CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 461

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4461T461NT3224NnonsynaCtaAt102610250.9990259935-9937
ORF1ab/nsp4461T461NT3224NnonsynaCTaAC102610.0009746599935-9937
ORF1ab/nsp4461T461AT3224AnonsynActGct7797780.9987169935-9937
ORF1ab/nsp4461T461AT3224AnonsynAcTGcA77910.00128379935-9937
ORF1ab/nsp4461T461IT3224InonsynaCtaTt52452419935-9937
ORF1ab/nsp4461T461delT3224deldelACT---13013019935-9937
ORF1ab/nsp4461T461TT3224TsynacTacC104940.9038469935-9937
ORF1ab/nsp4461T461TT3224TsynacTacA10490.08653859935-9937
ORF1ab/nsp4461T461TT3224TsynacTacG10410.009615389935-9937
ORF1ab/nsp4461T461PT3224PnonsynActCct101019935-9937
ORF1ab/nsp4461T461ST3224SnonsynaCtaGt320.6666679935-9937
ORF1ab/nsp4461T461ST3224SnonsynaCTaGC310.3333339935-9937
ORF1ab/nsp4461T461del1T3224del1delacTac-2219935-9937
ORF1ab/nsp4461T461del2T3224del2delACt--t1119935-9937
ORF1ab/nsp4461T461MT3224MnonsynaCTaTG1119935-9937

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4461T461NaCtaAt10251026All0.000196
ORF1ab/nsp4461T461NaCTaAC11026All0
ORF1ab/nsp4461T461AActGct778779All0.000149
ORF1ab/nsp4461T461AAcTGcA1779All0
ORF1ab/nsp4461T461IaCtaTt524524All0.0001
ORF1ab/nsp4461T461NaCtaAt442442B.1.36.390.980044
ORF1ab/nsp4461T461NaCtaAt161161AY.1020.004269
ORF1ab/nsp4461T461NaCtaAt141141AY.440.000858
ORF1ab/nsp4461T461delACT---130130All0.000025
ORF1ab/nsp4461T461IaCtaTt111111AY.39.10.004397
ORF1ab/nsp4461T461TacTacC94104All0.000018
ORF1ab/nsp4461T461TacTacA9104All0.000002
ORF1ab/nsp4461T461TacTacG1104All0
ORF1ab/nsp4461T461AActGct100100B.1.1.70.00009
ORF1ab/nsp4461T461IaCtaTt8080B.10.000733
ORF1ab/nsp4461T461AActGct7575B.1.617.20.000282
ORF1ab/nsp4461T461NaCtaAt6666B.1.617.20.000249
ORF1ab/nsp4461T461IaCtaTt6262AY.40.000096
ORF1ab/nsp4461T461AActGct5151AY.440.00031
ORF1ab/nsp4461T461IaCtaTt4545P.10.000709
ORF1ab/nsp4461T461AActGct4141B.1.1.5190.001628
ORF1ab/nsp4461T461NaCtaAt4040AY.1200.001487
ORF1ab/nsp4461T461delACT---3838B.1.1.70.000034
ORF1ab/nsp4461T461AActGct3737B.1.1770.000487
ORF1ab/nsp4461T461AActGct3535AY.430.000155
ORF1ab/nsp4461T461AActGct2929AY.40.000045
ORF1ab/nsp4461T461AActGct2929B.1.4290.000682
ORF1ab/nsp4461T461IaCtaTt2626B.1.1.70.000023
ORF1ab/nsp4461T461IaCtaTt2525AY.390.000618
ORF1ab/nsp4461T461TacTacC2424AY.40.000037
ORF1ab/nsp4461T461AActGct2323AY.3.10.001961
ORF1ab/nsp4461T461IaCtaTt2323B.1.1.5190.000913
ORF1ab/nsp4461T461AActGct2020B.1.2340.002639
ORF1ab/nsp4461T461AActGct1919B.1.4330.060703
ORF1ab/nsp4461T461TacTacC1818B.1.3510.000535
ORF1ab/nsp4461T461AActGct1717AY.1030.000106
ORF1ab/nsp4461T461NaCtaAt1717B.1.1.70.000015
ORF1ab/nsp4461T461AActGct1717B.1.160.260.041162
ORF1ab/nsp4461T461AActGct1717P.10.000268
ORF1ab/nsp4461T461NaCtaAt1515AY.430.000066
ORF1ab/nsp4461T461AActGct1515B.1.1600.000468
ORF1ab/nsp4461T461AActGct1414B.10.000128
ORF1ab/nsp4461T461NaCtaAt1414B.1.1.5190.000556
ORF1ab/nsp4461T461AActGct1313AY.30.000129
ORF1ab/nsp4461T461NaCtaAt1212AY.1030.000075
ORF1ab/nsp4461T461IaCtaTt1212B.1.10.000218
ORF1ab/nsp4461T461IaCtaTt1212B.1.110.30.008621
ORF1ab/nsp4461T461AActGct1112B.1.20.000097
ORF1ab/nsp4461T461AAcTGcA112B.1.20.000009
ORF1ab/nsp4461T461AActGct1212B.1.2580.000799
ORF1ab/nsp4461T461AActGct1111AY.9.20.000404
ORF1ab/nsp4461T461IaCtaTt1111B.1.617.20.000041
ORF1ab/nsp4461T461PActCct1010All0.000002
ORF1ab/nsp4461T461IaCtaTt1010AY.1030.000062
ORF1ab/nsp4461T461TacTacC1010B.1.1.5190.000397
ORF1ab/nsp4461T461AActGct1010B.1.3110.002746
ORF1ab/nsp4461T461IaCtaTt99AY.30.00009
ORF1ab/nsp4461T461NaCtaAt99AY.40.000014
ORF1ab/nsp4461T461IaCtaTt99AY.440.000055
ORF1ab/nsp4461T461AActGct99AY.50.000186
ORF1ab/nsp4461T461NaCtaAt99AY.910.006574
ORF1ab/nsp4461T461delACT---99B.10.000082
ORF1ab/nsp4461T461NaCtaAt99B.1.20.000079
ORF1ab/nsp4461T461AActGct99C.36.30.005105
ORF1ab/nsp4461T461IaCtaTt88AY.250.000048
ORF1ab/nsp4461T461NaCtaAt88AY.390.000198
ORF1ab/nsp4461T461AActGct88AY.540.000763
ORF1ab/nsp4461T461TacTacC88B.1.5260.000188
ORF1ab/nsp4461T461TacTacA48B.1.617.20.000015
ORF1ab/nsp4461T461TacTacC48B.1.617.20.000015
ORF1ab/nsp4461T461AActGct88B.1.6370.000585
ORF1ab/nsp4461T461AActGct77AY.1020.000186
ORF1ab/nsp4461T461IaCtaTt77AY.1020.000186
ORF1ab/nsp4461T461AActGct77AY.250.000042
ORF1ab/nsp4461T461NaCtaAt77AY.50.000145
ORF1ab/nsp4461T461IaCtaTt77B.1.1770.000092
ORF1ab/nsp4461T461AActGct66AY.290.000095
ORF1ab/nsp4461T461NaCtaAt66AY.460.000624
ORF1ab/nsp4461T461delACT---66AY.750.000336
ORF1ab/nsp4461T461NaCtaAt66B.1.36.170.002964
ORF1ab/nsp4461T461delACT---55AY.4.50.000537
ORF1ab/nsp4461T461NaCtaAt55AY.420.000201
ORF1ab/nsp4461T461IaCtaTt55AY.430.000022
ORF1ab/nsp4461T461NaCtaAt55AY.920.001436
ORF1ab/nsp4461T461NaCtaAt55B.1.10.000091
ORF1ab/nsp4461T461AActGct55B.1.1.2070.00591
ORF1ab/nsp4461T461delACT---55B.1.1770.000066
ORF1ab/nsp4461T461AActGct55B.1.360.00073
ORF1ab/nsp4461T461AActGct55B.1.438.10.000536
ORF1ab/nsp4461T461AActGct55B.1.5260.000118
ORF1ab/nsp4461T461delACT---55B.1.617.20.000019
ORF1ab/nsp4461T461NaCtaAt44AY.1110.000733
ORF1ab/nsp4461T461AActGct44AY.23.10.001669
ORF1ab/nsp4461T461NaCtaAt44AY.250.000024
ORF1ab/nsp4461T461AActGct44AY.260.000113
ORF1ab/nsp4461T461IaCtaTt44AY.330.000267
ORF1ab/nsp4461T461PActCct44AY.40.000006
ORF1ab/nsp4461T461delACT---44AY.430.000018
ORF1ab/nsp4461T461NaCtaAt44B.10.000037
ORF1ab/nsp4461T461delACT---44B.1.10.000073
ORF1ab/nsp4461T461AActGct44B.1.1.2200.007435
ORF1ab/nsp4461T461TacTacC34B.1.1.70.000003
ORF1ab/nsp4461T461TacTacA14B.1.1.70.000001
ORF1ab/nsp4461T461delACT---44B.1.177.40.000844
ORF1ab/nsp4461T461AActGct44B.1.2210.000284
ORF1ab/nsp4461T461IaCtaTt44B.1.4940.137931
ORF1ab/nsp4461T461delACT---44P.1.120.001936
ORF1ab/nsp4461T461SaCtaGt23All0
ORF1ab/nsp4461T461SaCTaGC13All0
ORF1ab/nsp4461T461NaCtaAt33AY.1190.000106
ORF1ab/nsp4461T461AActGct33AY.120.000948
ORF1ab/nsp4461T461IaCtaTt33AY.20.001068
ORF1ab/nsp4461T461NaCtaAt33AY.290.000047
ORF1ab/nsp4461T461delACT---33AY.390.000074
ORF1ab/nsp4461T461AActGct33AY.390.000074
ORF1ab/nsp4461T461NaCtaAt33AY.39.10.000119
ORF1ab/nsp4461T461delACT---33AY.40.000005
ORF1ab/nsp4461T461IaCtaTt33AY.4.20.000065
ORF1ab/nsp4461T461AActGct33AY.4.20.000065
ORF1ab/nsp4461T461AActGct33AY.750.000168
ORF1ab/nsp4461T461AActGct33AY.9.10.000251
ORF1ab/nsp4461T461AActGct33B.1.10.000054
ORF1ab/nsp4461T461TacTacC33B.1.1770.00004
ORF1ab/nsp4461T461AActGct33B.1.177.600.000655
ORF1ab/nsp4461T461NaCtaAt33B.1.36.340.06383
ORF1ab/nsp4461T461IaCtaTt33B.1.4290.000071
ORF1ab/nsp4461T461TacTacC33B.1.5960.000261
ORF1ab/nsp4461T461delACT---33P.10.000047
ORF1ab/nsp4461T461AActGct33P.1.140.000143
ORF1ab/nsp4461T461del1acTac-22All0
ORF1ab/nsp4461T461AActGct22AY.1090.001479
ORF1ab/nsp4461T461AActGct22AY.1200.000074
ORF1ab/nsp4461T461IaCtaTt22AY.1210.000271
ORF1ab/nsp4461T461TacTacC22AY.140.000176
ORF1ab/nsp4461T461IaCtaTt22AY.200.000078
ORF1ab/nsp4461T461AActGct22AY.230.000139
ORF1ab/nsp4461T461delACT---22AY.250.000012
ORF1ab/nsp4461T461IaCtaTt22AY.290.000032
ORF1ab/nsp4461T461SaCtaGt22AY.30.00002
ORF1ab/nsp4461T461NaCtaAt22AY.4.20.000043
ORF1ab/nsp4461T461AActGct22AY.4.40.000818
ORF1ab/nsp4461T461AActGct22AY.46.50.000397
ORF1ab/nsp4461T461IaCtaTt22AY.50.000041
ORF1ab/nsp4461T461delACT---22AY.520.001629
ORF1ab/nsp4461T461IaCtaTt22AY.60.000082
ORF1ab/nsp4461T461AActGct22AY.91.10.00813
ORF1ab/nsp4461T461AActGct22AY.99.20.000184
ORF1ab/nsp4461T461TacTacA12B.10.000009
ORF1ab/nsp4461T461TacTacG12B.10.000009
ORF1ab/nsp4461T461AActGct22B.1.1.3120.003824
ORF1ab/nsp4461T461delACT---22B.1.1.4090.005666
ORF1ab/nsp4461T461NaCtaAt22B.1.1770.000026
ORF1ab/nsp4461T461NaCtaAt22B.1.177.160.001329
ORF1ab/nsp4461T461AActGct22B.1.177.210.000153
ORF1ab/nsp4461T461delACT---22B.1.177.540.001213
ORF1ab/nsp4461T461IaCtaTt22B.1.20.000018
ORF1ab/nsp4461T461IaCtaTt22B.1.2580.000133
ORF1ab/nsp4461T461NaCtaAt22B.1.2600.006689
ORF1ab/nsp4461T461AActGct22B.1.3750.001639
ORF1ab/nsp4461T461IaCtaTt22B.1.4080.00738
ORF1ab/nsp4461T461AActGct22B.1.4270.000101
ORF1ab/nsp4461T461IaCtaTt22B.1.5260.000047
ORF1ab/nsp4461T461TacTacC22B.1.617.10.000258
ORF1ab/nsp4461T461PActCct22B.1.617.20.000008
ORF1ab/nsp4461T461AActGct22B.1.619.10.001283
ORF1ab/nsp4461T461AActGct22C.310.035714
ORF1ab/nsp4461T461TacTacC22D.20.00015
ORF1ab/nsp4461T461TacTacC11A.2.50.000499
ORF1ab/nsp4461T461AActGct11AL.10.012987
ORF1ab/nsp4461T461MaCTaTG11All0
ORF1ab/nsp4461T461del2ACt--t11All0
ORF1ab/nsp4461T461AActGct11AY.1050.000643
ORF1ab/nsp4461T461delACT---11AY.1080.001103
ORF1ab/nsp4461T461NaCtaAt11AY.1100.000113
ORF1ab/nsp4461T461NaCtaAt11AY.1140.000231
ORF1ab/nsp4461T461AActGct11AY.1160.000287
ORF1ab/nsp4461T461AActGct11AY.1180.000063
ORF1ab/nsp4461T461AActGct11AY.1190.000035
ORF1ab/nsp4461T461delACT---11AY.1200.000037
ORF1ab/nsp4461T461TacTacC11AY.1200.000037
ORF1ab/nsp4461T461TacTacA11AY.120.10.000321
ORF1ab/nsp4461T461TacTacA11AY.130.000161
ORF1ab/nsp4461T461AActGct11AY.140.000088
ORF1ab/nsp4461T461IaCtaTt11AY.160.00038
ORF1ab/nsp4461T461TacTacC11AY.230.00007
ORF1ab/nsp4461T461IaCtaTt11AY.230.00007
ORF1ab/nsp4461T461AActGct11AY.240.000431
ORF1ab/nsp4461T461TacTacC11AY.250.000006
ORF1ab/nsp4461T461NaCtaAt11AY.30.00001
ORF1ab/nsp4461T461NaCtaAt11AY.3.10.000085
ORF1ab/nsp4461T461AActGct11AY.34.10.00051
ORF1ab/nsp4461T461AActGct11AY.360.000148
ORF1ab/nsp4461T461AActGct11AY.39.10.00004
ORF1ab/nsp4461T461delACT---11AY.4.10.000737
ORF1ab/nsp4461T461delACT---11AY.4.2.10.000149
ORF1ab/nsp4461T461MaCTaTG11AY.400.000964
ORF1ab/nsp4461T461IaCtaTt11AY.410.000294
ORF1ab/nsp4461T461TacTacC11AY.430.000004
ORF1ab/nsp4461T461TacTacC11AY.450.000122
ORF1ab/nsp4461T461AActGct11AY.460.000104
ORF1ab/nsp4461T461IaCtaTt11AY.46.20.000635
ORF1ab/nsp4461T461delACT---11AY.46.20.000635
ORF1ab/nsp4461T461IaCtaTt11AY.46.40.000165
ORF1ab/nsp4461T461AActGct11AY.470.000031
ORF1ab/nsp4461T461del1acTac-11AY.50.000021
ORF1ab/nsp4461T461NaCtaAt11AY.5.40.000277
ORF1ab/nsp4461T461NaCtaAt11AY.530.000288
ORF1ab/nsp4461T461NaCtaAt11AY.560.001605
ORF1ab/nsp4461T461NaCtaAt11AY.580.000907
ORF1ab/nsp4461T461AActGct11AY.590.00053
ORF1ab/nsp4461T461delACT---11AY.60.000041
ORF1ab/nsp4461T461TacTacC11AY.650.000533
ORF1ab/nsp4461T461delACT---11AY.670.000464
ORF1ab/nsp4461T461PActCct11AY.7.10.000113
ORF1ab/nsp4461T461NaCtaAt11AY.700.000209
ORF1ab/nsp4461T461IaCtaTt11AY.750.000056
ORF1ab/nsp4461T461TacTacC11AY.90.000068
ORF1ab/nsp4461T461PActCct11AY.9.10.000084
ORF1ab/nsp4461T461delACT---11AY.9.20.000037
ORF1ab/nsp4461T461AActGct11AY.910.00073
ORF1ab/nsp4461T461NaCtaAt11AY.930.000273
ORF1ab/nsp4461T461IaCtaTt11AY.950.000761
ORF1ab/nsp4461T461TacTacC11B0.000128
ORF1ab/nsp4461T461TacTacC11B.1.10.000018
ORF1ab/nsp4461T461delACT---11B.1.1.1390.022727
ORF1ab/nsp4461T461AActGct11B.1.1.1710.003676
ORF1ab/nsp4461T461AActGct11B.1.1.2140.000055
ORF1ab/nsp4461T461delACT---11B.1.1.2360.006897
ORF1ab/nsp4461T461AActGct11B.1.1.280.000311
ORF1ab/nsp4461T461AActGct11B.1.1.2840.000107
ORF1ab/nsp4461T461IaCtaTt11B.1.1.2850.006536
ORF1ab/nsp4461T461AActGct11B.1.1.2910.000742
ORF1ab/nsp4461T461TacTacC11B.1.1.3110.000358
ORF1ab/nsp4461T461NaCtaAt11B.1.1.3170.000412
ORF1ab/nsp4461T461TacTacC11B.1.1.3180.000302
ORF1ab/nsp4461T461IaCtaTt11B.1.1.3480.000796
ORF1ab/nsp4461T461AActGct11B.1.1.3690.000446
ORF1ab/nsp4461T461AActGct11B.1.1.4340.000349
ORF1ab/nsp4461T461IaCtaTt11B.1.1.500.000679
ORF1ab/nsp4461T461delACT---11B.1.1.5280.004808
ORF1ab/nsp4461T461SaCTaGC11B.1.1.70.000001
ORF1ab/nsp4461T461del1acTac-11B.1.1.70.000001
ORF1ab/nsp4461T461del2ACt--t11B.1.1.70.000001
ORF1ab/nsp4461T461NaCtaAt11B.1.1600.000031
ORF1ab/nsp4461T461delACT---11B.1.1600.000031
ORF1ab/nsp4461T461delACT---11B.1.177.150.000631
ORF1ab/nsp4461T461delACT---11B.1.177.160.000664
ORF1ab/nsp4461T461delACT---11B.1.177.170.000821
ORF1ab/nsp4461T461delACT---11B.1.177.180.00116
ORF1ab/nsp4461T461IaCtaTt11B.1.177.200.001517
ORF1ab/nsp4461T461AActGct11B.1.177.40.000211
ORF1ab/nsp4461T461AActGct11B.1.177.520.001757
ORF1ab/nsp4461T461PActCct11B.1.177.530.002392
ORF1ab/nsp4461T461delACT---11B.1.177.630.002703
ORF1ab/nsp4461T461delACT---11B.1.177.690.001484
ORF1ab/nsp4461T461delACT---11B.1.177.760.002494
ORF1ab/nsp4461T461delACT---11B.1.177.810.000189
ORF1ab/nsp4461T461delACT---11B.1.1790.003759
ORF1ab/nsp4461T461delACT---11B.1.20.000009
ORF1ab/nsp4461T461TacTacC11B.1.20.000009
ORF1ab/nsp4461T461NaCtaAt11B.1.2210.000071
ORF1ab/nsp4461T461IaCtaTt11B.1.221.10.002907
ORF1ab/nsp4461T461IaCtaTt11B.1.2430.00007
ORF1ab/nsp4461T461AActGct11B.1.2430.00007
ORF1ab/nsp4461T461IaCtaTt11B.1.258.170.000104
ORF1ab/nsp4461T461AActGct11B.1.258.210.007752
ORF1ab/nsp4461T461IaCtaTt11B.1.2650.001271
ORF1ab/nsp4461T461AActGct11B.1.3200.001245
ORF1ab/nsp4461T461IaCtaTt11B.1.3200.001245
ORF1ab/nsp4461T461IaCtaTt11B.1.3380.008621
ORF1ab/nsp4461T461IaCtaTt11B.1.3490.000715
ORF1ab/nsp4461T461IaCtaTt11B.1.3510.00003
ORF1ab/nsp4461T461AActGct11B.1.3510.00003
ORF1ab/nsp4461T461PActCct11B.1.351.50.0006
ORF1ab/nsp4461T461delACT---11B.1.36.180.00042
ORF1ab/nsp4461T461IaCtaTt11B.1.36.350.002604
ORF1ab/nsp4461T461AActGct11B.1.3690.000285
ORF1ab/nsp4461T461IaCtaTt11B.1.3690.000285
ORF1ab/nsp4461T461delACT---11B.1.4290.000024
ORF1ab/nsp4461T461AActGct11B.1.4530.003236
ORF1ab/nsp4461T461delACT---11B.1.4560.003268
ORF1ab/nsp4461T461IaCtaTt11B.1.4800.002488
ORF1ab/nsp4461T461AActGct11B.1.5000.052632
ORF1ab/nsp4461T461NaCtaAt11B.1.5050.004386
ORF1ab/nsp4461T461AActGct11B.1.5250.000113
ORF1ab/nsp4461T461TacTacC11B.1.5300.007143
ORF1ab/nsp4461T461IaCtaTt11B.1.5750.000303
ORF1ab/nsp4461T461IaCtaTt11B.1.5760.000907
ORF1ab/nsp4461T461NaCtaAt11B.1.5950.000261
ORF1ab/nsp4461T461AActGct11B.1.5960.000087
ORF1ab/nsp4461T461NaCTaAC11B.1.617.10.000129
ORF1ab/nsp4461T461IaCtaTt11B.1.6210.000089
ORF1ab/nsp4461T461AActGct11B.1.6250.002353
ORF1ab/nsp4461T461TacTacC11B.30.000831
ORF1ab/nsp4461T461AActGct11B.30.000831
ORF1ab/nsp4461T461AActGct11B.400.000364
ORF1ab/nsp4461T461AActGct11C.350.000774
ORF1ab/nsp4461T461IaCtaTt11C.350.000774
ORF1ab/nsp4461T461TacTacA11C.350.000774
ORF1ab/nsp4461T461AActGct11C.370.000116
ORF1ab/nsp4461T461NaCtaAt11P.10.000016
ORF1ab/nsp4461T461AActGct11P.1.10.000318
ORF1ab/nsp4461T461delACT---11P.1.10.10.00813
ORF1ab/nsp4461T461IaCtaTt11P.1.140.000048
ORF1ab/nsp4461T461AActGct11P.1.150.000232
ORF1ab/nsp4461T461delACT---11P.1.150.000232
ORF1ab/nsp4461T461AActGct11P.1.170.000162
ORF1ab/nsp4461T461delACT---11Q.10.000126
ORF1ab/nsp4461T461AActGct11Q.40.000455
ORF1ab/nsp4461T461delACT---11Q.80.000165
ORF1ab/nsp4461T461AActGct11R.10.00009