CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 438 | L438P | L3201P | nonsyn | cTt | cCt | 67797 | 67797 | 1 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438F | L3201F | nonsyn | Ctt | Ttt | 1294 | 1293 | 0.999227 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438F | L3201F | nonsyn | CtT | TtC | 1294 | 1 | 0.000772798 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438I | L3201I | nonsyn | Ctt | Att | 411 | 411 | 1 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438L | L3201L | syn | ctT | ctC | 316 | 295 | 0.933544 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438L | L3201L | syn | ctT | ctA | 316 | 17 | 0.0537975 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438L | L3201L | syn | CtT | TtA | 316 | 2 | 0.00632911 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438L | L3201L | syn | CtT | TtG | 316 | 1 | 0.00316456 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438L | L3201L | syn | ctT | ctG | 316 | 1 | 0.00316456 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438del | L3201del | del | CTT | --- | 171 | 171 | 1 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438H | L3201H | nonsyn | cTt | cAt | 36 | 33 | 0.916667 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438H | L3201H | nonsyn | cTT | cAC | 36 | 3 | 0.0833333 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438S | L3201S | nonsyn | CTt | TCt | 29 | 29 | 1 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438R | L3201R | nonsyn | cTt | cGt | 24 | 24 | 1 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438V | L3201V | nonsyn | Ctt | Gtt | 21 | 19 | 0.904762 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438V | L3201V | nonsyn | CtT | GtA | 21 | 2 | 0.0952381 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438del1 | L3201del1 | del | cTt | c-t | 5 | 3 | 0.6 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438del1 | L3201del1 | del | Ctt | -tt | 5 | 2 | 0.4 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438C | L3201C | nonsyn | CTT | TGC | 4 | 4 | 1 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438G | L3201G | nonsyn | CTt | GGt | 1 | 1 | 1 | 9866-9868 |
ORF1ab/nsp4 | 438 | L438K | L3201K | nonsyn | CTT | AAA | 1 | 1 | 1 | 9866-9868 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 67797 | 67797 | All | 0.012967 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 42274 | 42274 | B.1.526 | 0.99363 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 13595 | 13595 | B.1.637 | 0.993423 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 8552 | 8552 | C.37 | 0.992572 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1293 | 1294 | All | 0.000247 |
ORF1ab/nsp4 | 438 | L438F | CtT | TtC | 1 | 1294 | All | 0 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1102 | 1102 | B.1 | 0.010094 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 580 | 580 | P.3 | 0.92504 |
ORF1ab/nsp4 | 438 | L438I | Ctt | Att | 411 | 411 | All | 0.000079 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 362 | 362 | C.37.1 | 0.947644 |
ORF1ab/nsp4 | 438 | L438I | Ctt | Att | 357 | 357 | B.1.160 | 0.011134 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 295 | 316 | All | 0.000056 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctA | 17 | 316 | All | 0.000003 |
ORF1ab/nsp4 | 438 | L438L | CtT | TtA | 2 | 316 | All | 0 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctG | 1 | 316 | All | 0 |
ORF1ab/nsp4 | 438 | L438L | CtT | TtG | 1 | 316 | All | 0 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 302 | 302 | B.1.1.214 | 0.016748 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 268 | 268 | B.1.2 | 0.00236 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 260 | 260 | P.4 | 0.988593 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 233 | 233 | AY.103 | 0.001447 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 231 | 231 | B.1.258 | 0.015372 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 171 | 171 | All | 0.000033 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 152 | 152 | B.1.1.7 | 0.000136 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 127 | 127 | B.1.1 | 0.002304 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 98 | 98 | C.1.2 | 0.417021 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 68 | 68 | B.1.177.4 | 0.014352 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 59 | 59 | B.1.1.7 | 0.000053 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 55 | 55 | AY.83 | 0.094828 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 48 | 48 | AY.4 | 0.000075 |
ORF1ab/nsp4 | 438 | L438H | cTt | cAt | 33 | 36 | All | 0.000006 |
ORF1ab/nsp4 | 438 | L438H | cTT | cAC | 3 | 36 | All | 0.000001 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 36 | 36 | B.1.1.7 | 0.000032 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 36 | 36 | B.1.623 | 0.019313 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 35 | 35 | B.1.509 | 0.030303 |
ORF1ab/nsp4 | 438 | L438S | CTt | TCt | 29 | 29 | All | 0.000006 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 29 | 29 | AY.4 | 0.000045 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 29 | 29 | B.1.308 | 1 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 28 | 28 | B.1.177.73 | 0.015855 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 26 | 26 | C.39 | 0.490566 |
ORF1ab/nsp4 | 438 | L438R | cTt | cGt | 24 | 24 | All | 0.000005 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 23 | 23 | B.1.177.7 | 0.003792 |
ORF1ab/nsp4 | 438 | L438S | CTt | TCt | 23 | 23 | B.1.526 | 0.000541 |
ORF1ab/nsp4 | 438 | L438V | Ctt | Gtt | 19 | 21 | All | 0.000004 |
ORF1ab/nsp4 | 438 | L438V | CtT | GtA | 2 | 21 | All | 0 |
ORF1ab/nsp4 | 438 | L438H | cTt | cAt | 17 | 19 | B.1 | 0.000156 |
ORF1ab/nsp4 | 438 | L438H | cTT | cAC | 2 | 19 | B.1 | 0.000018 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 19 | 19 | B.1.1 | 0.000345 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 18 | 18 | B.1.2 | 0.000158 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 18 | 18 | B.1.214.2 | 0.010791 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 17 | 17 | AY.73 | 0.011311 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 17 | 17 | B.1.1.39 | 0.008665 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 17 | 17 | C.36.3.1 | 0.046196 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 16 | 16 | B.1 | 0.000147 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 16 | 16 | B.1.617.2 | 0.00006 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 16 | 16 | P.1 | 0.000252 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 14 | 15 | AY.44 | 0.000085 |
ORF1ab/nsp4 | 438 | L438F | CtT | TtC | 1 | 15 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 14 | 14 | AY.103 | 0.000087 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 14 | 14 | AY.43 | 0.000062 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 14 | 14 | B | 0.001789 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 10 | 13 | B.1.1.7 | 0.000009 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctG | 1 | 13 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 438 | L438L | CtT | TtG | 1 | 13 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctA | 1 | 13 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 13 | 13 | B.1.160 | 0.000405 |
ORF1ab/nsp4 | 438 | L438I | Ctt | Att | 13 | 13 | B.1.2 | 0.000114 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 12 | 12 | B.1 | 0.00011 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 12 | 12 | B.1.177 | 0.000158 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 12 | 12 | B.1.427 | 0.000606 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 12 | 12 | B.1.575 | 0.003641 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 12 | 12 | P.1 | 0.000189 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 11 | 11 | AY.3 | 0.000109 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 11 | 11 | AY.4.5 | 0.001182 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 10 | 10 | B.1.1.507 | 0.086957 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 10 | 10 | B.1.639 | 0.217391 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 10 | 10 | P.1.15 | 0.002323 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 9 | 9 | B.1.1.1 | 0.00294 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 9 | 9 | B.1.638 | 0.473684 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 9 | 9 | C.1 | 0.021531 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 8 | 8 | AY.75 | 0.000448 |
ORF1ab/nsp4 | 438 | L438I | Ctt | Att | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 8 | 8 | B.1.1.348 | 0.006369 |
ORF1ab/nsp4 | 438 | L438V | Ctt | Gtt | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 8 | 8 | B.1.111 | 0.009401 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 7 | 7 | AY.106 | 0.002344 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 7 | 7 | AY.99.2 | 0.000645 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 7 | 7 | B.1.1.25 | 0.00398 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 7 | 7 | B.1.1.312 | 0.013384 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp4 | 438 | L438I | Ctt | Att | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp4 | 438 | L438I | Ctt | Att | 7 | 7 | B.1.471 | 0.019126 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 7 | 7 | B.1.625 | 0.016471 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 7 | 7 | B.1.636 | 0.04698 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 7 | 7 | P.1.12 | 0.003388 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 6 | 6 | B.1.1.1 | 0.00196 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 6 | 6 | B.1.1.133 | 0.050847 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 6 | 6 | B.1.1.372 | 0.004132 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 6 | 6 | B.1.240 | 0.001293 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp4 | 438 | L438del1 | cTt | c-t | 3 | 5 | All | 0.000001 |
ORF1ab/nsp4 | 438 | L438del1 | Ctt | -tt | 2 | 5 | All | 0 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 4 | 5 | B.1.1 | 0.000073 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctA | 1 | 5 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 5 | 5 | B.1.577 | 0.003436 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 5 | 5 | C.14 | 0.021645 |
ORF1ab/nsp4 | 438 | L438C | CTT | TGC | 4 | 4 | All | 0.000001 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp4 | 438 | L438R | cTt | cGt | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 4 | 4 | B.1.1.316 | 0.0037 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 4 | 4 | B.1.111 | 0.0047 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 4 | 4 | B.1.435 | 0.045455 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 4 | 4 | B.1.618 | 0.016129 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctA | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp4 | 438 | L438R | cTt | cGt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctA | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp4 | 438 | L438R | cTt | cGt | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp4 | 438 | L438H | cTt | cAt | 3 | 3 | B.1.1.354 | 0.013158 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 3 | 3 | B.1.1.47 | 0.016043 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 3 | 3 | B.1.1.528 | 0.014423 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp4 | 438 | L438I | Ctt | Att | 3 | 3 | B.1.195 | 0.015075 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 3 | 3 | B.1.243.1 | 0.066667 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 3 | 3 | B.1.523 | 0.007353 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 3 | 3 | B.1.530 | 0.021429 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 3 | 3 | B.1.544 | 0.018072 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 3 | 3 | B.1.549 | 0.021583 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp4 | 438 | L438I | Ctt | Att | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 3 | 3 | P.1.1 | 0.000953 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp4 | 438 | L438I | Ctt | Att | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 438 | L438H | cTt | cAt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctA | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp4 | 438 | L438I | Ctt | Att | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp4 | 438 | L438V | Ctt | Gtt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp4 | 438 | L438V | Ctt | Gtt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | B.1.1.243 | 0.008163 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 2 | 2 | B.1.1.524 | 0.041667 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 2 | 2 | B.1.214 | 0.007326 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 2 | 2 | B.1.336 | 0.004878 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 2 | 2 | B.1.413 | 0.008511 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctA | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | B.1.574 | 0.004301 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctA | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp4 | 438 | L438V | Ctt | Gtt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 438 | L438H | cTt | cAt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 438 | L438del1 | cTt | c-t | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp4 | 438 | L438L | CtT | TtA | 1 | 2 | B.4.5 | 0.011905 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctA | 1 | 2 | B.4.5 | 0.011905 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 2 | 2 | C.17 | 0.111111 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp4 | 438 | L438S | CTt | TCt | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp4 | 438 | L438R | cTt | cGt | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 2 | 2 | P.7 | 0.008734 |
ORF1ab/nsp4 | 438 | L438I | Ctt | Att | 1 | 1 | A | 0.000387 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp4 | 438 | L438G | CTt | GGt | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 438 | L438K | CTT | AAA | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp4 | 438 | L438H | cTt | cAt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp4 | 438 | L438R | cTt | cGt | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp4 | 438 | L438del1 | cTt | c-t | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 438 | L438C | CTT | TGC | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp4 | 438 | L438R | cTt | cGt | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp4 | 438 | L438I | Ctt | Att | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp4 | 438 | L438H | cTt | cAt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 438 | L438I | Ctt | Att | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 438 | L438R | cTt | cGt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 438 | L438H | cTt | cAt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctA | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp4 | 438 | L438H | cTt | cAt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp4 | 438 | L438R | cTt | cGt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 438 | L438H | cTt | cAt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 438 | L438R | cTt | cGt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp4 | 438 | L438V | Ctt | Gtt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp4 | 438 | L438R | cTt | cGt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctA | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp4 | 438 | L438L | CtT | TtA | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctA | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp4 | 438 | L438V | Ctt | Gtt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp4 | 438 | L438I | Ctt | Att | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 438 | L438S | CTt | TCt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 438 | L438R | cTt | cGt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 438 | L438C | CTT | TGC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 438 | L438S | CTt | TCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 438 | L438I | Ctt | Att | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 438 | L438H | cTt | cAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp4 | 438 | L438R | cTt | cGt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.1.34 | 0.013158 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp4 | 438 | L438H | cTt | cAt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp4 | 438 | L438V | Ctt | Gtt | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp4 | 438 | L438R | cTt | cGt | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp4 | 438 | L438C | CTT | TGC | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 438 | L438I | Ctt | Att | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 438 | L438G | CTt | GGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 438 | L438R | cTt | cGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 438 | L438K | CTT | AAA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 438 | L438del1 | Ctt | -tt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 438 | L438I | Ctt | Att | 1 | 1 | B.1.160.19 | 0.035714 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctA | 1 | 1 | B.1.162 | 0.005025 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.276 | 0.016949 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp4 | 438 | L438I | Ctt | Att | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp4 | 438 | L438del1 | Ctt | -tt | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp4 | 438 | L438R | cTt | cGt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp4 | 438 | L438H | cTt | cAt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp4 | 438 | L438V | Ctt | Gtt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.585 | 0.027778 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp4 | 438 | L438V | Ctt | Gtt | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 438 | L438C | CTT | TGC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 438 | L438S | CTt | TCt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 438 | L438I | Ctt | Att | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp4 | 438 | L438S | CTt | TCt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp4 | 438 | L438V | CtT | GtA | 1 | 1 | B.1.81 | 0.021277 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | B.4.5 | 0.011905 |
ORF1ab/nsp4 | 438 | L438R | cTt | cGt | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 438 | L438H | cTT | cAC | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 438 | L438H | cTt | cAt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 438 | L438L | ctT | ctC | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp4 | 438 | L438V | CtT | GtA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp4 | 438 | L438F | Ctt | Ttt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp4 | 438 | L438del | CTT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 438 | L438P | cTt | cCt | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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