CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 46 | Y46Y | Y2809Y | syn | taC | taT | 1349 | 1349 | 1 | 8690-8692 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1349 | 1349 | All | 0.000258 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 321 | 321 | B.1.1.7 | 0.000287 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 231 | 231 | AY.4 | 0.00036 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 175 | 175 | B.1.160.11 | 1 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 53 | 53 | B.1 | 0.000485 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 45 | 45 | AY.9.2 | 0.001653 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 37 | 37 | AY.39 | 0.000914 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 35 | 35 | AY.44 | 0.000213 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 23 | 23 | B.1.2 | 0.000203 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 22 | 22 | AY.98.1 | 0.001065 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 20 | 20 | AY.3 | 0.000199 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 20 | 20 | B.1.617.2 | 0.000075 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 17 | 17 | AY.14 | 0.001496 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 16 | 16 | AY.43 | 0.000071 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 15 | 15 | B.1.1.519 | 0.000596 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 15 | 15 | B.1.637 | 0.001096 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 14 | 14 | P.1 | 0.000221 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 12 | 12 | AY.33 | 0.000801 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 12 | 12 | B.1.369 | 0.003423 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 11 | 11 | AY.116 | 0.003155 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 11 | 11 | AY.3.1 | 0.000938 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 9 | 9 | AY.9 | 0.000608 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 9 | 9 | B.1.1.279 | 0.01009 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 9 | 9 | P.1.7 | 0.002874 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 8 | 8 | B.1.1.306 | 0.003507 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 5 | 5 | B.1.1.25 | 0.002843 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 5 | 5 | B.1.177.86 | 0.000917 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 5 | 5 | B.1.575.1 | 0.012195 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 4 | 4 | B.1.1.464 | 0.005891 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 3 | 3 | AY.115 | 0.015625 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 3 | 3 | B.1.1.228 | 0.009146 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 3 | 3 | B.1.349 | 0.002144 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 3 | 3 | B.1.567 | 0.01 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 2 | 2 | B.1.1.163 | 0.015267 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 2 | 2 | B.1.298 | 0.004228 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 2 | 2 | B.1.422 | 0.001625 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 2 | 2 | B.1.9 | 0.012346 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 2 | 2 | B.60 | 0.031746 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.213 | 0.014925 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp4 | 46 | Y46Y | taC | taT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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