CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 457 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4457A457delA3220deldelGCA---14014019923-9925

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4457A457delGCA---140140All0.000027
ORF1ab/nsp4457A457delGCA---4444B.1.1.70.000039
ORF1ab/nsp4457A457delGCA---99B.10.000082
ORF1ab/nsp4457A457delGCA---77AY.40.000011
ORF1ab/nsp4457A457delGCA---66AY.750.000336
ORF1ab/nsp4457A457delGCA---66B.1.1770.000079
ORF1ab/nsp4457A457delGCA---55AY.4.50.000537
ORF1ab/nsp4457A457delGCA---55B.1.617.20.000019
ORF1ab/nsp4457A457delGCA---44AY.430.000018
ORF1ab/nsp4457A457delGCA---44B.1.10.000073
ORF1ab/nsp4457A457delGCA---44B.1.177.40.000844
ORF1ab/nsp4457A457delGCA---44P.1.120.001936
ORF1ab/nsp4457A457delGCA---33AY.390.000074
ORF1ab/nsp4457A457delGCA---33P.10.000047
ORF1ab/nsp4457A457delGCA---22AY.520.001629
ORF1ab/nsp4457A457delGCA---22B.1.1.4090.005666
ORF1ab/nsp4457A457delGCA---22B.1.177.170.001642
ORF1ab/nsp4457A457delGCA---22B.1.177.540.001213
ORF1ab/nsp4457A457delGCA---11AY.1080.001103
ORF1ab/nsp4457A457delGCA---11AY.1200.000037
ORF1ab/nsp4457A457delGCA---11AY.190.00114
ORF1ab/nsp4457A457delGCA---11AY.250.000006
ORF1ab/nsp4457A457delGCA---11AY.260.000028
ORF1ab/nsp4457A457delGCA---11AY.4.2.10.000149
ORF1ab/nsp4457A457delGCA---11AY.50.000021
ORF1ab/nsp4457A457delGCA---11AY.60.000041
ORF1ab/nsp4457A457delGCA---11AY.670.000464
ORF1ab/nsp4457A457delGCA---11AY.720.001361
ORF1ab/nsp4457A457delGCA---11AY.9.20.000037
ORF1ab/nsp4457A457delGCA---11B.1.1.1390.022727
ORF1ab/nsp4457A457delGCA---11B.1.1.2360.006897
ORF1ab/nsp4457A457delGCA---11B.1.1.5280.004808
ORF1ab/nsp4457A457delGCA---11B.1.1600.000031
ORF1ab/nsp4457A457delGCA---11B.1.177.150.000631
ORF1ab/nsp4457A457delGCA---11B.1.177.160.000664
ORF1ab/nsp4457A457delGCA---11B.1.177.690.001484
ORF1ab/nsp4457A457delGCA---11B.1.177.810.000189
ORF1ab/nsp4457A457delGCA---11B.1.177.870.000728
ORF1ab/nsp4457A457delGCA---11B.1.1790.003759
ORF1ab/nsp4457A457delGCA---11B.1.36.180.00042
ORF1ab/nsp4457A457delGCA---11B.1.4290.000024
ORF1ab/nsp4457A457delGCA---11B.1.4560.003268
ORF1ab/nsp4457A457delGCA---11P.1.10.10.00813
ORF1ab/nsp4457A457delGCA---11P.1.150.000232
ORF1ab/nsp4457A457delGCA---11Q.10.000126
ORF1ab/nsp4457A457delGCA---11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.