CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 449

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4449N449NN3212NsynaaTaaC1376137619899-9901
ORF1ab/nsp4449N449TN3212TnonsynaAtaCt2662650.9962419899-9901
ORF1ab/nsp4449N449TN3212TnonsynaATaCC26610.00375949899-9901
ORF1ab/nsp4449N449delN3212deldelAAT---11511519899-9901
ORF1ab/nsp4449N449SN3212SnonsynaAtaGt68670.9852949899-9901
ORF1ab/nsp4449N449SN3212SnonsynAAtTCt6810.01470599899-9901
ORF1ab/nsp4449N449KN3212KnonsynaaTaaG27160.5925939899-9901
ORF1ab/nsp4449N449KN3212KnonsynaaTaaA27110.4074079899-9901
ORF1ab/nsp4449N449YN3212YnonsynAatTat101019899-9901
ORF1ab/nsp4449N449IN3212InonsynaAtaTt9919899-9901
ORF1ab/nsp4449N449del1N3212del1delaaTaa-840.59899-9901
ORF1ab/nsp4449N449del1N3212del1delAat-at840.59899-9901
ORF1ab/nsp4449N449DN3212DnonsynAatGat4419899-9901
ORF1ab/nsp4449N449del2N3212del2delaATa--210.59899-9901
ORF1ab/nsp4449N449del2N3212del2delAAt--t210.59899-9901
ORF1ab/nsp4449N449GN3212GnonsynAAtGGt1119899-9901
ORF1ab/nsp4449N449FN3212FnonsynAAtTTt1119899-9901
ORF1ab/nsp4449N449CN3212CnonsynAATTGC1119899-9901

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4449N449NaaTaaC13761376All0.000263
ORF1ab/nsp4449N449NaaTaaC529529AY.430.002344
ORF1ab/nsp4449N449TaAtaCt265266All0.000051
ORF1ab/nsp4449N449TaATaCC1266All0
ORF1ab/nsp4449N449TaAtaCt245245B.1.1.2431
ORF1ab/nsp4449N449NaaTaaC240240AY.440.001461
ORF1ab/nsp4449N449NaaTaaC230230B.1.1.70.000206
ORF1ab/nsp4449N449NaaTaaC126126B.1.617.20.000474
ORF1ab/nsp4449N449delAAT---115115All0.000022
ORF1ab/nsp4449N449SaAtaGt6768All0.000013
ORF1ab/nsp4449N449SAAtTCt168All0
ORF1ab/nsp4449N449SaAtaGt3838AY.1190.001342
ORF1ab/nsp4449N449delAAT---3434B.1.1.70.00003
ORF1ab/nsp4449N449KaaTaaG1627All0.000003
ORF1ab/nsp4449N449KaaTaaA1127All0.000002
ORF1ab/nsp4449N449NaaTaaC2525AY.1060.008372
ORF1ab/nsp4449N449NaaTaaC1818AY.99.20.001659
ORF1ab/nsp4449N449NaaTaaC1515P.10.000236
ORF1ab/nsp4449N449NaaTaaC1414AY.1030.000087
ORF1ab/nsp4449N449NaaTaaC1414AY.40.000022
ORF1ab/nsp4449N449KaaTaaG1414B.1.3150.084848
ORF1ab/nsp4449N449NaaTaaC1414B.1.4160.017766
ORF1ab/nsp4449N449NaaTaaC1111AT.10.05641
ORF1ab/nsp4449N449NaaTaaC1111AY.1090.008136
ORF1ab/nsp4449N449YAatTat1010All0.000002
ORF1ab/nsp4449N449delAAT---1010B.10.000092
ORF1ab/nsp4449N449IaAtaTt99All0.000002
ORF1ab/nsp4449N449del1Aat-at48All0.000001
ORF1ab/nsp4449N449del1aaTaa-48All0.000001
ORF1ab/nsp4449N449NaaTaaC88B.1.10.000145
ORF1ab/nsp4449N449delAAT---77AY.750.000392
ORF1ab/nsp4449N449NaaTaaC77B.1.4290.000165
ORF1ab/nsp4449N449delAAT---77P.10.00011
ORF1ab/nsp4449N449NaaTaaC66AY.1020.000159
ORF1ab/nsp4449N449NaaTaaC66AY.230.000418
ORF1ab/nsp4449N449NaaTaaC66AY.290.000095
ORF1ab/nsp4449N449SaAtaGt55AY.1130.000712
ORF1ab/nsp4449N449NaaTaaC55AY.1190.000177
ORF1ab/nsp4449N449KaaTaaA55AY.4.50.000537
ORF1ab/nsp4449N449NaaTaaC55B.10.000046
ORF1ab/nsp4449N449delAAT---55B.1.10.000091
ORF1ab/nsp4449N449TaAtaCt55B.1.10.000091
ORF1ab/nsp4449N449TaAtaCt55B.1.416.10.007812
ORF1ab/nsp4449N449delAAT---55P.1.120.00242
ORF1ab/nsp4449N449DAatGat44All0.000001
ORF1ab/nsp4449N449NaaTaaC44AY.250.000024
ORF1ab/nsp4449N449SaAtaGt44AY.340.000388
ORF1ab/nsp4449N449NaaTaaC44AY.390.000099
ORF1ab/nsp4449N449delAAT---44AY.4.50.00043
ORF1ab/nsp4449N449NaaTaaC44AY.460.000416
ORF1ab/nsp4449N449NaaTaaC44AY.610.000419
ORF1ab/nsp4449N449NaaTaaC44AY.630.001547
ORF1ab/nsp4449N449delAAT---44B.1.1770.000053
ORF1ab/nsp4449N449NaaTaaC44B.1.3510.000119
ORF1ab/nsp4449N449NaaTaaC44B.1.360.000584
ORF1ab/nsp4449N449NaaTaaC33AY.30.00003
ORF1ab/nsp4449N449delAAT---33AY.390.000074
ORF1ab/nsp4449N449KaaTaaA33AY.40.000005
ORF1ab/nsp4449N449NaaTaaC33AY.60.000123
ORF1ab/nsp4449N449NaaTaaC33B.1.1.2840.000322
ORF1ab/nsp4449N449NaaTaaC33B.1.20.000026
ORF1ab/nsp4449N449NaaTaaC33B.1.2210.000213
ORF1ab/nsp4449N449del1aaTaa-33B.1.5250.000339
ORF1ab/nsp4449N449TaAtaCt33B.1.780.025641
ORF1ab/nsp4449N449del2aATa--12All0
ORF1ab/nsp4449N449del2AAt--t12All0
ORF1ab/nsp4449N449SaAtaGt22AY.1110.000366
ORF1ab/nsp4449N449NaaTaaC22AY.1160.000574
ORF1ab/nsp4449N449SaAtaGt22AY.250.000012
ORF1ab/nsp4449N449NaaTaaC22AY.260.000057
ORF1ab/nsp4449N449NaaTaaC22AY.360.000296
ORF1ab/nsp4449N449delAAT---22AY.40.000003
ORF1ab/nsp4449N449NaaTaaC22AY.4.20.000043
ORF1ab/nsp4449N449delAAT---22AY.430.000009
ORF1ab/nsp4449N449NaaTaaC22AY.450.000243
ORF1ab/nsp4449N449delAAT---22AY.520.001629
ORF1ab/nsp4449N449NaaTaaC22AY.680.000547
ORF1ab/nsp4449N449NaaTaaC22AY.7.10.000225
ORF1ab/nsp4449N449NaaTaaC22B.1.1.2690.002706
ORF1ab/nsp4449N449delAAT---22B.1.1.4090.005666
ORF1ab/nsp4449N449IaAtaTt22B.1.1.70.000002
ORF1ab/nsp4449N449YAatTat22B.1.1.70.000002
ORF1ab/nsp4449N449delAAT---22B.1.177.40.000422
ORF1ab/nsp4449N449SaAtaGt22B.1.617.20.000008
ORF1ab/nsp4449N449YAatTat22P.1.10.000635
ORF1ab/nsp4449N449TaAtaCt22P.1.170.000324
ORF1ab/nsp4449N449YAatTat11A0.000387
ORF1ab/nsp4449N449delAAT---11A.210.00277
ORF1ab/nsp4449N449GAAtGGt11All0
ORF1ab/nsp4449N449FAAtTTt11All0
ORF1ab/nsp4449N449CAATTGC11All0
ORF1ab/nsp4449N449delAAT---11AY.1000.000046
ORF1ab/nsp4449N449NaaTaaC11AY.1050.000643
ORF1ab/nsp4449N449delAAT---11AY.1080.001103
ORF1ab/nsp4449N449SaAtaGt11AY.1100.000113
ORF1ab/nsp4449N449NaaTaaC11AY.1170.000085
ORF1ab/nsp4449N449NaaTaaC11AY.1180.000063
ORF1ab/nsp4449N449SaAtaGt11AY.1200.000037
ORF1ab/nsp4449N449delAAT---11AY.190.00114
ORF1ab/nsp4449N449NaaTaaC11AY.200.000039
ORF1ab/nsp4449N449KaaTaaA11AY.250.000006
ORF1ab/nsp4449N449delAAT---11AY.250.000006
ORF1ab/nsp4449N449delAAT---11AY.260.000028
ORF1ab/nsp4449N449NaaTaaC11AY.270.000065
ORF1ab/nsp4449N449NaaTaaC11AY.29.10.000221
ORF1ab/nsp4449N449delAAT---11AY.30.00001
ORF1ab/nsp4449N449NaaTaaC11AY.330.000067
ORF1ab/nsp4449N449TaATaCC11AY.390.000025
ORF1ab/nsp4449N449SaAtaGt11AY.39.10.00004
ORF1ab/nsp4449N449YAatTat11AY.40.000002
ORF1ab/nsp4449N449SaAtaGt11AY.4.20.000022
ORF1ab/nsp4449N449del1Aat-at11AY.4.2.10.000149
ORF1ab/nsp4449N449delAAT---11AY.4.2.10.000149
ORF1ab/nsp4449N449SaAtaGt11AY.430.000004
ORF1ab/nsp4449N449DAatGat11AY.440.000006
ORF1ab/nsp4449N449SaAtaGt11AY.460.000104
ORF1ab/nsp4449N449NaaTaaC11AY.46.20.000635
ORF1ab/nsp4449N449NaaTaaC11AY.46.60.000072
ORF1ab/nsp4449N449NaaTaaC11AY.470.000031
ORF1ab/nsp4449N449NaaTaaC11AY.50.000021
ORF1ab/nsp4449N449delAAT---11AY.60.000041
ORF1ab/nsp4449N449delAAT---11AY.620.000436
ORF1ab/nsp4449N449NaaTaaC11AY.740.000116
ORF1ab/nsp4449N449NaaTaaC11AY.840.000437
ORF1ab/nsp4449N449KaaTaaA11AY.870.000833
ORF1ab/nsp4449N449NaaTaaC11AY.870.000833
ORF1ab/nsp4449N449SaAtaGt11AY.9.20.000037
ORF1ab/nsp4449N449delAAT---11AY.9.20.000037
ORF1ab/nsp4449N449NaaTaaC11AY.920.000287
ORF1ab/nsp4449N449KaaTaaA11AY.930.000273
ORF1ab/nsp4449N449NaaTaaC11AY.990.001049
ORF1ab/nsp4449N449FAAtTTt11B.10.000009
ORF1ab/nsp4449N449KaaTaaG11B.10.000009
ORF1ab/nsp4449N449del1Aat-at11B.10.000009
ORF1ab/nsp4449N449IaAtaTt11B.10.000009
ORF1ab/nsp4449N449DAatGat11B.10.000009
ORF1ab/nsp4449N449IaAtaTt11B.1.10.000018
ORF1ab/nsp4449N449delAAT---11B.1.1.1390.022727
ORF1ab/nsp4449N449TaAtaCt11B.1.1.1920.002309
ORF1ab/nsp4449N449NaaTaaC11B.1.1.2140.000055
ORF1ab/nsp4449N449IaAtaTt11B.1.1.250.000569
ORF1ab/nsp4449N449TaAtaCt11B.1.1.3090.005848
ORF1ab/nsp4449N449NaaTaaC11B.1.1.3170.000412
ORF1ab/nsp4449N449delAAT---11B.1.1.3480.000796
ORF1ab/nsp4449N449NaaTaaC11B.1.1.3700.012658
ORF1ab/nsp4449N449delAAT---11B.1.1.5280.004808
ORF1ab/nsp4449N449del2aATa--11B.1.1.70.000001
ORF1ab/nsp4449N449CAATTGC11B.1.1.70.000001
ORF1ab/nsp4449N449SaAtaGt11B.1.1.70.000001
ORF1ab/nsp4449N449del1aaTaa-11B.1.1.70.000001
ORF1ab/nsp4449N449TaAtaCt11B.1.1.70.000001
ORF1ab/nsp4449N449NaaTaaC11B.1.130.002375
ORF1ab/nsp4449N449YAatTat11B.1.1390.000733
ORF1ab/nsp4449N449SaAtaGt11B.1.1770.000013
ORF1ab/nsp4449N449DAatGat11B.1.1770.000013
ORF1ab/nsp4449N449del2AAt--t11B.1.1770.000013
ORF1ab/nsp4449N449GAAtGGt11B.1.1770.000013
ORF1ab/nsp4449N449del1Aat-at11B.1.1770.000013
ORF1ab/nsp4449N449delAAT---11B.1.177.150.000631
ORF1ab/nsp4449N449delAAT---11B.1.177.160.000664
ORF1ab/nsp4449N449delAAT---11B.1.177.540.000606
ORF1ab/nsp4449N449SaAtaGt11B.1.177.70.000165
ORF1ab/nsp4449N449NaaTaaC11B.1.177.760.002494
ORF1ab/nsp4449N449NaaTaaC11B.1.177.80.000752
ORF1ab/nsp4449N449NaaTaaC11B.1.177.810.000189
ORF1ab/nsp4449N449delAAT---11B.1.177.810.000189
ORF1ab/nsp4449N449delAAT---11B.1.1790.003759
ORF1ab/nsp4449N449del1Aat-at11B.1.20.000009
ORF1ab/nsp4449N449delAAT---11B.1.258.30.001675
ORF1ab/nsp4449N449IaAtaTt11B.1.351.30.000876
ORF1ab/nsp4449N449delAAT---11B.1.360.000146
ORF1ab/nsp4449N449YAatTat11B.1.36.160.001425
ORF1ab/nsp4449N449delAAT---11B.1.4290.000024
ORF1ab/nsp4449N449IaAtaTt11B.1.4460.02
ORF1ab/nsp4449N449delAAT---11B.1.4560.003268
ORF1ab/nsp4449N449IaAtaTt11B.1.4650.003802
ORF1ab/nsp4449N449NaaTaaC11B.1.466.20.000391
ORF1ab/nsp4449N449YAatTat11B.1.5760.000907
ORF1ab/nsp4449N449SaAtaGt11B.1.5960.000087
ORF1ab/nsp4449N449NaaTaaC11B.1.617.10.000129
ORF1ab/nsp4449N449YAatTat11B.1.617.20.000004
ORF1ab/nsp4449N449TaAtaCt11B.1.617.20.000004
ORF1ab/nsp4449N449SaAtaGt11B.1.6360.006711
ORF1ab/nsp4449N449TaAtaCt11C.140.004329
ORF1ab/nsp4449N449KaaTaaG11C.350.000774
ORF1ab/nsp4449N449SaAtaGt11C.370.000116
ORF1ab/nsp4449N449SaAtaGt11C.380.008065
ORF1ab/nsp4449N449IaAtaTt11D.20.000075
ORF1ab/nsp4449N449SAAtTCt11P.1.10.000318
ORF1ab/nsp4449N449delAAT---11P.1.10.10.00813
ORF1ab/nsp4449N449DAatGat11P.1.120.000484
ORF1ab/nsp4449N449NaaTaaC11P.1.120.000484
ORF1ab/nsp4449N449delAAT---11P.1.150.000232
ORF1ab/nsp4449N449delAAT---11Q.10.000126
ORF1ab/nsp4449N449NaaTaaC11Q.80.000165