CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 46

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp446Y46YY2809YsyntaCtaT1349134918690-8692
ORF1ab/nsp446Y46delY2809deldelTAC---868618690-8692
ORF1ab/nsp446Y46FY2809FnonsyntActTc323218690-8692
ORF1ab/nsp446Y46del1Y2809del1deltaCta-19140.7368428690-8692
ORF1ab/nsp446Y46del1Y2809del1delTac-ac1930.1578958690-8692
ORF1ab/nsp446Y46del1Y2809del1deltAct-c1920.1052638690-8692
ORF1ab/nsp446Y46CY2809CnonsyntActGc8818690-8692
ORF1ab/nsp446Y46HY2809HnonsynTacCac760.8571438690-8692
ORF1ab/nsp446Y46HY2809HnonsynTaCCaT710.1428578690-8692
ORF1ab/nsp446Y46XY2809XnonsyntaCtaA430.758690-8692
ORF1ab/nsp446Y46XY2809XnonsyntaCtaG410.258690-8692
ORF1ab/nsp446Y46NY2809NnonsynTacAac3318690-8692
ORF1ab/nsp446Y46SY2809SnonsyntActCc3318690-8692
ORF1ab/nsp446Y46del2Y2809del2deltACt--1118690-8692
ORF1ab/nsp446Y46TY2809TnonsynTACACA1118690-8692
ORF1ab/nsp446Y46DY2809DnonsynTacGac1118690-8692
ORF1ab/nsp446Y46KY2809KnonsynTaCAaA1118690-8692

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp446Y46YtaCtaT13491349All0.000258
ORF1ab/nsp446Y46YtaCtaT321321B.1.1.70.000287
ORF1ab/nsp446Y46YtaCtaT231231AY.40.00036
ORF1ab/nsp446Y46YtaCtaT175175B.1.160.111
ORF1ab/nsp446Y46delTAC---8686All0.000016
ORF1ab/nsp446Y46YtaCtaT5353B.10.000485
ORF1ab/nsp446Y46YtaCtaT4545AY.9.20.001653
ORF1ab/nsp446Y46YtaCtaT3737AY.390.000914
ORF1ab/nsp446Y46YtaCtaT3535AY.440.000213
ORF1ab/nsp446Y46delTAC---3333B.1.1.70.00003
ORF1ab/nsp446Y46FtActTc3232All0.000006
ORF1ab/nsp446Y46YtaCtaT2323B.1.20.000203
ORF1ab/nsp446Y46YtaCtaT2222AY.98.10.001065
ORF1ab/nsp446Y46YtaCtaT2020AY.30.000199
ORF1ab/nsp446Y46YtaCtaT2020B.1.617.20.000075
ORF1ab/nsp446Y46del1taCta-1419All0.000003
ORF1ab/nsp446Y46del1Tac-ac319All0.000001
ORF1ab/nsp446Y46del1tAct-c219All0
ORF1ab/nsp446Y46YtaCtaT1717AY.140.001496
ORF1ab/nsp446Y46YtaCtaT1616AY.430.000071
ORF1ab/nsp446Y46YtaCtaT1515B.1.1.5190.000596
ORF1ab/nsp446Y46YtaCtaT1515B.1.6370.001096
ORF1ab/nsp446Y46YtaCtaT1414P.10.000221
ORF1ab/nsp446Y46YtaCtaT1212AY.330.000801
ORF1ab/nsp446Y46YtaCtaT1212B.1.3690.003423
ORF1ab/nsp446Y46YtaCtaT1111AY.1160.003155
ORF1ab/nsp446Y46YtaCtaT1111AY.3.10.000938
ORF1ab/nsp446Y46YtaCtaT1111B.1.10.0002
ORF1ab/nsp446Y46YtaCtaT1010AY.250.00006
ORF1ab/nsp446Y46FtActTc1010B.1.1.70.000009
ORF1ab/nsp446Y46YtaCtaT99AY.90.000608
ORF1ab/nsp446Y46YtaCtaT99B.1.1.2790.01009
ORF1ab/nsp446Y46YtaCtaT99B.1.1600.000281
ORF1ab/nsp446Y46FtActTc99B.1.5090.007792
ORF1ab/nsp446Y46YtaCtaT99P.1.70.002874
ORF1ab/nsp446Y46CtActGc88All0.000002
ORF1ab/nsp446Y46del1taCta-88AY.40.000012
ORF1ab/nsp446Y46YtaCtaT88B.1.1.3060.003507
ORF1ab/nsp446Y46HTacCac67All0.000001
ORF1ab/nsp446Y46HTaCCaT17All0
ORF1ab/nsp446Y46YtaCtaT77AY.290.00011
ORF1ab/nsp446Y46YtaCtaT77AY.470.000218
ORF1ab/nsp446Y46delTAC---77B.10.000064
ORF1ab/nsp446Y46YtaCtaT66AY.1180.000376
ORF1ab/nsp446Y46delTAC---66AY.430.000027
ORF1ab/nsp446Y46YtaCtaT66B.1.1770.000079
ORF1ab/nsp446Y46YtaCtaT66B.1.5260.000141
ORF1ab/nsp446Y46YtaCtaT55B.1.1.250.002843
ORF1ab/nsp446Y46YtaCtaT55B.1.177.860.000917
ORF1ab/nsp446Y46YtaCtaT55B.1.575.10.012195
ORF1ab/nsp446Y46XtaCtaA34All0.000001
ORF1ab/nsp446Y46XtaCtaG14All0
ORF1ab/nsp446Y46YtaCtaT44AY.200.000155
ORF1ab/nsp446Y46YtaCtaT44AY.260.000113
ORF1ab/nsp446Y46YtaCtaT44AY.39.10.000158
ORF1ab/nsp446Y46delTAC---44AY.40.000006
ORF1ab/nsp446Y46YtaCtaT44B.1.1.4640.005891
ORF1ab/nsp446Y46delTAC---44B.1.1770.000053
ORF1ab/nsp446Y46YtaCtaT44B.1.2210.000284
ORF1ab/nsp446Y46StActCc33All0.000001
ORF1ab/nsp446Y46NTacAac33All0.000001
ORF1ab/nsp446Y46YtaCtaT33AY.1020.00008
ORF1ab/nsp446Y46YtaCtaT33AY.1150.015625
ORF1ab/nsp446Y46YtaCtaT33AY.1210.000406
ORF1ab/nsp446Y46del1taCta-33AY.4.20.000065
ORF1ab/nsp446Y46YtaCtaT33AY.610.000314
ORF1ab/nsp446Y46YtaCtaT33B.1.1.2280.009146
ORF1ab/nsp446Y46YtaCtaT33B.1.1.3480.002389
ORF1ab/nsp446Y46YtaCtaT33B.1.177.210.000229
ORF1ab/nsp446Y46YtaCtaT33B.1.3490.002144
ORF1ab/nsp446Y46YtaCtaT33B.1.360.000438
ORF1ab/nsp446Y46YtaCtaT33B.1.4270.000151
ORF1ab/nsp446Y46YtaCtaT33B.1.5670.01
ORF1ab/nsp446Y46delTAC---220.111111
ORF1ab/nsp446Y46YtaCtaT22AY.1030.000012
ORF1ab/nsp446Y46CtActGc22AY.230.000139
ORF1ab/nsp446Y46YtaCtaT22AY.4.20.000043
ORF1ab/nsp446Y46YtaCtaT22AY.460.000208
ORF1ab/nsp446Y46YtaCtaT22AY.46.10.002053
ORF1ab/nsp446Y46YtaCtaT22AY.46.40.000329
ORF1ab/nsp446Y46del1Tac-ac12B.10.000009
ORF1ab/nsp446Y46del1tAct-c12B.10.000009
ORF1ab/nsp446Y46delTAC---22B.1.10.000036
ORF1ab/nsp446Y46YtaCtaT22B.1.1.1630.015267
ORF1ab/nsp446Y46YtaCtaT22B.1.1.2940.002532
ORF1ab/nsp446Y46delTAC---22B.1.1.3150.016949
ORF1ab/nsp446Y46YtaCtaT22B.1.1.330.000842
ORF1ab/nsp446Y46del1taCta-22B.1.1.70.000002
ORF1ab/nsp446Y46NTacAac22B.1.1.70.000002
ORF1ab/nsp446Y46delTAC---22B.1.20.000018
ORF1ab/nsp446Y46del1Tac-ac12B.1.20.000009
ORF1ab/nsp446Y46del1tAct-c12B.1.20.000009
ORF1ab/nsp446Y46YtaCtaT22B.1.2340.000264
ORF1ab/nsp446Y46YtaCtaT22B.1.2980.004228
ORF1ab/nsp446Y46YtaCtaT22B.1.4220.001625
ORF1ab/nsp446Y46YtaCtaT22B.1.4280.002041
ORF1ab/nsp446Y46YtaCtaT22B.1.438.10.000215
ORF1ab/nsp446Y46delTAC---22B.1.6210.000177
ORF1ab/nsp446Y46YtaCtaT22B.1.90.012346
ORF1ab/nsp446Y46YtaCtaT22B.600.031746
ORF1ab/nsp446Y46FtActTc22P.10.000032
ORF1ab/nsp446Y46YtaCtaT11A0.000387
ORF1ab/nsp446Y46TTACACA11All0
ORF1ab/nsp446Y46KTaCAaA11All0
ORF1ab/nsp446Y46DTacGac11All0
ORF1ab/nsp446Y46del2tACt--11All0
ORF1ab/nsp446Y46YtaCtaT11AY.1000.000046
ORF1ab/nsp446Y46FtActTc11AY.1020.000027
ORF1ab/nsp446Y46FtActTc11AY.1030.000006
ORF1ab/nsp446Y46XtaCtaA11AY.1030.000006
ORF1ab/nsp446Y46YtaCtaT11AY.1130.000142
ORF1ab/nsp446Y46YtaCtaT11AY.116.10.000311
ORF1ab/nsp446Y46YtaCtaT11AY.1170.000085
ORF1ab/nsp446Y46YtaCtaT11AY.1190.000035
ORF1ab/nsp446Y46TTACACA11AY.1190.000035
ORF1ab/nsp446Y46YtaCtaT11AY.160.00038
ORF1ab/nsp446Y46NTacAac11AY.200.000039
ORF1ab/nsp446Y46StActCc11AY.230.00007
ORF1ab/nsp446Y46YtaCtaT11AY.230.00007
ORF1ab/nsp446Y46FtActTc11AY.230.00007
ORF1ab/nsp446Y46CtActGc11AY.23.10.000417
ORF1ab/nsp446Y46FtActTc11AY.250.000006
ORF1ab/nsp446Y46YtaCtaT11AY.320.000532
ORF1ab/nsp446Y46delTAC---11AY.330.000067
ORF1ab/nsp446Y46FtActTc11AY.340.000097
ORF1ab/nsp446Y46delTAC---11AY.34.10.00051
ORF1ab/nsp446Y46YtaCtaT11AY.360.000148
ORF1ab/nsp446Y46YtaCtaT11AY.380.000499
ORF1ab/nsp446Y46FtActTc11AY.40.000002
ORF1ab/nsp446Y46del1taCta-11AY.4.2.10.000149
ORF1ab/nsp446Y46delTAC---11AY.4.50.000107
ORF1ab/nsp446Y46delTAC---11AY.420.00004
ORF1ab/nsp446Y46delTAC---11AY.46.20.000635
ORF1ab/nsp446Y46YtaCtaT11AY.46.50.000198
ORF1ab/nsp446Y46YtaCtaT11AY.46.60.000072
ORF1ab/nsp446Y46FtActTc11AY.470.000031
ORF1ab/nsp446Y46HTacCac11AY.50.000021
ORF1ab/nsp446Y46YtaCtaT11AY.530.000288
ORF1ab/nsp446Y46YtaCtaT11AY.540.000095
ORF1ab/nsp446Y46YtaCtaT11AY.590.00053
ORF1ab/nsp446Y46delTAC---11AY.590.00053
ORF1ab/nsp446Y46HTacCac11AY.590.00053
ORF1ab/nsp446Y46YtaCtaT11AY.60.000041
ORF1ab/nsp446Y46delTAC---11AY.600.000938
ORF1ab/nsp446Y46YtaCtaT11AY.710.000475
ORF1ab/nsp446Y46YtaCtaT11AY.750.000056
ORF1ab/nsp446Y46YtaCtaT11AY.760.004831
ORF1ab/nsp446Y46YtaCtaT11AY.99.20.000092
ORF1ab/nsp446Y46DTacGac11B0.000128
ORF1ab/nsp446Y46XtaCtaG11B.10.000009
ORF1ab/nsp446Y46StActCc11B.10.000009
ORF1ab/nsp446Y46HTacCac11B.1.10.000018
ORF1ab/nsp446Y46XtaCtaA11B.1.10.000018
ORF1ab/nsp446Y46HTacCac11B.1.1.10.000327
ORF1ab/nsp446Y46YtaCtaT11B.1.1.1210.002427
ORF1ab/nsp446Y46YtaCtaT11B.1.1.1760.000439
ORF1ab/nsp446Y46YtaCtaT11B.1.1.1920.002309
ORF1ab/nsp446Y46YtaCtaT11B.1.1.2140.000055
ORF1ab/nsp446Y46YtaCtaT11B.1.1.2770.000759
ORF1ab/nsp446Y46delTAC---11B.1.1.3060.000438
ORF1ab/nsp446Y46YtaCtaT11B.1.1.3260.001761
ORF1ab/nsp446Y46del1Tac-ac11B.1.1.3530.020833
ORF1ab/nsp446Y46YtaCtaT11B.1.1.370.000193
ORF1ab/nsp446Y46delTAC---11B.1.1.4090.002833
ORF1ab/nsp446Y46YtaCtaT11B.1.1.4860.001577
ORF1ab/nsp446Y46delTAC---11B.1.1.5190.00004
ORF1ab/nsp446Y46KTaCAaA11B.1.1.70.000001
ORF1ab/nsp446Y46CtActGc11B.1.1.70.000001
ORF1ab/nsp446Y46HTacCac11B.1.1.70.000001
ORF1ab/nsp446Y46delTAC---11B.1.1.700.000341
ORF1ab/nsp446Y46delTAC---11B.1.1400.018868
ORF1ab/nsp446Y46FtActTc11B.1.1600.000031
ORF1ab/nsp446Y46CtActGc11B.1.1600.000031
ORF1ab/nsp446Y46del2tACt--11B.1.177.570.000281
ORF1ab/nsp446Y46delTAC---11B.1.177.570.000281
ORF1ab/nsp446Y46delTAC---11B.1.177.620.001192
ORF1ab/nsp446Y46delTAC---11B.1.177.70.000165
ORF1ab/nsp446Y46YtaCtaT11B.1.177.730.000566
ORF1ab/nsp446Y46delTAC---11B.1.177.830.001481
ORF1ab/nsp446Y46YtaCtaT11B.1.177.870.000728
ORF1ab/nsp446Y46FtActTc11B.1.20.000009
ORF1ab/nsp446Y46CtActGc11B.1.20.000009
ORF1ab/nsp446Y46HTacCac11B.1.20.000009
ORF1ab/nsp446Y46YtaCtaT11B.1.2060.000816
ORF1ab/nsp446Y46YtaCtaT11B.1.2130.014925
ORF1ab/nsp446Y46delTAC---11B.1.221.10.002907
ORF1ab/nsp446Y46CtActGc11B.1.2390.001221
ORF1ab/nsp446Y46YtaCtaT11B.1.2580.000067
ORF1ab/nsp446Y46YtaCtaT11B.1.258.170.000104
ORF1ab/nsp446Y46delTAC---11B.1.360.000146
ORF1ab/nsp446Y46YtaCtaT11B.1.36.160.001425
ORF1ab/nsp446Y46YtaCtaT11B.1.4080.00369
ORF1ab/nsp446Y46YtaCtaT11B.1.4260.001009
ORF1ab/nsp446Y46FtActTc11B.1.4270.00005
ORF1ab/nsp446Y46YtaCtaT11B.1.4290.000024
ORF1ab/nsp446Y46StActCc11B.1.4290.000024
ORF1ab/nsp446Y46YtaCtaT11B.1.466.20.000391
ORF1ab/nsp446Y46YtaCtaT11B.1.4700.001404
ORF1ab/nsp446Y46YtaCtaT11B.1.5250.000113
ORF1ab/nsp446Y46YtaCtaT11B.1.5330.009615
ORF1ab/nsp446Y46FtActTc11B.1.5650.00081
ORF1ab/nsp446Y46delTAC---11B.1.5960.000087
ORF1ab/nsp446Y46delTAC---11B.1.617.10.000129
ORF1ab/nsp446Y46CtActGc11B.1.617.10.000129
ORF1ab/nsp446Y46YtaCtaT11B.1.617.10.000129
ORF1ab/nsp446Y46delTAC---11B.1.617.20.000004
ORF1ab/nsp446Y46YtaCtaT11B.1.6250.002353
ORF1ab/nsp446Y46HTaCCaT11C.350.000774
ORF1ab/nsp446Y46YtaCtaT11C.370.000116
ORF1ab/nsp446Y46XtaCtaA11D.20.000075
ORF1ab/nsp446Y46YtaCtaT11L.30.003546
ORF1ab/nsp446Y46delTAC---11P.10.000016
ORF1ab/nsp446Y46YtaCtaT11P.1.100.000269
ORF1ab/nsp446Y46YtaCtaT11R.10.00009