CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 471

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4471L471LL3234LsynctCctT969396070.9911289965-9967
ORF1ab/nsp4471L471LL3234LsynctCctA9693830.008562889965-9967
ORF1ab/nsp4471L471LL3234LsynctCctG969320.0002063349965-9967
ORF1ab/nsp4471L471LL3234LsynCtCTtG969310.0001031679965-9967
ORF1ab/nsp4471L471delL3234deldelCTC---747419965-9967
ORF1ab/nsp4471L471FL3234FnonsynCtcTtc101019965-9967
ORF1ab/nsp4471L471del1L3234del1delCtc-tc640.6666679965-9967
ORF1ab/nsp4471L471del1L3234del1delctCct-610.1666679965-9967
ORF1ab/nsp4471L471del1L3234del1delcTcc-c610.1666679965-9967
ORF1ab/nsp4471L471PL3234PnonsyncTccCc5519965-9967
ORF1ab/nsp4471L471IL3234InonsynCtcAtc3319965-9967
ORF1ab/nsp4471L471AL3234AnonsynCTCGCT3319965-9967
ORF1ab/nsp4471L471VL3234VnonsynCtCGtA2219965-9967
ORF1ab/nsp4471L471RL3234RnonsyncTccGc1119965-9967
ORF1ab/nsp4471L471TL3234TnonsynCTcACc1119965-9967

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4471L471LctCctT96079693All0.001837
ORF1ab/nsp4471L471LctCctA839693All0.000016
ORF1ab/nsp4471L471LctCctG29693All0
ORF1ab/nsp4471L471LCtCTtG19693All0
ORF1ab/nsp4471L471LctCctT16951705B.1.1.70.001517
ORF1ab/nsp4471L471LctCctA101705B.1.1.70.000009
ORF1ab/nsp4471L471LctCctT802802B.1.617.20.00302
ORF1ab/nsp4471L471LctCctT734734B.1.4270.037065
ORF1ab/nsp4471L471LctCctT620622AY.40.000965
ORF1ab/nsp4471L471LctCctA2622AY.40.000003
ORF1ab/nsp4471L471LctCctT405408B.1.10.007347
ORF1ab/nsp4471L471LctCctA2408B.1.10.000036
ORF1ab/nsp4471L471LctCctG1408B.1.10.000018
ORF1ab/nsp4471L471LctCctT400404B.10.003664
ORF1ab/nsp4471L471LctCctA4404B.10.000037
ORF1ab/nsp4471L471LctCctT397399AY.430.001759
ORF1ab/nsp4471L471LctCctA2399AY.430.000009
ORF1ab/nsp4471L471LctCctT391391B.1.3360.953659
ORF1ab/nsp4471L471LctCctT317317AY.250.001907
ORF1ab/nsp4471L471LctCctT194195AY.440.001181
ORF1ab/nsp4471L471LctCctA1195AY.440.000006
ORF1ab/nsp4471L471LctCctT184184B.1.1770.002423
ORF1ab/nsp4471L471LctCctT182182B.1.20.001603
ORF1ab/nsp4471L471LctCctT178178AY.420.007161
ORF1ab/nsp4471L471LctCctT173177AY.30.001721
ORF1ab/nsp4471L471LctCctA4177AY.30.00004
ORF1ab/nsp4471L471LctCctT170170AY.1200.00632
ORF1ab/nsp4471L471LctCctT151152AY.1030.000938
ORF1ab/nsp4471L471LctCctA1152AY.1030.000006
ORF1ab/nsp4471L471LctCctT144144AY.930.039323
ORF1ab/nsp4471L471LctCctT128131B.1.4290.003012
ORF1ab/nsp4471L471LctCctA3131B.1.4290.000071
ORF1ab/nsp4471L471LctCctT122122B.1.438.10.013086
ORF1ab/nsp4471L471LctCctT9696P.10.001512
ORF1ab/nsp4471L471LctCctT7676B.1.3490.054325
ORF1ab/nsp4471L471delCTC---7474All0.000014
ORF1ab/nsp4471L471LctCctT7070B.1.5260.001645
ORF1ab/nsp4471L471LctCctT6969Q.30.010007
ORF1ab/nsp4471L471LctCctT6767AY.1020.001776
ORF1ab/nsp4471L471LctCctT6262B.1.177.810.011738
ORF1ab/nsp4471L471LctCctT6060B.1.1.3361
ORF1ab/nsp4471L471LctCctT5657B.1.1600.001747
ORF1ab/nsp4471L471LctCctA157B.1.1600.000031
ORF1ab/nsp4471L471LctCctT5454B.1.3510.001605
ORF1ab/nsp4471L471LctCctT5151AY.1000.002346
ORF1ab/nsp4471L471LctCctT4444AY.390.001087
ORF1ab/nsp4471L471LctCctT4141AY.260.001161
ORF1ab/nsp4471L471LctCctT4141AY.470.001275
ORF1ab/nsp4471L471LctCctT3838AY.4.20.000824
ORF1ab/nsp4471L471LctCctT3838AY.50.000785
ORF1ab/nsp4471L471LctCctA3536P.1.70.011175
ORF1ab/nsp4471L471LctCctT136P.1.70.000319
ORF1ab/nsp4471L471LctCctT3333AY.1190.001165
ORF1ab/nsp4471L471LctCctT3131AY.230.002162
ORF1ab/nsp4471L471LctCctT3030B.1.177.600.006553
ORF1ab/nsp4471L471LctCctT1830B.1.5960.001568
ORF1ab/nsp4471L471LctCctA1230B.1.5960.001046
ORF1ab/nsp4471L471LctCctT2929B.1.1.1191
ORF1ab/nsp4471L471LctCctT2929B.1.1.3581
ORF1ab/nsp4471L471LctCctT2929B.1.258.30.048576
ORF1ab/nsp4471L471LctCctT2828AY.980.002212
ORF1ab/nsp4471L471delCTC---2727B.1.1.70.000024
ORF1ab/nsp4471L471LctCctT2626AY.1130.003702
ORF1ab/nsp4471L471LctCctT2626B.1.177.570.007305
ORF1ab/nsp4471L471LctCctT2525B.1.1.5190.000993
ORF1ab/nsp4471L471LctCctT2425B.1.617.10.003095
ORF1ab/nsp4471L471LCtCTtG125B.1.617.10.000129
ORF1ab/nsp4471L471LctCctT2424B.1.5750.007282
ORF1ab/nsp4471L471LctCctT2323B.1.5300.164286
ORF1ab/nsp4471L471LctCctT2222AY.1160.006309
ORF1ab/nsp4471L471LctCctT2121B.1.1.2220.004284
ORF1ab/nsp4471L471LctCctT2020AY.9.20.000735
ORF1ab/nsp4471L471LctCctT1919AY.1060.006363
ORF1ab/nsp4471L471LctCctT1919AY.1210.002571
ORF1ab/nsp4471L471LctCctT1919AY.200.000738
ORF1ab/nsp4471L471LctCctT1919B.1.1.2800.058642
ORF1ab/nsp4471L471LctCctT1818B.1.177.770.013072
ORF1ab/nsp4471L471LctCctT1717AY.46.10.017454
ORF1ab/nsp4471L471LctCctT1616AY.460.001665
ORF1ab/nsp4471L471LctCctT1516B0.001917
ORF1ab/nsp4471L471LctCctA116B0.000128
ORF1ab/nsp4471L471LctCctT1616B.1.177.440.008303
ORF1ab/nsp4471L471LctCctT1516B.1.258.170.00156
ORF1ab/nsp4471L471LctCctA116B.1.258.170.000104
ORF1ab/nsp4471L471LctCctT1515AY.330.001002
ORF1ab/nsp4471L471LctCctT1515AY.830.025862
ORF1ab/nsp4471L471LctCctT1515B.1.6370.001096
ORF1ab/nsp4471L471LctCctT1515R.10.00135
ORF1ab/nsp4471L471LctCctT1212AY.290.000189
ORF1ab/nsp4471L471LctCctT1212B.1.6210.001062
ORF1ab/nsp4471L471LctCctT1212P.1.140.000574
ORF1ab/nsp4471L471LctCctT1111AY.340.001067
ORF1ab/nsp4471L471LctCctT1111AY.39.10.000436
ORF1ab/nsp4471L471LctCctT1111B.1.5250.001245
ORF1ab/nsp4471L471LctCctT1111B.1.5660.211538
ORF1ab/nsp4471L471LctCctT1111Q.10.00139
ORF1ab/nsp4471L471FCtcTtc1010All0.000002
ORF1ab/nsp4471L471LctCctT1010AY.60.000411
ORF1ab/nsp4471L471LctCctT99AY.4.30.007576
ORF1ab/nsp4471L471LctCctT99AY.840.003937
ORF1ab/nsp4471L471LctCctT89AY.98.10.000387
ORF1ab/nsp4471L471LctCctG19AY.98.10.000048
ORF1ab/nsp4471L471LctCctT99B.1.1.3470.163636
ORF1ab/nsp4471L471LctCctT99B.1.2060.007341
ORF1ab/nsp4471L471LctCctT88AY.270.000518
ORF1ab/nsp4471L471LctCctT88AY.450.000973
ORF1ab/nsp4471L471LctCctT88B.1.1.2140.000444
ORF1ab/nsp4471L471LctCctT88B.1.1.3170.003294
ORF1ab/nsp4471L471LctCctT88B.1.2580.000532
ORF1ab/nsp4471L471LctCctT77AY.46.40.001152
ORF1ab/nsp4471L471LctCctT77AY.46.60.000505
ORF1ab/nsp4471L471LctCctT77B.1.2210.000497
ORF1ab/nsp4471L471LctCctT77B.1.2430.000487
ORF1ab/nsp4471L471LctCctT77B.1.2930.0875
ORF1ab/nsp4471L471LctCctT77B.1.36.10.007982
ORF1ab/nsp4471L471del1Ctc-tc46All0.000001
ORF1ab/nsp4471L471del1ctCct-16All0
ORF1ab/nsp4471L471del1cTcc-c16All0
ORF1ab/nsp4471L471LctCctT66AY.130.000966
ORF1ab/nsp4471L471LctCctT66AY.160.002278
ORF1ab/nsp4471L471LctCctT66AY.360.000889
ORF1ab/nsp4471L471LctCctT66AY.4.50.000645
ORF1ab/nsp4471L471delCTC---66B.10.000055
ORF1ab/nsp4471L471LctCctT66B.1.351.20.001815
ORF1ab/nsp4471L471LctCctT66B.1.360.000875
ORF1ab/nsp4471L471LctCctT66C.370.000696
ORF1ab/nsp4471L471LctCctT66P.1.150.001394
ORF1ab/nsp4471L471LctCctT66P.20.00112
ORF1ab/nsp4471L471LctCctT66Q.80.000989
ORF1ab/nsp4471L471LctCctT66V.10.136364
ORF1ab/nsp4471L471LctCctT66W.40.008108
ORF1ab/nsp4471L471PcTccCc55All0.000001
ORF1ab/nsp4471L471LctCctT55AY.1170.000423
ORF1ab/nsp4471L471LctCctT55AY.1180.000313
ORF1ab/nsp4471L471LctCctT55AY.140.00044
ORF1ab/nsp4471L471LctCctT55AY.300.001979
ORF1ab/nsp4471L471LctCctT55AY.670.002321
ORF1ab/nsp4471L471LctCctT55AY.790.006053
ORF1ab/nsp4471L471LctCctT55B.1.1.1860.017182
ORF1ab/nsp4471L471LctCctT55B.1.1.3350.064935
ORF1ab/nsp4471L471LctCctT55B.1.177.730.002831
ORF1ab/nsp4471L471LctCctT55B.1.177.850.027174
ORF1ab/nsp4471L471LctCctT55B.1.4590.020408
ORF1ab/nsp4471L471LctCctT55B.1.5880.00455
ORF1ab/nsp4471L471LctCctT55C.160.005302
ORF1ab/nsp4471L471LctCctT55D.20.000375
ORF1ab/nsp4471L471delCTC---44AY.40.000006
ORF1ab/nsp4471L471LctCctT44AY.610.000419
ORF1ab/nsp4471L471LctCctT44AY.620.001743
ORF1ab/nsp4471L471LctCctT44AY.750.000224
ORF1ab/nsp4471L471LctCctT44B.1.1.2160.003562
ORF1ab/nsp4471L471LctCctT44B.1.1.280.001245
ORF1ab/nsp4471L471LctCctT44B.1.1.3550.061538
ORF1ab/nsp4471L471LctCctT44B.1.1.3820.142857
ORF1ab/nsp4471L471LctCctT44B.1.1.500.002716
ORF1ab/nsp4471L471LctCctT44B.1.1.540.012085
ORF1ab/nsp4471L471LctCctT44B.1.160.260.009685
ORF1ab/nsp4471L471delCTC---44B.1.1770.000053
ORF1ab/nsp4471L471LctCctT44B.1.177.120.000607
ORF1ab/nsp4471L471LctCctT44B.1.177.320.005398
ORF1ab/nsp4471L471LctCctT44B.1.3110.001098
ORF1ab/nsp4471L471LctCctT44B.1.6090.001918
ORF1ab/nsp4471L471LctCctT44B.1.617.30.01194
ORF1ab/nsp4471L471LctCctT44B.1.6280.001409
ORF1ab/nsp4471L471LctCctT23A.20.001324
ORF1ab/nsp4471L471LctCctA13A.20.000662
ORF1ab/nsp4471L471ICtcAtc33All0.000001
ORF1ab/nsp4471L471ACTCGCT33All0.000001
ORF1ab/nsp4471L471LctCctT33AY.16.10.00141
ORF1ab/nsp4471L471LctCctT23AY.3.10.000171
ORF1ab/nsp4471L471LctCctA13AY.3.10.000085
ORF1ab/nsp4471L471delCTC---33AY.430.000013
ORF1ab/nsp4471L471LctCctT33AY.5.40.00083
ORF1ab/nsp4471L471delCTC---33AY.750.000168
ORF1ab/nsp4471L471LctCctT33AY.850.001282
ORF1ab/nsp4471L471LctCctT33AY.90.000203
ORF1ab/nsp4471L471FCtcTtc33B.10.000027
ORF1ab/nsp4471L471LctCctT33B.1.1.250.001706
ORF1ab/nsp4471L471LctCctT33B.1.1.3030.008287
ORF1ab/nsp4471L471LctCctT33B.1.1.3060.001315
ORF1ab/nsp4471L471LctCctT33B.1.1.330.001263
ORF1ab/nsp4471L471LctCctT33B.1.1.5230.004687
ORF1ab/nsp4471L471LctCctT33B.1.1.630.001157
ORF1ab/nsp4471L471LctCctT33B.1.2340.000396
ORF1ab/nsp4471L471LctCctT33B.1.36.180.001261
ORF1ab/nsp4471L471LctCctT33B.1.36.250.006623
ORF1ab/nsp4471L471LctCctT33B.1.36.290.001552
ORF1ab/nsp4471L471LctCctT33B.1.3690.000856
ORF1ab/nsp4471L471LctCctT33B.1.390.011719
ORF1ab/nsp4471L471LctCctT33B.1.4970.000944
ORF1ab/nsp4471L471LctCctT33B.1.5640.001278
ORF1ab/nsp4471L471LctCctT33B.400.001093
ORF1ab/nsp4471L471LctCctT33B.60.00273
ORF1ab/nsp4471L471LctCctT33C.230.017442
ORF1ab/nsp4471L471LctCctT33C.360.002732
ORF1ab/nsp4471L471LctCctT33P.1.40.00293
ORF1ab/nsp4471L471VCtCGtA22All0
ORF1ab/nsp4471L471LctCctT22AY.1080.002205
ORF1ab/nsp4471L471LctCctT22AY.1110.000366
ORF1ab/nsp4471L471LctCctT22AY.120.000632
ORF1ab/nsp4471L471delCTC---22AY.4.50.000215
ORF1ab/nsp4471L471LctCctT22AY.550.001835
ORF1ab/nsp4471L471LctCctT22AY.590.001059
ORF1ab/nsp4471L471LctCctT22AY.660.002139
ORF1ab/nsp4471L471LctCctT22AY.730.001331
ORF1ab/nsp4471L471LctCctT22AY.75.10.000361
ORF1ab/nsp4471L471LctCctT22AY.880.001768
ORF1ab/nsp4471L471LctCctT22AY.890.009804
ORF1ab/nsp4471L471LctCctT22AY.9.10.000167
ORF1ab/nsp4471L471LctCctT22AY.920.000575
ORF1ab/nsp4471L471LctCctT22AZ.20.001642
ORF1ab/nsp4471L471PcTccCc22B.10.000018
ORF1ab/nsp4471L471del1Ctc-tc22B.10.000018
ORF1ab/nsp4471L471ACTCGCT22B.1.10.000036
ORF1ab/nsp4471L471LctCctT22B.1.1.10.000653
ORF1ab/nsp4471L471LctCctT22B.1.1.2940.002532
ORF1ab/nsp4471L471LctCctT22B.1.1.3260.003521
ORF1ab/nsp4471L471LctCctT22B.1.1.4340.000697
ORF1ab/nsp4471L471LctCctT22B.1.1.4640.002946
ORF1ab/nsp4471L471del1Ctc-tc22B.1.1.70.000002
ORF1ab/nsp4471L471LctCctT22B.1.1.700.000682
ORF1ab/nsp4471L471LctCctT22B.1.1.80.007168
ORF1ab/nsp4471L471LctCctT22B.1.1110.00235
ORF1ab/nsp4471L471LctCctT22B.1.120.016
ORF1ab/nsp4471L471LctCctT22B.1.1390.001466
ORF1ab/nsp4471L471LctCctT22B.1.177.560.001335
ORF1ab/nsp4471L471LctCctT22B.1.2400.000431
ORF1ab/nsp4471L471LctCctT22B.1.2410.001623
ORF1ab/nsp4471L471LctCctT22B.1.3560.003454
ORF1ab/nsp4471L471LctCctT22B.1.36.170.000988
ORF1ab/nsp4471L471LctCctT22B.1.4620.014493
ORF1ab/nsp4471L471LctCctT22B.1.466.20.000782
ORF1ab/nsp4471L471LctCctT22B.1.5240.002813
ORF1ab/nsp4471L471LctCctT22B.1.5650.001621
ORF1ab/nsp4471L471LctCctT22B.1.575.10.004878
ORF1ab/nsp4471L471LctCctT22B.1.5800.00813
ORF1ab/nsp4471L471LctCctT22B.230.005848
ORF1ab/nsp4471L471LctCctT22B.3.10.003317
ORF1ab/nsp4471L471LctCctT22B.40.004415
ORF1ab/nsp4471L471LctCctT22C.120.014388
ORF1ab/nsp4471L471delCTC---22P.10.000032
ORF1ab/nsp4471L471LctCctT22P.1.10.000635
ORF1ab/nsp4471L471LctCctT22P.1.100.000539
ORF1ab/nsp4471L471delCTC---22P.1.120.000968
ORF1ab/nsp4471L471LctCctT11A.2.50.000499
ORF1ab/nsp4471L471LctCctT11A.23.10.000704
ORF1ab/nsp4471L471LctCctT11AD.10.004115
ORF1ab/nsp4471L471LctCctT11AD.20.000219
ORF1ab/nsp4471L471TCTcACc11All0
ORF1ab/nsp4471L471RcTccGc11All0
ORF1ab/nsp4471L471LctCctT11AU.10.001266
ORF1ab/nsp4471L471LctCctT11AY.10.000396
ORF1ab/nsp4471L471LctCctT11AY.100.00053
ORF1ab/nsp4471L471LctCctT11AY.1010.00049
ORF1ab/nsp4471L471FCtcTtc11AY.1030.000006
ORF1ab/nsp4471L471LctCctT11AY.1040.001984
ORF1ab/nsp4471L471LctCctT11AY.1070.000466
ORF1ab/nsp4471L471LctCctT11AY.1100.000113
ORF1ab/nsp4471L471del1cTcc-c11AY.1190.000035
ORF1ab/nsp4471L471del1ctCct-11AY.120.10.000321
ORF1ab/nsp4471L471LctCctT11AY.120.2.10.000498
ORF1ab/nsp4471L471LctCctT11AY.190.00114
ORF1ab/nsp4471L471LctCctT11AY.20.000356
ORF1ab/nsp4471L471FCtcTtc11AY.210.001898
ORF1ab/nsp4471L471delCTC---11AY.250.000006
ORF1ab/nsp4471L471LctCctA11AY.320.000532
ORF1ab/nsp4471L471LctCctT11AY.34.10.00051
ORF1ab/nsp4471L471LctCctT11AY.370.000316
ORF1ab/nsp4471L471VCtCGtA11AY.390.000025
ORF1ab/nsp4471L471delCTC---11AY.390.000025
ORF1ab/nsp4471L471ICtcAtc11AY.40.000002
ORF1ab/nsp4471L471LctCctT11AY.4.2.10.000149
ORF1ab/nsp4471L471TCTcACc11AY.440.000006
ORF1ab/nsp4471L471delCTC---11AY.46.20.000635
ORF1ab/nsp4471L471LctCctT11AY.46.20.000635
ORF1ab/nsp4471L471LctCctT11AY.5.30.000337
ORF1ab/nsp4471L471PcTccCc11AY.510.000909
ORF1ab/nsp4471L471LctCctT11AY.520.000814
ORF1ab/nsp4471L471LctCctT11AY.540.000095
ORF1ab/nsp4471L471LctCctT11AY.580.000907
ORF1ab/nsp4471L471delCTC---11AY.60.000041
ORF1ab/nsp4471L471LctCctT11AY.680.000274
ORF1ab/nsp4471L471LctCctT11AY.690.000187
ORF1ab/nsp4471L471LctCctT11AY.7.10.000113
ORF1ab/nsp4471L471LctCctT11AY.710.000475
ORF1ab/nsp4471L471LctCctT11AY.770.001127
ORF1ab/nsp4471L471LctCctT11AY.820.001357
ORF1ab/nsp4471L471LctCctT11AY.910.00073
ORF1ab/nsp4471L471LctCctT11AY.99.10.001553
ORF1ab/nsp4471L471delCTC---11AY.99.10.001553
ORF1ab/nsp4471L471LctCctT11AY.99.20.000092
ORF1ab/nsp4471L471LctCctT11AZ.10.000867
ORF1ab/nsp4471L471LctCctT11AZ.30.00152
ORF1ab/nsp4471L471ICtcAtc11B.10.000009
ORF1ab/nsp4471L471ICtcAtc11B.1.10.000018
ORF1ab/nsp4471L471FCtcTtc11B.1.10.000018
ORF1ab/nsp4471L471LctCctT11B.1.1.1210.002427
ORF1ab/nsp4471L471delCTC---11B.1.1.1390.022727
ORF1ab/nsp4471L471LctCctT11B.1.1.2040.00304
ORF1ab/nsp4471L471delCTC---11B.1.1.2360.006897
ORF1ab/nsp4471L471LctCctT11B.1.1.2400.004695
ORF1ab/nsp4471L471LctCctT11B.1.1.2430.004082
ORF1ab/nsp4471L471LctCctT11B.1.1.2840.000107
ORF1ab/nsp4471L471delCTC---11B.1.1.3110.000358
ORF1ab/nsp4471L471LctCctT11B.1.1.3160.000925
ORF1ab/nsp4471L471LctCctT11B.1.1.3180.000302
ORF1ab/nsp4471L471LctCctT11B.1.1.3330.001076
ORF1ab/nsp4471L471LctCctT11B.1.1.3480.000796
ORF1ab/nsp4471L471LctCctT11B.1.1.3690.000446
ORF1ab/nsp4471L471LctCctT11B.1.1.370.000193
ORF1ab/nsp4471L471LctCctT11B.1.1.3780.007299
ORF1ab/nsp4471L471LctCctT11B.1.1.3980.003226
ORF1ab/nsp4471L471LctCctT11B.1.1.4090.002833
ORF1ab/nsp4471L471delCTC---11B.1.1.4090.002833
ORF1ab/nsp4471L471LctCctT11B.1.1.4130.006897
ORF1ab/nsp4471L471LctCctT11B.1.1.4200.001006
ORF1ab/nsp4471L471LctCctT11B.1.1.510.001718
ORF1ab/nsp4471L471LctCctT11B.1.1.5170.006803
ORF1ab/nsp4471L471delCTC---11B.1.1.5280.004808
ORF1ab/nsp4471L471FCtcTtc11B.1.1.70.000001
ORF1ab/nsp4471L471VCtCGtA11B.1.1.70.000001
ORF1ab/nsp4471L471LctCctT11B.1.177.150.000631
ORF1ab/nsp4471L471delCTC---11B.1.177.150.000631
ORF1ab/nsp4471L471LctCctT11B.1.177.170.000821
ORF1ab/nsp4471L471delCTC---11B.1.177.180.00116
ORF1ab/nsp4471L471LctCctT11B.1.177.180.00116
ORF1ab/nsp4471L471LctCctT11B.1.177.40.000211
ORF1ab/nsp4471L471delCTC---11B.1.177.40.000211
ORF1ab/nsp4471L471delCTC---11B.1.177.540.000606
ORF1ab/nsp4471L471LctCctT11B.1.177.650.000665
ORF1ab/nsp4471L471delCTC---11B.1.177.690.001484
ORF1ab/nsp4471L471delCTC---11B.1.177.70.000165
ORF1ab/nsp4471L471delCTC---11B.1.177.810.000189
ORF1ab/nsp4471L471delCTC---11B.1.177.870.000728
ORF1ab/nsp4471L471delCTC---11B.1.1790.003759
ORF1ab/nsp4471L471LctCctT11B.1.1890.004292
ORF1ab/nsp4471L471LctCctT11B.1.1950.005025
ORF1ab/nsp4471L471PcTccCc11B.1.20.000009
ORF1ab/nsp4471L471LctCctT11B.1.220.001318
ORF1ab/nsp4471L471LctCctT11B.1.258.110.000396
ORF1ab/nsp4471L471LctCctT11B.1.258.210.007752
ORF1ab/nsp4471L471LctCctT11B.1.3240.001605
ORF1ab/nsp4471L471LctCctT11B.1.3320.003497
ORF1ab/nsp4471L471LctCctT11B.1.3340.018182
ORF1ab/nsp4471L471LctCctT11B.1.3400.004292
ORF1ab/nsp4471L471LctCctT11B.1.351.50.0006
ORF1ab/nsp4471L471delCTC---11B.1.36.180.00042
ORF1ab/nsp4471L471LctCctT11B.1.36.210.00216
ORF1ab/nsp4471L471LctCctT11B.1.36.80.001
ORF1ab/nsp4471L471RcTccGc11B.1.3620.001541
ORF1ab/nsp4471L471LctCctT11B.1.3750.00082
ORF1ab/nsp4471L471LctCctT11B.1.3990.001934
ORF1ab/nsp4471L471LctCctT11B.1.400.019608
ORF1ab/nsp4471L471LctCctT11B.1.4430.004673
ORF1ab/nsp4471L471LctCctT11B.1.4530.003236
ORF1ab/nsp4471L471LctCctT11B.1.4690.00361
ORF1ab/nsp4471L471LctCctT11B.1.4700.001404
ORF1ab/nsp4471L471LctCctT11B.1.5170.000427
ORF1ab/nsp4471L471LctCctT11B.1.5270.003704
ORF1ab/nsp4471L471PcTccCc11B.1.5440.006024
ORF1ab/nsp4471L471LctCctT11B.1.5460.003704
ORF1ab/nsp4471L471LctCctT11B.1.5670.003333
ORF1ab/nsp4471L471LctCctT11B.1.5680.001111
ORF1ab/nsp4471L471LctCctT11B.1.5740.002151
ORF1ab/nsp4471L471LctCctT11B.1.5760.000907
ORF1ab/nsp4471L471LctCctT11B.1.5770.000687
ORF1ab/nsp4471L471LctCctT11B.1.5820.000491
ORF1ab/nsp4471L471LctCctT11B.1.5950.000261
ORF1ab/nsp4471L471FCtcTtc11B.1.5960.000087
ORF1ab/nsp4471L471LctCctT11B.1.619.10.000641
ORF1ab/nsp4471L471LctCctA11B.1.6230.000536
ORF1ab/nsp4471L471LctCctT11B.1.80.001972
ORF1ab/nsp4471L471LctCctT11B.1.9.40.006135
ORF1ab/nsp4471L471LctCctT11B.1.940.027027
ORF1ab/nsp4471L471LctCctT11B.6.80.008264
ORF1ab/nsp4471L471LctCctT11C.10.002392
ORF1ab/nsp4471L471LctCctT11C.140.004329
ORF1ab/nsp4471L471delCTC---11C.350.000774
ORF1ab/nsp4471L471LctCctT11C.390.018868
ORF1ab/nsp4471L471FCtcTtc11D.20.000075
ORF1ab/nsp4471L471LctCctT11L.10.001905
ORF1ab/nsp4471L471FCtcTtc11P.10.000016
ORF1ab/nsp4471L471ACTCGCT11P.10.000016
ORF1ab/nsp4471L471LctCctT11P.1.120.000484
ORF1ab/nsp4471L471LctCctT11P.1.170.000162
ORF1ab/nsp4471L471LctCctT11P.30.001595
ORF1ab/nsp4471L471LctCctT11Q.40.000455
ORF1ab/nsp4471L471LctCctT11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.