CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 459

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4459D459ND3222NnonsynGatAat371037000.9973059929-9931
ORF1ab/nsp4459D459ND3222NnonsynGaTAaC3710100.002695429929-9931
ORF1ab/nsp4459D459DD3222DsyngaTgaC1196119619929-9931
ORF1ab/nsp4459D459TD3222TnonsynGATACA1931910.9896379929-9931
ORF1ab/nsp4459D459TD3222TnonsynGAtACt19320.01036279929-9931
ORF1ab/nsp4459D459GD3222GnonsyngAtgGt14214219929-9931
ORF1ab/nsp4459D459delD3222deldelGAT---13313319929-9931
ORF1ab/nsp4459D459YD3222YnonsynGatTat18170.9444449929-9931
ORF1ab/nsp4459D459YD3222YnonsynGaTTaC1810.05555569929-9931
ORF1ab/nsp4459D459AD3222AnonsyngAtgCt15140.9333339929-9931
ORF1ab/nsp4459D459AD3222AnonsyngATgCA1510.06666679929-9931
ORF1ab/nsp4459D459ED3222EnonsyngaTgaG740.5714299929-9931
ORF1ab/nsp4459D459ED3222EnonsyngaTgaA730.4285719929-9931
ORF1ab/nsp4459D459HD3222HnonsynGatCat3319929-9931
ORF1ab/nsp4459D459VD3222VnonsyngAtgTt2219929-9931
ORF1ab/nsp4459D459KD3222KnonsynGaTAaA2219929-9931
ORF1ab/nsp4459D459del1D3222del1delgaTga-210.59929-9931
ORF1ab/nsp4459D459del2D3222del2delGAt--t210.59929-9931
ORF1ab/nsp4459D459del2D3222del2delgATg--210.59929-9931
ORF1ab/nsp4459D459del1D3222del1delGat-at210.59929-9931

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4459D459NGatAat37003710All0.000708
ORF1ab/nsp4459D459NGaTAaC103710All0.000002
ORF1ab/nsp4459D459NGatAat17461747C.36.30.990357
ORF1ab/nsp4459D459NGaTAaC11747C.36.30.000567
ORF1ab/nsp4459D459DgaTgaC11961196All0.000229
ORF1ab/nsp4459D459NGatAat522522C.360.47541
ORF1ab/nsp4459D459NGatAat503507B.1.1.70.00045
ORF1ab/nsp4459D459NGaTAaC4507B.1.1.70.000004
ORF1ab/nsp4459D459NGatAat328328C.36.3.10.891304
ORF1ab/nsp4459D459DgaTgaC285285B.1.1.70.000255
ORF1ab/nsp4459D459TGATACA191193All0.000037
ORF1ab/nsp4459D459TGAtACt2193All0
ORF1ab/nsp4459D459DgaTgaC176176B.1.617.20.000663
ORF1ab/nsp4459D459GgAtgGt142142All0.000027
ORF1ab/nsp4459D459delGAT---133133All0.000025
ORF1ab/nsp4459D459NGatAat132132B.10.001209
ORF1ab/nsp4459D459DgaTgaC126126AY.430.000558
ORF1ab/nsp4459D459TGATACA118118B.10.001081
ORF1ab/nsp4459D459DgaTgaC7474AY.1020.001962
ORF1ab/nsp4459D459DgaTgaC7272AY.1030.000447
ORF1ab/nsp4459D459NGatAat6969B.1.243.21
ORF1ab/nsp4459D459TGATACA6566B.1.10.001179
ORF1ab/nsp4459D459TGAtACt166B.1.10.000018
ORF1ab/nsp4459D459DgaTgaC4949B.1.4290.001153
ORF1ab/nsp4459D459NGatAat4646B.1.5090.039827
ORF1ab/nsp4459D459DgaTgaC4444AY.40.000068
ORF1ab/nsp4459D459delGAT---4242B.1.1.70.000038
ORF1ab/nsp4459D459DgaTgaC3939AY.250.000235
ORF1ab/nsp4459D459GgAtgGt3838AY.1030.000236
ORF1ab/nsp4459D459NGatAat3737AY.40.000058
ORF1ab/nsp4459D459NGatAat3333B.1.3460.04325
ORF1ab/nsp4459D459NGatAat3030B.1.10.000544
ORF1ab/nsp4459D459NGatAat2424B.1.1820.173913
ORF1ab/nsp4459D459DgaTgaC2020B.10.000183
ORF1ab/nsp4459D459NGatAat2020B.1.1770.000263
ORF1ab/nsp4459D459YGatTat1718All0.000003
ORF1ab/nsp4459D459YGaTTaC118All0
ORF1ab/nsp4459D459GgAtgGt1717AY.40.000026
ORF1ab/nsp4459D459DgaTgaC1717AY.440.000103
ORF1ab/nsp4459D459NGatAat1616AY.60.000658
ORF1ab/nsp4459D459DgaTgaC1616B.1.177.430.023634
ORF1ab/nsp4459D459AgAtgCt1415All0.000003
ORF1ab/nsp4459D459AgATgCA115All0
ORF1ab/nsp4459D459DgaTgaC1414AY.30.000139
ORF1ab/nsp4459D459DgaTgaC1414B.1.2390.017094
ORF1ab/nsp4459D459NGatAat1414B.1.617.20.000053
ORF1ab/nsp4459D459GgAtgGt1313AY.440.000079
ORF1ab/nsp4459D459DgaTgaC1313B.1.20.000114
ORF1ab/nsp4459D459DgaTgaC1212B.1.10.000218
ORF1ab/nsp4459D459GgAtgGt1212B.1.617.20.000045
ORF1ab/nsp4459D459DgaTgaC1111AY.470.000342
ORF1ab/nsp4459D459NGatAat1010AY.1000.00046
ORF1ab/nsp4459D459GgAtgGt1010AY.250.00006
ORF1ab/nsp4459D459DgaTgaC1010AY.4.20.000217
ORF1ab/nsp4459D459DgaTgaC1010AY.980.00079
ORF1ab/nsp4459D459DgaTgaC1010B.1.6210.000885
ORF1ab/nsp4459D459DgaTgaC1010B.40.022075
ORF1ab/nsp4459D459GgAtgGt99AY.30.00009
ORF1ab/nsp4459D459NGatAat99AY.430.00004
ORF1ab/nsp4459D459delGAT---99B.10.000082
ORF1ab/nsp4459D459NGatAat88AY.200.000311
ORF1ab/nsp4459D459NGatAat88B.1.1.2940.010127
ORF1ab/nsp4459D459DgaTgaC88B.1.1600.00025
ORF1ab/nsp4459D459DgaTgaC88B.1.1700.034483
ORF1ab/nsp4459D459DgaTgaC88B.1.5260.000188
ORF1ab/nsp4459D459NGatAat88P.1.70.002554
ORF1ab/nsp4459D459EgaTgaG47All0.000001
ORF1ab/nsp4459D459EgaTgaA37All0.000001
ORF1ab/nsp4459D459GgAtgGt77AY.1000.000322
ORF1ab/nsp4459D459DgaTgaC77AY.1190.000247
ORF1ab/nsp4459D459DgaTgaC77AY.920.002011
ORF1ab/nsp4459D459DgaTgaC77P.10.00011
ORF1ab/nsp4459D459NGatAat77P.1.140.000335
ORF1ab/nsp4459D459NGatAat66AY.1210.000812
ORF1ab/nsp4459D459DgaTgaC66AY.390.000148
ORF1ab/nsp4459D459delGAT---66AY.750.000336
ORF1ab/nsp4459D459NGatAat66C.170.333333
ORF1ab/nsp4459D459AgAtgCt55AY.250.00003
ORF1ab/nsp4459D459delGAT---55AY.4.50.000537
ORF1ab/nsp4459D459DgaTgaC55AY.46.40.000823
ORF1ab/nsp4459D459delGAT---55B.1.1770.000066
ORF1ab/nsp4459D459NGatAat55B.1.230.030303
ORF1ab/nsp4459D459DgaTgaC55B.1.2580.000333
ORF1ab/nsp4459D459DgaTgaC55B.1.5960.000436
ORF1ab/nsp4459D459delGAT---55B.1.617.20.000019
ORF1ab/nsp4459D459NGatAat55C.350.00387
ORF1ab/nsp4459D459NGatAat55C.390.09434
ORF1ab/nsp4459D459NGatAat55P.50.068493
ORF1ab/nsp4459D459NGatAat44AY.260.000113
ORF1ab/nsp4459D459NGatAat44AY.3.10.000341
ORF1ab/nsp4459D459delGAT---44AY.430.000018
ORF1ab/nsp4459D459DgaTgaC44AY.540.000381
ORF1ab/nsp4459D459DgaTgaC44AZ.20.003284
ORF1ab/nsp4459D459YGatTat44B.10.000037
ORF1ab/nsp4459D459delGAT---44B.1.10.000073
ORF1ab/nsp4459D459EgaTgaG34B.1.1.70.000003
ORF1ab/nsp4459D459EgaTgaA14B.1.1.70.000001
ORF1ab/nsp4459D459delGAT---44B.1.177.40.000844
ORF1ab/nsp4459D459DgaTgaC44B.1.2430.000278
ORF1ab/nsp4459D459DgaTgaC44B.1.4990.004202
ORF1ab/nsp4459D459NGatAat44B.1.6370.000292
ORF1ab/nsp4459D459delGAT---44P.1.120.001936
ORF1ab/nsp4459D459HGatCat33All0.000001
ORF1ab/nsp4459D459NGatAat33AY.1030.000019
ORF1ab/nsp4459D459DgaTgaC33AY.200.000117
ORF1ab/nsp4459D459GgAtgGt33AY.230.000209
ORF1ab/nsp4459D459TGATACA33AY.230.000209
ORF1ab/nsp4459D459YGatTat33AY.250.000018
ORF1ab/nsp4459D459DgaTgaC33AY.260.000085
ORF1ab/nsp4459D459delGAT---33AY.390.000074
ORF1ab/nsp4459D459delGAT---33AY.40.000005
ORF1ab/nsp4459D459GgAtgGt33AY.430.000013
ORF1ab/nsp4459D459YGatTat33AY.440.000018
ORF1ab/nsp4459D459NGatAat33AY.440.000018
ORF1ab/nsp4459D459GgAtgGt33AY.460.000312
ORF1ab/nsp4459D459DgaTgaC33AY.840.001312
ORF1ab/nsp4459D459NGatAat33B.1.1.10.00098
ORF1ab/nsp4459D459NGatAat33B.1.1.280.000934
ORF1ab/nsp4459D459DgaTgaC33B.1.1.3480.002389
ORF1ab/nsp4459D459DgaTgaC33B.1.1.5190.000119
ORF1ab/nsp4459D459GgAtgGt33B.1.1.5190.000119
ORF1ab/nsp4459D459TGATACA23B.1.1600.000062
ORF1ab/nsp4459D459TGAtACt13B.1.1600.000031
ORF1ab/nsp4459D459DgaTgaC33B.1.177.200.004552
ORF1ab/nsp4459D459NGatAat33B.1.2390.003663
ORF1ab/nsp4459D459DgaTgaC33B.1.258.170.000312
ORF1ab/nsp4459D459NGatAat33B.1.3510.000089
ORF1ab/nsp4459D459DgaTgaC33B.1.360.000438
ORF1ab/nsp4459D459DgaTgaC33B.1.617.10.000387
ORF1ab/nsp4459D459NGatAat33B.60.00273
ORF1ab/nsp4459D459NGatAat33C.160.003181
ORF1ab/nsp4459D459delGAT---33P.10.000047
ORF1ab/nsp4459D459NGatAat23P.10.000032
ORF1ab/nsp4459D459NGaTAaC13P.10.000016
ORF1ab/nsp4459D459DgaTgaC33P.1.140.000143
ORF1ab/nsp4459D459VgAtgTt22All0
ORF1ab/nsp4459D459KGaTAaA22All0
ORF1ab/nsp4459D459del1gaTga-12All0
ORF1ab/nsp4459D459del2GAt--t12All0
ORF1ab/nsp4459D459del2gATg--12All0
ORF1ab/nsp4459D459del1Gat-at12All0
ORF1ab/nsp4459D459NGatAat22AY.1020.000053
ORF1ab/nsp4459D459DgaTgaC22AY.1060.00067
ORF1ab/nsp4459D459NGatAat22AY.140.000176
ORF1ab/nsp4459D459DgaTgaC22AY.140.000176
ORF1ab/nsp4459D459DgaTgaC22AY.230.000139
ORF1ab/nsp4459D459NGatAat22AY.250.000012
ORF1ab/nsp4459D459DgaTgaC22AY.270.000129
ORF1ab/nsp4459D459GgAtgGt22AY.3.10.000171
ORF1ab/nsp4459D459NGatAat22AY.380.000999
ORF1ab/nsp4459D459YGatTat22AY.40.000003
ORF1ab/nsp4459D459GgAtgGt22AY.4.20.000043
ORF1ab/nsp4459D459DgaTgaC22AY.460.000208
ORF1ab/nsp4459D459DgaTgaC22AY.50.000041
ORF1ab/nsp4459D459delGAT---22AY.520.001629
ORF1ab/nsp4459D459NGatAat22AY.530.000575
ORF1ab/nsp4459D459DgaTgaC22AY.550.001835
ORF1ab/nsp4459D459DgaTgaC22AY.90.000135
ORF1ab/nsp4459D459NGatAat22B.1.1.2410.004141
ORF1ab/nsp4459D459NGatAat22B.1.1.3720.001377
ORF1ab/nsp4459D459delGAT---22B.1.1.4090.005666
ORF1ab/nsp4459D459NGatAat22B.1.1.4580.083333
ORF1ab/nsp4459D459AgAtgCt12B.1.1600.000031
ORF1ab/nsp4459D459AgATgCA12B.1.1600.000031
ORF1ab/nsp4459D459DgaTgaC22B.1.1770.000026
ORF1ab/nsp4459D459delGAT---22B.1.177.540.001213
ORF1ab/nsp4459D459NGatAat12B.1.20.000009
ORF1ab/nsp4459D459NGaTAaC12B.1.20.000009
ORF1ab/nsp4459D459NGatAat22B.1.3240.00321
ORF1ab/nsp4459D459NGatAat22B.1.3750.001639
ORF1ab/nsp4459D459NGatAat22B.1.4480.005249
ORF1ab/nsp4459D459DgaTgaC22B.1.5640.000852
ORF1ab/nsp4459D459DgaTgaC22B.1.5680.002222
ORF1ab/nsp4459D459DgaTgaC22B.1.5950.000522
ORF1ab/nsp4459D459NGatAat22B.1.6230.001073
ORF1ab/nsp4459D459NGatAat22B.1.810.042553
ORF1ab/nsp4459D459NGatAat22Q.80.00033
ORF1ab/nsp4459D459GgAtgGt11A.2.50.000499
ORF1ab/nsp4459D459DgaTgaC11AS.10.009524
ORF1ab/nsp4459D459EgaTgaG11AY.1000.000046
ORF1ab/nsp4459D459NGatAat11AY.1010.00049
ORF1ab/nsp4459D459GgAtgGt11AY.1020.000027
ORF1ab/nsp4459D459GgAtgGt11AY.1050.000643
ORF1ab/nsp4459D459NGatAat11AY.1070.000466
ORF1ab/nsp4459D459delGAT---11AY.1080.001103
ORF1ab/nsp4459D459AgAtgCt11AY.1110.000183
ORF1ab/nsp4459D459DgaTgaC11AY.1110.000183
ORF1ab/nsp4459D459GgAtgGt11AY.116.10.000311
ORF1ab/nsp4459D459NGatAat11AY.1170.000085
ORF1ab/nsp4459D459DgaTgaC11AY.1170.000085
ORF1ab/nsp4459D459GgAtgGt11AY.1190.000035
ORF1ab/nsp4459D459AgAtgCt11AY.1190.000035
ORF1ab/nsp4459D459GgAtgGt11AY.1200.000037
ORF1ab/nsp4459D459delGAT---11AY.1200.000037
ORF1ab/nsp4459D459NGatAat11AY.120.10.000321
ORF1ab/nsp4459D459GgAtgGt11AY.200.000039
ORF1ab/nsp4459D459DgaTgaC11AY.240.000431
ORF1ab/nsp4459D459del2gATg--11AY.250.000006
ORF1ab/nsp4459D459delGAT---11AY.250.000006
ORF1ab/nsp4459D459delGAT---11AY.260.000028
ORF1ab/nsp4459D459HGatCat11AY.270.000065
ORF1ab/nsp4459D459GgAtgGt11AY.290.000016
ORF1ab/nsp4459D459NGatAat11AY.290.000016
ORF1ab/nsp4459D459AgAtgCt11AY.30.00001
ORF1ab/nsp4459D459HGatCat11AY.30.00001
ORF1ab/nsp4459D459NGaTAaC11AY.30.00001
ORF1ab/nsp4459D459DgaTgaC11AY.330.000067
ORF1ab/nsp4459D459GgAtgGt11AY.340.000097
ORF1ab/nsp4459D459DgaTgaC11AY.34.10.00051
ORF1ab/nsp4459D459NGatAat11AY.370.000316
ORF1ab/nsp4459D459AgAtgCt11AY.390.000025
ORF1ab/nsp4459D459GgAtgGt11AY.390.000025
ORF1ab/nsp4459D459NGatAat11AY.390.000025
ORF1ab/nsp4459D459GgAtgGt11AY.39.10.00004
ORF1ab/nsp4459D459del1Gat-at11AY.40.000002
ORF1ab/nsp4459D459delGAT---11AY.4.10.000737
ORF1ab/nsp4459D459NGatAat11AY.4.20.000022
ORF1ab/nsp4459D459delGAT---11AY.4.2.10.000149
ORF1ab/nsp4459D459DgaTgaC11AY.4.40.000409
ORF1ab/nsp4459D459GgAtgGt11AY.4.40.000409
ORF1ab/nsp4459D459DgaTgaC11AY.420.00004
ORF1ab/nsp4459D459DgaTgaC11AY.450.000122
ORF1ab/nsp4459D459delGAT---11AY.46.20.000635
ORF1ab/nsp4459D459del2GAt--t11AY.50.000021
ORF1ab/nsp4459D459AgAtgCt11AY.50.000021
ORF1ab/nsp4459D459GgAtgGt11AY.50.000021
ORF1ab/nsp4459D459DgaTgaC11AY.520.000814
ORF1ab/nsp4459D459AgAtgCt11AY.60.000041
ORF1ab/nsp4459D459delGAT---11AY.60.000041
ORF1ab/nsp4459D459YGatTat11AY.60.000041
ORF1ab/nsp4459D459GgAtgGt11AY.60.000041
ORF1ab/nsp4459D459DgaTgaC11AY.610.000105
ORF1ab/nsp4459D459DgaTgaC11AY.670.000464
ORF1ab/nsp4459D459delGAT---11AY.670.000464
ORF1ab/nsp4459D459DgaTgaC11AY.680.000274
ORF1ab/nsp4459D459GgAtgGt11AY.70.000196
ORF1ab/nsp4459D459DgaTgaC11AY.740.000116
ORF1ab/nsp4459D459NGatAat11AY.740.000116
ORF1ab/nsp4459D459NGaTAaC11AY.750.000056
ORF1ab/nsp4459D459GgAtgGt11AY.840.000437
ORF1ab/nsp4459D459DgaTgaC11AY.880.000884
ORF1ab/nsp4459D459delGAT---11AY.9.20.000037
ORF1ab/nsp4459D459DgaTgaC11AY.9.20.000037
ORF1ab/nsp4459D459DgaTgaC11AY.930.000273
ORF1ab/nsp4459D459DgaTgaC11AY.970.001701
ORF1ab/nsp4459D459DgaTgaC11AY.99.20.000092
ORF1ab/nsp4459D459NGatAat11B0.000128
ORF1ab/nsp4459D459EgaTgaA11B.1.10.000018
ORF1ab/nsp4459D459AgAtgCt11B.1.10.000018
ORF1ab/nsp4459D459DgaTgaC11B.1.1.1340.011364
ORF1ab/nsp4459D459delGAT---11B.1.1.1390.022727
ORF1ab/nsp4459D459TGATACA11B.1.1.1610.003534
ORF1ab/nsp4459D459NGatAat11B.1.1.1820.090909
ORF1ab/nsp4459D459DgaTgaC11B.1.1.2010.02439
ORF1ab/nsp4459D459NGatAat11B.1.1.2140.000055
ORF1ab/nsp4459D459NGatAat11B.1.1.2200.001859
ORF1ab/nsp4459D459DgaTgaC11B.1.1.2220.000204
ORF1ab/nsp4459D459delGAT---11B.1.1.2360.006897
ORF1ab/nsp4459D459DgaTgaC11B.1.1.280.000311
ORF1ab/nsp4459D459DgaTgaC11B.1.1.2940.001266
ORF1ab/nsp4459D459TGATACA11B.1.1.3060.000438
ORF1ab/nsp4459D459KGaTAaA11B.1.1.3060.000438
ORF1ab/nsp4459D459NGaTAaC11B.1.1.3480.000796
ORF1ab/nsp4459D459DgaTgaC11B.1.1.3970.002252
ORF1ab/nsp4459D459NGatAat11B.1.1.4020.011111
ORF1ab/nsp4459D459DgaTgaC11B.1.1.4480.002033
ORF1ab/nsp4459D459NGatAat11B.1.1.5190.00004
ORF1ab/nsp4459D459NGatAat11B.1.1.5230.001563
ORF1ab/nsp4459D459delGAT---11B.1.1.5280.004808
ORF1ab/nsp4459D459YGatTat11B.1.1.70.000001
ORF1ab/nsp4459D459NGatAat11B.1.1080.005814
ORF1ab/nsp4459D459DgaTgaC11B.1.1390.000733
ORF1ab/nsp4459D459VgAtgTt11B.1.1600.000031
ORF1ab/nsp4459D459delGAT---11B.1.1600.000031
ORF1ab/nsp4459D459EgaTgaA11B.1.1600.000031
ORF1ab/nsp4459D459HGatCat11B.1.1600.000031
ORF1ab/nsp4459D459KGaTAaA11B.1.1600.000031
ORF1ab/nsp4459D459YGatTat11B.1.1600.000031
ORF1ab/nsp4459D459NGatAat11B.1.1600.000031
ORF1ab/nsp4459D459GgAtgGt11B.1.1600.000031
ORF1ab/nsp4459D459TGATACA11B.1.1770.000013
ORF1ab/nsp4459D459DgaTgaC11B.1.177.120.000152
ORF1ab/nsp4459D459delGAT---11B.1.177.150.000631
ORF1ab/nsp4459D459delGAT---11B.1.177.160.000664
ORF1ab/nsp4459D459delGAT---11B.1.177.170.000821
ORF1ab/nsp4459D459del1gaTga-11B.1.177.180.00116
ORF1ab/nsp4459D459NGatAat11B.1.177.30.007634
ORF1ab/nsp4459D459NGatAat11B.1.177.440.000519
ORF1ab/nsp4459D459NGatAat11B.1.177.530.002392
ORF1ab/nsp4459D459delGAT---11B.1.177.630.002703
ORF1ab/nsp4459D459delGAT---11B.1.177.690.001484
ORF1ab/nsp4459D459delGAT---11B.1.177.760.002494
ORF1ab/nsp4459D459delGAT---11B.1.177.810.000189
ORF1ab/nsp4459D459delGAT---11B.1.177.870.000728
ORF1ab/nsp4459D459delGAT---11B.1.1790.003759
ORF1ab/nsp4459D459VgAtgTt11B.1.20.000009
ORF1ab/nsp4459D459NGatAat11B.1.2210.000071
ORF1ab/nsp4459D459DgaTgaC11B.1.2340.000132
ORF1ab/nsp4459D459NGatAat11B.1.2430.00007
ORF1ab/nsp4459D459DgaTgaC11B.1.3510.00003
ORF1ab/nsp4459D459DgaTgaC11B.1.351.20.000303
ORF1ab/nsp4459D459NGatAat11B.1.3560.001727
ORF1ab/nsp4459D459delGAT---11B.1.36.180.00042
ORF1ab/nsp4459D459NGatAat11B.1.3690.000285
ORF1ab/nsp4459D459NGatAat11B.1.3990.001934
ORF1ab/nsp4459D459delGAT---11B.1.4290.000024
ORF1ab/nsp4459D459delGAT---11B.1.4560.003268
ORF1ab/nsp4459D459DgaTgaC11B.1.4970.000315
ORF1ab/nsp4459D459DgaTgaC11B.1.5250.000113
ORF1ab/nsp4459D459NGatAat11B.1.5950.000261
ORF1ab/nsp4459D459NGatAat11B.1.6050.005952
ORF1ab/nsp4459D459AgAtgCt11B.1.617.20.000004
ORF1ab/nsp4459D459NGatAat11B.1.6210.000089
ORF1ab/nsp4459D459GgAtgGt11B.1.6210.000089
ORF1ab/nsp4459D459NGatAat11B.1.621.10.000506
ORF1ab/nsp4459D459DgaTgaC11B.30.000831
ORF1ab/nsp4459D459GgAtgGt11B.60.00091
ORF1ab/nsp4459D459YGatTat11C.300.001727
ORF1ab/nsp4459D459YGaTTaC11C.350.000774
ORF1ab/nsp4459D459DgaTgaC11C.370.000116
ORF1ab/nsp4459D459GgAtgGt11C.370.000116
ORF1ab/nsp4459D459DgaTgaC11C.37.10.002618
ORF1ab/nsp4459D459YGatTat11D.20.000075
ORF1ab/nsp4459D459delGAT---11P.1.10.10.00813
ORF1ab/nsp4459D459NGatAat11P.1.120.000484
ORF1ab/nsp4459D459DgaTgaC11P.1.130.000898
ORF1ab/nsp4459D459delGAT---11P.1.150.000232
ORF1ab/nsp4459D459DgaTgaC11P.1.150.000232
ORF1ab/nsp4459D459delGAT---11Q.10.000126
ORF1ab/nsp4459D459delGAT---11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.