CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 457 & Codon = gcG

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4457A457AA3220AsyngcAgcG7955370.6754729923-9925

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4457A457AgcAgcG537795All0.000103
ORF1ab/nsp4457A457AgcAgcG382382B.1.36.380.627258
ORF1ab/nsp4457A457AgcAgcG2455AY.40.000037
ORF1ab/nsp4457A457AgcAgcG2237B.1.1.70.00002
ORF1ab/nsp4457A457AgcAgcG2736AY.1030.000168
ORF1ab/nsp4457A457AgcAgcG2729B.1.20.000238
ORF1ab/nsp4457A457AgcAgcG213P.10.000032
ORF1ab/nsp4457A457AgcAgcG1112B.1.2210.000781
ORF1ab/nsp4457A457AgcAgcG99AY.260.000255
ORF1ab/nsp4457A457AgcAgcG88B.1.360.001167
ORF1ab/nsp4457A457AgcAgcG24AY.1020.000053
ORF1ab/nsp4457A457AgcAgcG14B.1.617.20.000004
ORF1ab/nsp4457A457AgcAgcG23AY.250.000012
ORF1ab/nsp4457A457AgcAgcG13B.1.1770.000013
ORF1ab/nsp4457A457AgcAgcG23B.1.5260.000047
ORF1ab/nsp4457A457AgcAgcG13P.1.140.000048
ORF1ab/nsp4457A457AgcAgcG12AY.46.60.000072
ORF1ab/nsp4457A457AgcAgcG12AY.480.000465
ORF1ab/nsp4457A457AgcAgcG12B.10.000009
ORF1ab/nsp4457A457AgcAgcG12B.1.10.000018
ORF1ab/nsp4457A457AgcAgcG12B.1.1.5190.00004
ORF1ab/nsp4457A457AgcAgcG22B.1.466.20.000782
ORF1ab/nsp4457A457AgcAgcG11AY.30.00001
ORF1ab/nsp4457A457AgcAgcG11AY.4.20.000022
ORF1ab/nsp4457A457AgcAgcG11AY.420.00004
ORF1ab/nsp4457A457AgcAgcG11B.1.160.150.00495
ORF1ab/nsp4457A457AgcAgcG11B.1.177.60.000977
ORF1ab/nsp4457A457AgcAgcG11B.1.177.730.000566
ORF1ab/nsp4457A457AgcAgcG11B.1.3850.010638
ORF1ab/nsp4457A457AgcAgcG11B.1.5250.000113
ORF1ab/nsp4457A457AgcAgcG11B.1.5500.013699

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.