CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 43 | I43I | I2806I | syn | atC | atT | 9636 | 9578 | 0.993981 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43I | I2806I | syn | atC | atA | 9636 | 58 | 0.00601909 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43V | I2806V | nonsyn | Atc | Gtc | 439 | 437 | 0.995444 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43V | I2806V | nonsyn | AtC | GtT | 439 | 2 | 0.00455581 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43T | I2806T | nonsyn | aTc | aCc | 323 | 322 | 0.996904 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43T | I2806T | nonsyn | aTC | aCG | 323 | 1 | 0.00309598 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43del | I2806del | del | ATC | --- | 103 | 103 | 1 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43F | I2806F | nonsyn | Atc | Ttc | 26 | 23 | 0.884615 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43F | I2806F | nonsyn | AtC | TtT | 26 | 3 | 0.115385 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43L | I2806L | nonsyn | Atc | Ctc | 23 | 23 | 1 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43N | I2806N | nonsyn | aTc | aAc | 18 | 14 | 0.777778 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43N | I2806N | nonsyn | aTC | aAT | 18 | 4 | 0.222222 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43S | I2806S | nonsyn | aTc | aGc | 11 | 10 | 0.909091 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43S | I2806S | nonsyn | aTC | aGT | 11 | 1 | 0.0909091 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43M | I2806M | nonsyn | atC | atG | 6 | 6 | 1 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43Y | I2806Y | nonsyn | ATc | TAc | 6 | 3 | 0.5 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43Y | I2806Y | nonsyn | ATC | TAT | 6 | 3 | 0.5 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43del2 | I2806del2 | del | ATc | --c | 2 | 2 | 1 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43del1 | I2806del1 | del | Atc | -tc | 2 | 1 | 0.5 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43del1 | I2806del1 | del | atC | at- | 2 | 1 | 0.5 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43E | I2806E | nonsyn | ATC | GAA | 1 | 1 | 1 | 8681-8683 |
ORF1ab/nsp4 | 43 | I43K | I2806K | nonsyn | aTC | aAA | 1 | 1 | 1 | 8681-8683 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 9578 | 9636 | All | 0.001832 |
ORF1ab/nsp4 | 43 | I43I | atC | atA | 58 | 9636 | All | 0.000011 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 4007 | 4007 | B.1.1.37 | 0.772806 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 948 | 952 | B.1.1.7 | 0.000849 |
ORF1ab/nsp4 | 43 | I43I | atC | atA | 4 | 952 | B.1.1.7 | 0.000004 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 768 | 768 | AY.4 | 0.001195 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 437 | 439 | All | 0.000084 |
ORF1ab/nsp4 | 43 | I43V | AtC | GtT | 2 | 439 | All | 0 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 386 | 386 | B.1.595 | 0.100731 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 350 | 350 | AY.43 | 0.001551 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 346 | 347 | B.1.617.2 | 0.001303 |
ORF1ab/nsp4 | 43 | I43I | atC | atA | 1 | 347 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 342 | 342 | B.1.36.29 | 0.176927 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 322 | 323 | All | 0.000062 |
ORF1ab/nsp4 | 43 | I43T | aTC | aCG | 1 | 323 | All | 0 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 156 | 160 | B.1 | 0.001429 |
ORF1ab/nsp4 | 43 | I43I | atC | atA | 4 | 160 | B.1 | 0.000037 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 117 | 117 | AY.4 | 0.000182 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 79 | 113 | AY.25 | 0.000475 |
ORF1ab/nsp4 | 43 | I43I | atC | atA | 34 | 113 | AY.25 | 0.000205 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 111 | 112 | AY.44 | 0.000676 |
ORF1ab/nsp4 | 43 | I43I | atC | atA | 1 | 112 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 103 | 103 | All | 0.00002 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 101 | 101 | B.1.1.222 | 0.020604 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 101 | 101 | B.1.1.7 | 0.00009 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 101 | 101 | B.1.2 | 0.000889 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 94 | 94 | AY.32 | 0.050053 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 89 | 89 | B.1.221 | 0.006322 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 77 | 77 | B.1.429 | 0.001812 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 69 | 69 | AY.100 | 0.003174 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 67 | 67 | B.1.238 | 1 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 65 | 65 | B.1.525 | 0.007355 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 63 | 63 | B.1.243 | 0.004384 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 62 | 63 | P.1 | 0.000977 |
ORF1ab/nsp4 | 43 | I43I | atC | atA | 1 | 63 | P.1 | 0.000016 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 60 | 60 | B.1.1.149 | 0.983607 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 59 | 59 | B.1.1.7 | 0.000053 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 57 | 58 | AY.103 | 0.000354 |
ORF1ab/nsp4 | 43 | I43I | atC | atA | 1 | 58 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 49 | 49 | B.1.596 | 0.00427 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 48 | 48 | AY.47 | 0.001493 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 47 | 47 | AY.4.2 | 0.001019 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 46 | 46 | AY.43 | 0.000204 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 46 | 46 | B.1.369 | 0.01312 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 44 | 44 | B.1.177 | 0.000579 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 40 | 40 | B.1.1.7 | 0.000036 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 37 | 37 | B.1.1 | 0.000671 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 36 | 36 | P.7 | 0.157205 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 27 | 27 | AY.29 | 0.000426 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 27 | 27 | AY.3 | 0.000269 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 27 | 27 | AY.39 | 0.000667 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 27 | 27 | B.1.577 | 0.018557 |
ORF1ab/nsp4 | 43 | I43F | Atc | Ttc | 23 | 26 | All | 0.000004 |
ORF1ab/nsp4 | 43 | I43F | AtC | TtT | 3 | 26 | All | 0.000001 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 24 | 24 | AY.44 | 0.000146 |
ORF1ab/nsp4 | 43 | I43L | Atc | Ctc | 23 | 23 | All | 0.000004 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 23 | 23 | B.1.351 | 0.000684 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 21 | 21 | AY.3 | 0.000209 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 21 | 21 | AY.4 | 0.000033 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 21 | 21 | AY.6 | 0.000864 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 21 | 21 | B.1.427 | 0.00106 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 20 | 20 | AY.41 | 0.005879 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 20 | 20 | B.1.617.2 | 0.000075 |
ORF1ab/nsp4 | 43 | I43N | aTc | aAc | 14 | 18 | All | 0.000003 |
ORF1ab/nsp4 | 43 | I43N | aTC | aAT | 4 | 18 | All | 0.000001 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 16 | 18 | AY.113 | 0.002278 |
ORF1ab/nsp4 | 43 | I43I | atC | atA | 2 | 18 | AY.113 | 0.000285 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 18 | 18 | B.1.526 | 0.000423 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 17 | 17 | AY.120 | 0.000632 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 17 | 17 | AY.61 | 0.001781 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 17 | 17 | B.1.177.60 | 0.003713 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 16 | 16 | AY.25 | 0.000096 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 15 | 15 | AY.25 | 0.00009 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 15 | 15 | B.1.177.17 | 0.012315 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 14 | 14 | AY.118 | 0.000877 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 14 | 14 | B.1.1.46 | 0.061135 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 13 | 13 | P.1.2 | 0.015029 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 12 | 12 | AY.23 | 0.000837 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 12 | 12 | AY.98 | 0.000948 |
ORF1ab/nsp4 | 43 | I43F | Atc | Ttc | 11 | 12 | B.1.1.7 | 0.00001 |
ORF1ab/nsp4 | 43 | I43F | AtC | TtT | 1 | 12 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp4 | 43 | I43S | aTc | aGc | 10 | 11 | All | 0.000002 |
ORF1ab/nsp4 | 43 | I43S | aTC | aGT | 1 | 11 | All | 0 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 11 | 11 | AY.98.1 | 0.000533 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 11 | 11 | B.1.1.50 | 0.007468 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 10 | 10 | AY.20 | 0.000389 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 9 | 10 | AY.33 | 0.000601 |
ORF1ab/nsp4 | 43 | I43I | atC | atA | 1 | 10 | AY.33 | 0.000067 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 10 | 10 | AY.39 | 0.000247 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 9 | 10 | AY.43 | 0.00004 |
ORF1ab/nsp4 | 43 | I43T | aTC | aCG | 1 | 10 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 10 | 10 | AY.45 | 0.001217 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 10 | 10 | AY.9 | 0.000676 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 10 | 10 | B.1.1.214 | 0.000555 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 10 | 10 | B.1.36 | 0.001459 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 10 | 10 | L.3 | 0.035461 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 9 | 9 | AY.26 | 0.000255 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 9 | 9 | AY.46.6 | 0.00065 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 9 | 9 | AY.5 | 0.000186 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 8 | 9 | AY.9.2 | 0.000294 |
ORF1ab/nsp4 | 43 | I43I | atC | atA | 1 | 9 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 9 | 9 | B.1.561 | 0.003573 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 9 | 9 | C.37 | 0.001045 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 8 | 8 | B.1.177.62 | 0.009535 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 8 | 8 | R.1 | 0.00072 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 7 | 7 | A.5 | 0.013462 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 7 | 7 | AY.4.5 | 0.000752 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 7 | 7 | AY.46 | 0.000729 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 7 | 7 | AY.95 | 0.005327 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 7 | 7 | AY.99.2 | 0.000645 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 7 | 7 | B.1.1.519 | 0.000278 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 7 | 7 | B.1.596 | 0.00061 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 7 | 7 | W.3 | 0.036842 |
ORF1ab/nsp4 | 43 | I43M | atC | atG | 6 | 6 | All | 0.000001 |
ORF1ab/nsp4 | 43 | I43Y | ATc | TAc | 3 | 6 | All | 0.000001 |
ORF1ab/nsp4 | 43 | I43Y | ATC | TAT | 3 | 6 | All | 0.000001 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 6 | 6 | AY.116.1 | 0.001869 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 6 | 6 | AY.35 | 0.001398 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 6 | 6 | AY.52 | 0.004886 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 6 | 6 | AY.91 | 0.004383 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 6 | 6 | B.1.1.294 | 0.007595 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 6 | 6 | B.1.128 | 0.003812 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 6 | 6 | B.1.177.7 | 0.000989 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 6 | 6 | B.1.177.86 | 0.001101 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 6 | 6 | B.1.206 | 0.004894 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 5 | 5 | AY.110 | 0.000563 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 5 | 5 | B.1.1.157 | 0.004566 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 5 | 5 | B.1.1.25 | 0.002843 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 5 | 5 | B.1.1.284 | 0.000537 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 5 | 5 | B.1.1.369 | 0.002231 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 5 | 5 | B.1.160.16 | 0.004647 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 5 | 5 | B.1.177.35 | 0.003455 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 5 | 5 | B.1.468 | 0.028571 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 5 | 5 | B.1.609 | 0.002397 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp4 | 43 | I43Y | ATc | TAc | 2 | 4 | 0.111111 | |
ORF1ab/nsp4 | 43 | I43N | aTc | aAc | 2 | 4 | 0.111111 | |
ORF1ab/nsp4 | 43 | I43F | Atc | Ttc | 2 | 4 | 0.111111 | |
ORF1ab/nsp4 | 43 | I43N | aTC | aAT | 2 | 4 | 0.111111 | |
ORF1ab/nsp4 | 43 | I43F | AtC | TtT | 2 | 4 | 0.111111 | |
ORF1ab/nsp4 | 43 | I43Y | ATC | TAT | 2 | 4 | 0.111111 | |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 4 | 4 | AY.111 | 0.000733 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 4 | 4 | AY.16 | 0.001519 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp4 | 43 | I43L | Atc | Ctc | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 4 | 4 | AY.51 | 0.003636 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 4 | 4 | AY.86 | 0.00332 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 4 | 4 | B.1.1.153 | 0.004381 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 4 | 4 | B.1.1.216 | 0.003562 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 4 | 4 | B.1.438.1 | 0.000429 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 3 | 3 | AY.105 | 0.001929 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 3 | 3 | AY.2 | 0.001068 |
ORF1ab/nsp4 | 43 | I43L | Atc | Ctc | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp4 | 43 | I43F | Atc | Ttc | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp4 | 43 | I43N | aTc | aAc | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 3 | 3 | B.1.1.138 | 0.018182 |
ORF1ab/nsp4 | 43 | I43F | Atc | Ttc | 3 | 3 | B.1.1.265 | 0.009464 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp4 | 43 | I43L | Atc | Ctc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp4 | 43 | I43S | aTc | aGc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 3 | 3 | B.1.110.3 | 0.002155 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 3 | 3 | B.1.177.58 | 0.003995 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 3 | 3 | B.1.361 | 0.003866 |
ORF1ab/nsp4 | 43 | I43L | Atc | Ctc | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 3 | 3 | B.1.462 | 0.021739 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 3 | 3 | B.1.470 | 0.004213 |
ORF1ab/nsp4 | 43 | I43L | Atc | Ctc | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 43 | I43V | AtC | GtT | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 2 | A | 0.000387 |
ORF1ab/nsp4 | 43 | I43I | atC | atA | 1 | 2 | A | 0.000387 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp4 | 43 | I43del2 | ATc | --c | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 43 | I43del1 | atC | at- | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 43 | I43del1 | Atc | -tc | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp4 | 43 | I43N | aTc | aAc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | AY.89 | 0.009804 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp4 | 43 | I43N | aTc | aAc | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp4 | 43 | I43N | aTC | aAT | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | B.1.1.230 | 0.018349 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 2 | 2 | B.1.1.315 | 0.016949 |
ORF1ab/nsp4 | 43 | I43I | atC | atA | 2 | 2 | B.1.1.397 | 0.004505 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | B.1.1.47 | 0.010695 |
ORF1ab/nsp4 | 43 | I43M | atC | atG | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 43 | I43N | aTC | aAT | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 43 | I43Y | ATc | TAc | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 43 | I43Y | ATC | TAT | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 43 | I43N | aTc | aAc | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | B.1.160.7 | 0.004158 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | B.1.177.43 | 0.002954 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | B.1.177.6 | 0.001953 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | B.1.195 | 0.01005 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | M.3 | 0.153846 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 2 | 2 | V.1 | 0.045455 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | AL.1 | 0.012987 |
ORF1ab/nsp4 | 43 | I43K | aTC | aAA | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 43 | I43E | ATC | GAA | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp4 | 43 | I43S | aTc | aGc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp4 | 43 | I43N | aTc | aAc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp4 | 43 | I43L | Atc | Ctc | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp4 | 43 | I43S | aTc | aGc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp4 | 43 | I43F | Atc | Ttc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp4 | 43 | I43L | Atc | Ctc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp4 | 43 | I43S | aTc | aGc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 43 | I43F | Atc | Ttc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 43 | I43S | aTc | aGc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 43 | I43M | atC | atG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 43 | I43L | Atc | Ctc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 43 | I43F | Atc | Ttc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 43 | I43S | aTc | aGc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp4 | 43 | I43L | Atc | Ctc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 43 | I43L | Atc | Ctc | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp4 | 43 | I43S | aTC | aGT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp4 | 43 | I43I | atC | atA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.1.144 | 0.028571 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp4 | 43 | I43S | aTc | aGc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.1.378 | 0.007299 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.1.52 | 0.012195 |
ORF1ab/nsp4 | 43 | I43del2 | ATc | --c | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 43 | I43I | atC | atA | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.1.91 | 0.166667 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.1.99 | 0.02381 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.119 | 0.010526 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp4 | 43 | I43M | atC | atG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 43 | I43L | Atc | Ctc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 43 | I43K | aTC | aAA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp4 | 43 | I43N | aTc | aAc | 1 | 1 | B.1.250 | 0.014493 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.306 | 0.005714 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.36.12 | 0.009615 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp4 | 43 | I43del1 | atC | at- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.401 | 0.008197 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.423 | 0.010204 |
ORF1ab/nsp4 | 43 | I43L | Atc | Ctc | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp4 | 43 | I43M | atC | atG | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 43 | I43S | aTc | aGc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 43 | I43N | aTc | aAc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 43 | I43del2 | ATc | --c | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp4 | 43 | I43N | aTc | aAc | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp4 | 43 | I43del1 | Atc | -tc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.1.97 | 0.025641 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp4 | 43 | I43I | atC | atA | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp4 | 43 | I43I | atC | atA | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp4 | 43 | I43I | atC | atA | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 43 | I43E | ATC | GAA | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 43 | I43M | atC | atG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 43 | I43N | aTc | aAc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp4 | 43 | I43V | Atc | Gtc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 43 | I43F | Atc | Ttc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp4 | 43 | I43T | aTc | aCc | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 43 | I43del | ATC | --- | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp4 | 43 | I43I | atC | atT | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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