CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 459 | D459N | D3222N | nonsyn | Gat | Aat | 3710 | 3700 | 0.997305 | 9929-9931 |
ORF1ab/nsp4 | 459 | D459N | D3222N | nonsyn | GaT | AaC | 3710 | 10 | 0.00269542 | 9929-9931 |
ORF1ab/nsp4 | 459 | D459D | D3222D | syn | gaT | gaC | 1196 | 1196 | 1 | 9929-9931 |
ORF1ab/nsp4 | 459 | D459T | D3222T | nonsyn | GAT | ACA | 193 | 191 | 0.989637 | 9929-9931 |
ORF1ab/nsp4 | 459 | D459T | D3222T | nonsyn | GAt | ACt | 193 | 2 | 0.0103627 | 9929-9931 |
ORF1ab/nsp4 | 459 | D459G | D3222G | nonsyn | gAt | gGt | 142 | 142 | 1 | 9929-9931 |
ORF1ab/nsp4 | 459 | D459del | D3222del | del | GAT | --- | 133 | 133 | 1 | 9929-9931 |
ORF1ab/nsp4 | 459 | D459Y | D3222Y | nonsyn | Gat | Tat | 18 | 17 | 0.944444 | 9929-9931 |
ORF1ab/nsp4 | 459 | D459Y | D3222Y | nonsyn | GaT | TaC | 18 | 1 | 0.0555556 | 9929-9931 |
ORF1ab/nsp4 | 459 | D459A | D3222A | nonsyn | gAt | gCt | 15 | 14 | 0.933333 | 9929-9931 |
ORF1ab/nsp4 | 459 | D459A | D3222A | nonsyn | gAT | gCA | 15 | 1 | 0.0666667 | 9929-9931 |
ORF1ab/nsp4 | 459 | D459E | D3222E | nonsyn | gaT | gaG | 7 | 4 | 0.571429 | 9929-9931 |
ORF1ab/nsp4 | 459 | D459E | D3222E | nonsyn | gaT | gaA | 7 | 3 | 0.428571 | 9929-9931 |
ORF1ab/nsp4 | 459 | D459H | D3222H | nonsyn | Gat | Cat | 3 | 3 | 1 | 9929-9931 |
ORF1ab/nsp4 | 459 | D459V | D3222V | nonsyn | gAt | gTt | 2 | 2 | 1 | 9929-9931 |
ORF1ab/nsp4 | 459 | D459K | D3222K | nonsyn | GaT | AaA | 2 | 2 | 1 | 9929-9931 |
ORF1ab/nsp4 | 459 | D459del1 | D3222del1 | del | gaT | ga- | 2 | 1 | 0.5 | 9929-9931 |
ORF1ab/nsp4 | 459 | D459del2 | D3222del2 | del | GAt | --t | 2 | 1 | 0.5 | 9929-9931 |
ORF1ab/nsp4 | 459 | D459del2 | D3222del2 | del | gAT | g-- | 2 | 1 | 0.5 | 9929-9931 |
ORF1ab/nsp4 | 459 | D459del1 | D3222del1 | del | Gat | -at | 2 | 1 | 0.5 | 9929-9931 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 3700 | 3710 | All | 0.000708 |
ORF1ab/nsp4 | 459 | D459N | GaT | AaC | 10 | 3710 | All | 0.000002 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1746 | 1747 | C.36.3 | 0.990357 |
ORF1ab/nsp4 | 459 | D459N | GaT | AaC | 1 | 1747 | C.36.3 | 0.000567 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1196 | 1196 | All | 0.000229 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 522 | 522 | C.36 | 0.47541 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 503 | 507 | B.1.1.7 | 0.00045 |
ORF1ab/nsp4 | 459 | D459N | GaT | AaC | 4 | 507 | B.1.1.7 | 0.000004 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 328 | 328 | C.36.3.1 | 0.891304 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 285 | 285 | B.1.1.7 | 0.000255 |
ORF1ab/nsp4 | 459 | D459T | GAT | ACA | 191 | 193 | All | 0.000037 |
ORF1ab/nsp4 | 459 | D459T | GAt | ACt | 2 | 193 | All | 0 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 176 | 176 | B.1.617.2 | 0.000663 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 142 | 142 | All | 0.000027 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 133 | 133 | All | 0.000025 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 132 | 132 | B.1 | 0.001209 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 126 | 126 | AY.43 | 0.000558 |
ORF1ab/nsp4 | 459 | D459T | GAT | ACA | 118 | 118 | B.1 | 0.001081 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 74 | 74 | AY.102 | 0.001962 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 72 | 72 | AY.103 | 0.000447 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 69 | 69 | B.1.243.2 | 1 |
ORF1ab/nsp4 | 459 | D459T | GAT | ACA | 65 | 66 | B.1.1 | 0.001179 |
ORF1ab/nsp4 | 459 | D459T | GAt | ACt | 1 | 66 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 49 | 49 | B.1.429 | 0.001153 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 46 | 46 | B.1.509 | 0.039827 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 44 | 44 | AY.4 | 0.000068 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 42 | 42 | B.1.1.7 | 0.000038 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 39 | 39 | AY.25 | 0.000235 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 38 | 38 | AY.103 | 0.000236 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 37 | 37 | AY.4 | 0.000058 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 33 | 33 | B.1.346 | 0.04325 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 30 | 30 | B.1.1 | 0.000544 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 24 | 24 | B.1.182 | 0.173913 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 20 | 20 | B.1 | 0.000183 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 20 | 20 | B.1.177 | 0.000263 |
ORF1ab/nsp4 | 459 | D459Y | Gat | Tat | 17 | 18 | All | 0.000003 |
ORF1ab/nsp4 | 459 | D459Y | GaT | TaC | 1 | 18 | All | 0 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 17 | 17 | AY.44 | 0.000103 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 16 | 16 | AY.6 | 0.000658 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 16 | 16 | B.1.177.43 | 0.023634 |
ORF1ab/nsp4 | 459 | D459A | gAt | gCt | 14 | 15 | All | 0.000003 |
ORF1ab/nsp4 | 459 | D459A | gAT | gCA | 1 | 15 | All | 0 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 14 | 14 | AY.3 | 0.000139 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 14 | 14 | B.1.239 | 0.017094 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 14 | 14 | B.1.617.2 | 0.000053 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 13 | 13 | B.1.2 | 0.000114 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 12 | 12 | B.1.1 | 0.000218 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 11 | 11 | AY.47 | 0.000342 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 10 | 10 | AY.100 | 0.00046 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 10 | 10 | AY.4.2 | 0.000217 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 10 | 10 | AY.98 | 0.00079 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 10 | 10 | B.4 | 0.022075 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 8 | 8 | AY.20 | 0.000311 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 8 | 8 | B.1.1.294 | 0.010127 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 8 | 8 | B.1.170 | 0.034483 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 8 | 8 | B.1.526 | 0.000188 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 8 | 8 | P.1.7 | 0.002554 |
ORF1ab/nsp4 | 459 | D459E | gaT | gaG | 4 | 7 | All | 0.000001 |
ORF1ab/nsp4 | 459 | D459E | gaT | gaA | 3 | 7 | All | 0.000001 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 7 | 7 | AY.92 | 0.002011 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 6 | 6 | C.17 | 0.333333 |
ORF1ab/nsp4 | 459 | D459A | gAt | gCt | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 5 | 5 | AY.46.4 | 0.000823 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 5 | 5 | B.1.23 | 0.030303 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 5 | 5 | C.35 | 0.00387 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 5 | 5 | C.39 | 0.09434 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 5 | 5 | P.5 | 0.068493 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 4 | 4 | AZ.2 | 0.003284 |
ORF1ab/nsp4 | 459 | D459Y | Gat | Tat | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp4 | 459 | D459E | gaT | gaG | 3 | 4 | B.1.1.7 | 0.000003 |
ORF1ab/nsp4 | 459 | D459E | gaT | gaA | 1 | 4 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 4 | 4 | B.1.177.4 | 0.000844 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 4 | 4 | B.1.499 | 0.004202 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp4 | 459 | D459H | Gat | Cat | 3 | 3 | All | 0.000001 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp4 | 459 | D459T | GAT | ACA | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp4 | 459 | D459Y | Gat | Tat | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp4 | 459 | D459Y | Gat | Tat | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp4 | 459 | D459T | GAT | ACA | 2 | 3 | B.1.160 | 0.000062 |
ORF1ab/nsp4 | 459 | D459T | GAt | ACt | 1 | 3 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 3 | 3 | B.1.177.20 | 0.004552 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 3 | 3 | B.1.239 | 0.003663 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 3 | 3 | B.6 | 0.00273 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 3 | 3 | C.16 | 0.003181 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 2 | 3 | P.1 | 0.000032 |
ORF1ab/nsp4 | 459 | D459N | GaT | AaC | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp4 | 459 | D459V | gAt | gTt | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 459 | D459K | GaT | AaA | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 459 | D459del1 | gaT | ga- | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 459 | D459del2 | GAt | --t | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 459 | D459del2 | gAT | g-- | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 459 | D459del1 | Gat | -at | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp4 | 459 | D459Y | Gat | Tat | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 2 | 2 | B.1.1.241 | 0.004141 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 2 | 2 | B.1.1.458 | 0.083333 |
ORF1ab/nsp4 | 459 | D459A | gAt | gCt | 1 | 2 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 459 | D459A | gAT | gCA | 1 | 2 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 459 | D459N | GaT | AaC | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 2 | 2 | B.1.324 | 0.00321 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 2 | 2 | B.1.448 | 0.005249 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 2 | 2 | B.1.81 | 0.042553 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | AS.1 | 0.009524 |
ORF1ab/nsp4 | 459 | D459E | gaT | gaG | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp4 | 459 | D459A | gAt | gCt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp4 | 459 | D459A | gAt | gCt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp4 | 459 | D459del2 | gAT | g-- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 459 | D459H | Gat | Cat | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp4 | 459 | D459A | gAt | gCt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 459 | D459H | Gat | Cat | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 459 | D459N | GaT | AaC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp4 | 459 | D459A | gAt | gCt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp4 | 459 | D459del1 | Gat | -at | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp4 | 459 | D459del2 | GAt | --t | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 459 | D459A | gAt | gCt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp4 | 459 | D459A | gAt | gCt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 459 | D459Y | Gat | Tat | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp4 | 459 | D459N | GaT | AaC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 459 | D459E | gaT | gaA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 459 | D459A | gAt | gCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | B.1.1.134 | 0.011364 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp4 | 459 | D459T | GAT | ACA | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B.1.1.182 | 0.090909 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | B.1.1.201 | 0.02439 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp4 | 459 | D459T | GAT | ACA | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp4 | 459 | D459K | GaT | AaA | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp4 | 459 | D459N | GaT | AaC | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp4 | 459 | D459Y | Gat | Tat | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B.1.108 | 0.005814 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp4 | 459 | D459V | gAt | gTt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 459 | D459E | gaT | gaA | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 459 | D459H | Gat | Cat | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 459 | D459K | GaT | AaA | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 459 | D459Y | Gat | Tat | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 459 | D459T | GAT | ACA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp4 | 459 | D459del1 | gaT | ga- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B.1.177.3 | 0.007634 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp4 | 459 | D459V | gAt | gTt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp4 | 459 | D459A | gAt | gCt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp4 | 459 | D459Y | Gat | Tat | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp4 | 459 | D459Y | GaT | TaC | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 459 | D459G | gAt | gGt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp4 | 459 | D459Y | Gat | Tat | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp4 | 459 | D459N | Gat | Aat | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp4 | 459 | D459D | gaT | gaC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 459 | D459del | GAT | --- | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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