CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 446 & Codon = Tct

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4446A446SA3209SnonsynGctTct44644619890-9892

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4446A446SGctTct446446All0.000085
ORF1ab/nsp4446A446SGctTct7373B.1.1.531
ORF1ab/nsp4446A446SGctTct5858B.1.617.20.000218
ORF1ab/nsp4446A446SGctTct5454B.1.10.00098
ORF1ab/nsp4446A446SGctTct4646B.1.20.000405
ORF1ab/nsp4446A446SGctTct2828AY.40.000044
ORF1ab/nsp4446A446SGctTct2727B.1.1.70.000024
ORF1ab/nsp4446A446SGctTct2323AY.1030.000143
ORF1ab/nsp4446A446SGctTct2020B.10.000183
ORF1ab/nsp4446A446SGctTct1313AY.430.000058
ORF1ab/nsp4446A446SGctTct1212AY.250.000072
ORF1ab/nsp4446A446SGctTct1111AY.440.000067
ORF1ab/nsp4446A446SGctTct66B.1.1.520.073171
ORF1ab/nsp4446A446SGctTct66B.1.2410.00487
ORF1ab/nsp4446A446SGctTct55B.1.4270.000252
ORF1ab/nsp4446A446SGctTct44P.10.000063
ORF1ab/nsp4446A446SGctTct33AY.290.000047
ORF1ab/nsp4446A446SGctTct33AY.30.00003
ORF1ab/nsp4446A446SGctTct33AY.330.0002
ORF1ab/nsp4446A446SGctTct33AY.390.000074
ORF1ab/nsp4446A446SGctTct33B.1.1.3980.009677
ORF1ab/nsp4446A446SGctTct33D.20.000225
ORF1ab/nsp4446A446SGctTct22A0.000774
ORF1ab/nsp4446A446SGctTct22AY.1020.000053
ORF1ab/nsp4446A446SGctTct22AY.1100.000225
ORF1ab/nsp4446A446SGctTct22AY.1190.000071
ORF1ab/nsp4446A446SGctTct22B.1.1.3060.000877
ORF1ab/nsp4446A446SGctTct22B.1.1.390.001019
ORF1ab/nsp4446A446SGctTct22B.1.1.5190.000079
ORF1ab/nsp4446A446SGctTct22B.1.1110.00235
ORF1ab/nsp4446A446SGctTct22B.1.4290.000047
ORF1ab/nsp4446A446SGctTct22B.1.5600.009259
ORF1ab/nsp4446A446SGctTct22P.20.000373
ORF1ab/nsp4446A446SGctTct11A.2.50.000499
ORF1ab/nsp4446A446SGctTct11AS.10.009524
ORF1ab/nsp4446A446SGctTct11AY.1050.000643
ORF1ab/nsp4446A446SGctTct11AY.230.00007
ORF1ab/nsp4446A446SGctTct11AY.4.20.000022
ORF1ab/nsp4446A446SGctTct11AY.420.00004
ORF1ab/nsp4446A446SGctTct11AY.450.000122
ORF1ab/nsp4446A446SGctTct11AY.980.000079
ORF1ab/nsp4446A446SGctTct11B0.000128
ORF1ab/nsp4446A446SGctTct11B.1.1.1530.001095
ORF1ab/nsp4446A446SGctTct11B.1.1.3770.001381
ORF1ab/nsp4446A446SGctTct11B.1.1.4090.002833
ORF1ab/nsp4446A446SGctTct11B.1.1770.000013
ORF1ab/nsp4446A446SGctTct11B.1.177.40.000211
ORF1ab/nsp4446A446SGctTct11B.1.177.480.003125
ORF1ab/nsp4446A446SGctTct11B.1.177.560.000668
ORF1ab/nsp4446A446SGctTct11B.1.360.000146
ORF1ab/nsp4446A446SGctTct11B.1.4560.003268
ORF1ab/nsp4446A446SGctTct11B.1.780.008547
ORF1ab/nsp4446A446SGctTct11B.400.000364