CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 408

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4408S408SS3171SsyntcCtcT228721960.960219776-9778
ORF1ab/nsp4408S408SS3171SsyntcCtcA2287880.03847849776-9778
ORF1ab/nsp4408S408SS3171SsyntcCtcG228730.001311769776-9778
ORF1ab/nsp4408S408delS3171deldelTCC---929219776-9778
ORF1ab/nsp4408S408YS3171YnonsyntCctAc585819776-9778
ORF1ab/nsp4408S408FS3171FnonsyntCctTc42380.9047629776-9778
ORF1ab/nsp4408S408FS3171FnonsyntCCtTT4240.09523819776-9778
ORF1ab/nsp4408S408AS3171AnonsynTccGcc212119776-9778
ORF1ab/nsp4408S408LS3171LnonsyntCCtTA750.7142869776-9778
ORF1ab/nsp4408S408LS3171LnonsynTCcCTc720.2857149776-9778
ORF1ab/nsp4408S408PS3171PnonsynTcCCcA640.6666679776-9778
ORF1ab/nsp4408S408PS3171PnonsynTccCcc620.3333339776-9778
ORF1ab/nsp4408S408CS3171CnonsyntCctGc5519776-9778
ORF1ab/nsp4408S408TS3171TnonsynTccAcc4419776-9778
ORF1ab/nsp4408S408del1S3171del1deltCct-c320.6666679776-9778
ORF1ab/nsp4408S408del1S3171del1delTcc-cc310.3333339776-9778
ORF1ab/nsp4408S408XS3171XnonsyntCCtAA1119776-9778

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4408S408StcCtcT21962287All0.00042
ORF1ab/nsp4408S408StcCtcA882287All0.000017
ORF1ab/nsp4408S408StcCtcG32287All0.000001
ORF1ab/nsp4408S408StcCtcT389389AY.30.003869
ORF1ab/nsp4408S408StcCtcT187204B.1.1.70.000167
ORF1ab/nsp4408S408StcCtcA16204B.1.1.70.000014
ORF1ab/nsp4408S408StcCtcG1204B.1.1.70.000001
ORF1ab/nsp4408S408StcCtcT193193AY.260.005464
ORF1ab/nsp4408S408StcCtcT176176AT.10.902564
ORF1ab/nsp4408S408StcCtcT162167B.10.001484
ORF1ab/nsp4408S408StcCtcA5167B.10.000046
ORF1ab/nsp4408S408StcCtcT138138B.1.9.40.846626
ORF1ab/nsp4408S408StcCtcT111113AY.250.000668
ORF1ab/nsp4408S408StcCtcA2113AY.250.000012
ORF1ab/nsp4408S408StcCtcT9197AY.40.000142
ORF1ab/nsp4408S408StcCtcA697AY.40.000009
ORF1ab/nsp4408S408delTCC---9292All0.000018
ORF1ab/nsp4408S408StcCtcT6272B.1.617.20.000233
ORF1ab/nsp4408S408StcCtcA1072B.1.617.20.000038
ORF1ab/nsp4408S408YtCctAc5858All0.000011
ORF1ab/nsp4408S408FtCctTc3842All0.000007
ORF1ab/nsp4408S408FtCCtTT442All0.000001
ORF1ab/nsp4408S408delTCC---4040B.1.1.70.000036
ORF1ab/nsp4408S408StcCtcT3939AY.750.002185
ORF1ab/nsp4408S408StcCtcT3738AY.430.000164
ORF1ab/nsp4408S408StcCtcA138AY.430.000004
ORF1ab/nsp4408S408StcCtcT3638B.1.20.000317
ORF1ab/nsp4408S408StcCtcA238B.1.20.000018
ORF1ab/nsp4408S408StcCtcT3434AY.1030.000211
ORF1ab/nsp4408S408StcCtcT2630B.1.10.000472
ORF1ab/nsp4408S408StcCtcA430B.1.10.000073
ORF1ab/nsp4408S408StcCtcT2525AY.440.000152
ORF1ab/nsp4408S408StcCtcT2525B.1.5260.000588
ORF1ab/nsp4408S408StcCtcT2525P.10.000394
ORF1ab/nsp4408S408StcCtcT2424B.1.3510.000713
ORF1ab/nsp4408S408ATccGcc2121All0.000004
ORF1ab/nsp4408S408StcCtcT1921AY.1020.000504
ORF1ab/nsp4408S408StcCtcA221AY.1020.000053
ORF1ab/nsp4408S408StcCtcT1818B.1.1.5190.000715
ORF1ab/nsp4408S408YtCctAc1818B.1.1.70.000016
ORF1ab/nsp4408S408StcCtcT1717B.1.3990.032882
ORF1ab/nsp4408S408StcCtcT1616B.1.4270.000808
ORF1ab/nsp4408S408StcCtcT1616B.1.910.033195
ORF1ab/nsp4408S408StcCtcT1414AY.90.000946
ORF1ab/nsp4408S408StcCtcT1212AY.9.10.001005
ORF1ab/nsp4408S408StcCtcA711AY.1190.000247
ORF1ab/nsp4408S408StcCtcT411AY.1190.000141
ORF1ab/nsp4408S408StcCtcT1111B.1.4290.000259
ORF1ab/nsp4408S408StcCtcT1111B.1.6370.000804
ORF1ab/nsp4408S408StcCtcA510AY.290.000079
ORF1ab/nsp4408S408StcCtcT410AY.290.000063
ORF1ab/nsp4408S408StcCtcG110AY.290.000016
ORF1ab/nsp4408S408StcCtcT1010AY.39.10.000396
ORF1ab/nsp4408S408StcCtcT1010B.1.3490.007148
ORF1ab/nsp4408S408StcCtcA88B.1.1.1700.009975
ORF1ab/nsp4408S408FtCctTc68B.1.1.70.000005
ORF1ab/nsp4408S408FtCCtTT28B.1.1.70.000002
ORF1ab/nsp4408S408delTCC---88B.1.1770.000105
ORF1ab/nsp4408S408LtCCtTA57All0.000001
ORF1ab/nsp4408S408LTCcCTc27All0
ORF1ab/nsp4408S408YtCctAc77AY.40.000011
ORF1ab/nsp4408S408StcCtcT77AY.470.000218
ORF1ab/nsp4408S408StcCtcT77B.1.1.280.002179
ORF1ab/nsp4408S408StcCtcT77B.1.1770.000092
ORF1ab/nsp4408S408StcCtcT77B.1.36.180.002941
ORF1ab/nsp4408S408StcCtcA77B.1.438.10.000751
ORF1ab/nsp4408S408StcCtcT77B.1.90.04321
ORF1ab/nsp4408S408PTcCCcA46All0.000001
ORF1ab/nsp4408S408PTccCcc26All0
ORF1ab/nsp4408S408StcCtcT66AY.390.000148
ORF1ab/nsp4408S408StcCtcT66AY.5.40.00166
ORF1ab/nsp4408S408ATccGcc66B.1.1.70.000005
ORF1ab/nsp4408S408ATccGcc66B.1.20.000053
ORF1ab/nsp4408S408StcCtcT66B.1.2430.000418
ORF1ab/nsp4408S408StcCtcT56B.1.5250.000566
ORF1ab/nsp4408S408StcCtcG16B.1.5250.000113
ORF1ab/nsp4408S408YtCctAc66B.1.617.20.000023
ORF1ab/nsp4408S408StcCtcT66P.1.140.000287
ORF1ab/nsp4408S408CtCctGc55All0.000001
ORF1ab/nsp4408S408delTCC---55AY.40.000008
ORF1ab/nsp4408S408delTCC---55AY.4.50.000537
ORF1ab/nsp4408S408StcCtcT55AY.50.000103
ORF1ab/nsp4408S408StcCtcT55AY.610.000524
ORF1ab/nsp4408S408YtCctAc55B.10.000046
ORF1ab/nsp4408S408StcCtcT55B.1.416.10.007812
ORF1ab/nsp4408S408FtCctTc35B.1.5250.000339
ORF1ab/nsp4408S408FtCCtTT25B.1.5250.000226
ORF1ab/nsp4408S408StcCtcT55B.1.6090.002397
ORF1ab/nsp4408S408PTcCCcA440.222222
ORF1ab/nsp4408S408TTccAcc44All0.000001
ORF1ab/nsp4408S408StcCtcA44AY.1010.001962
ORF1ab/nsp4408S408FtCctTc44AY.1030.000025
ORF1ab/nsp4408S408StcCtcT44AY.1170.000338
ORF1ab/nsp4408S408StcCtcT34AY.4.20.000065
ORF1ab/nsp4408S408StcCtcA14AY.4.20.000022
ORF1ab/nsp4408S408delTCC---44AY.430.000018
ORF1ab/nsp4408S408FtCctTc44AY.440.000024
ORF1ab/nsp4408S408StcCtcT34AY.460.000312
ORF1ab/nsp4408S408StcCtcA14AY.460.000104
ORF1ab/nsp4408S408StcCtcT44AY.540.000381
ORF1ab/nsp4408S408StcCtcT44AY.9.20.000147
ORF1ab/nsp4408S408LtCCtTA44B.1.1.70.000004
ORF1ab/nsp4408S408StcCtcT44B.1.3610.005155
ORF1ab/nsp4408S408StcCtcT44B.1.4250.011976
ORF1ab/nsp4408S408StcCtcT44B.1.617.10.000516
ORF1ab/nsp4408S408StcCtcT44B.1.9.50.022727
ORF1ab/nsp4408S408StcCtcT44P.1.50.307692
ORF1ab/nsp4408S408StcCtcT44P.1.70.001277
ORF1ab/nsp4408S408StcCtcT33A.23.10.002113
ORF1ab/nsp4408S408del1tCct-c23All0
ORF1ab/nsp4408S408del1Tcc-cc13All0
ORF1ab/nsp4408S408StcCtcT33AY.1180.000188
ORF1ab/nsp4408S408ATccGcc33AY.250.000018
ORF1ab/nsp4408S408StcCtcT33AY.330.0002
ORF1ab/nsp4408S408StcCtcT33AY.420.000121
ORF1ab/nsp4408S408StcCtcT33AY.830.005172
ORF1ab/nsp4408S408StcCtcA23B0.000256
ORF1ab/nsp4408S408StcCtcT13B0.000128
ORF1ab/nsp4408S408StcCtcT23B.1.1600.000062
ORF1ab/nsp4408S408StcCtcA13B.1.1600.000031
ORF1ab/nsp4408S408YtCctAc33B.1.1770.00004
ORF1ab/nsp4408S408StcCtcT33B.1.2340.000396
ORF1ab/nsp4408S408StcCtcT33B.1.2580.0002
ORF1ab/nsp4408S408StcCtcT33B.1.36.10.003421
ORF1ab/nsp4408S408StcCtcT33B.1.595.20.12
ORF1ab/nsp4408S408StcCtcT33D.20.000225
ORF1ab/nsp4408S408StcCtcT33P.1.40.00293
ORF1ab/nsp4408S408CtCctGc220.111111
ORF1ab/nsp4408S408delTCC---220.111111
ORF1ab/nsp4408S408StcCtcT22A.20.001324
ORF1ab/nsp4408S408StcCtcT22A.290.010638
ORF1ab/nsp4408S408StcCtcT22AE.80.000978
ORF1ab/nsp4408S408StcCtcT22AY.1000.000092
ORF1ab/nsp4408S408YtCctAc22AY.1020.000053
ORF1ab/nsp4408S408FtCctTc22AY.200.000078
ORF1ab/nsp4408S408StcCtcT22AY.200.000078
ORF1ab/nsp4408S408YtCctAc22AY.290.000032
ORF1ab/nsp4408S408StcCtcT22AY.4.30.001684
ORF1ab/nsp4408S408StcCtcT22AY.720.002721
ORF1ab/nsp4408S408StcCtcT22AY.930.000546
ORF1ab/nsp4408S408StcCtcT22AY.980.000158
ORF1ab/nsp4408S408StcCtcT22AY.99.20.000184
ORF1ab/nsp4408S408FtCctTc22B.1.10.000036
ORF1ab/nsp4408S408StcCtcT22B.1.1.3970.004505
ORF1ab/nsp4408S408StcCtcT22B.1.177.150.001262
ORF1ab/nsp4408S408StcCtcA12B.1.177.730.000566
ORF1ab/nsp4408S408StcCtcT12B.1.177.730.000566
ORF1ab/nsp4408S408StcCtcT22B.1.177.870.001456
ORF1ab/nsp4408S408delTCC---22B.1.20.000018
ORF1ab/nsp4408S408FtCctTc22B.1.20.000018
ORF1ab/nsp4408S408StcCtcT22B.1.3110.000549
ORF1ab/nsp4408S408StcCtcT22B.1.3240.00321
ORF1ab/nsp4408S408StcCtcT22B.1.36.290.001035
ORF1ab/nsp4408S408StcCtcT22B.1.36.350.005208
ORF1ab/nsp4408S408StcCtcT22B.1.429.10.024096
ORF1ab/nsp4408S408delTCC---22B.1.617.10.000258
ORF1ab/nsp4408S408delTCC---22B.1.617.20.000008
ORF1ab/nsp4408S408StcCtcT22C.10.004785
ORF1ab/nsp4408S408StcCtcT22C.370.000232
ORF1ab/nsp4408S408YtCctAc110.055556
ORF1ab/nsp4408S408FtCctTc110.055556
ORF1ab/nsp4408S408StcCtcT11A.2.50.000499
ORF1ab/nsp4408S408delTCC---11AD.20.000219
ORF1ab/nsp4408S408StcCtcT11AH.30.003802
ORF1ab/nsp4408S408XtCCtAA11All0
ORF1ab/nsp4408S408ATccGcc11AY.1020.000027
ORF1ab/nsp4408S408StcCtcT11AY.1060.000335
ORF1ab/nsp4408S408YtCctAc11AY.1080.001103
ORF1ab/nsp4408S408delTCC---11AY.1080.001103
ORF1ab/nsp4408S408StcCtcT11AY.116.10.000311
ORF1ab/nsp4408S408StcCtcT11AY.1200.000037
ORF1ab/nsp4408S408YtCctAc11AY.16.10.00047
ORF1ab/nsp4408S408StcCtcT11AY.220.002092
ORF1ab/nsp4408S408StcCtcT11AY.230.00007
ORF1ab/nsp4408S408YtCctAc11AY.230.00007
ORF1ab/nsp4408S408delTCC---11AY.250.000006
ORF1ab/nsp4408S408FtCctTc11AY.30.00001
ORF1ab/nsp4408S408StcCtcA11AY.3.10.000085
ORF1ab/nsp4408S408StcCtcT11AY.340.000097
ORF1ab/nsp4408S408FtCctTc11AY.40.000002
ORF1ab/nsp4408S408delTCC---11AY.4.30.000842
ORF1ab/nsp4408S408FtCctTc11AY.430.000004
ORF1ab/nsp4408S408YtCctAc11AY.430.000004
ORF1ab/nsp4408S408CtCctGc11AY.430.000004
ORF1ab/nsp4408S408ATccGcc11AY.440.000006
ORF1ab/nsp4408S408StcCtcT11AY.450.000122
ORF1ab/nsp4408S408CtCctGc11AY.460.000104
ORF1ab/nsp4408S408StcCtcT11AY.46.30.000934
ORF1ab/nsp4408S408StcCtcT11AY.46.60.000072
ORF1ab/nsp4408S408YtCctAc11AY.530.000288
ORF1ab/nsp4408S408FtCctTc11AY.60.000041
ORF1ab/nsp4408S408delTCC---11AY.60.000041
ORF1ab/nsp4408S408StcCtcT11AY.650.000533
ORF1ab/nsp4408S408StcCtcT11AY.680.000274
ORF1ab/nsp4408S408StcCtcT11AY.700.000209
ORF1ab/nsp4408S408StcCtcT11AY.710.000475
ORF1ab/nsp4408S408CtCctGc11AY.750.000056
ORF1ab/nsp4408S408TTccAcc11AY.780.001541
ORF1ab/nsp4408S408StcCtcT11AY.820.001357
ORF1ab/nsp4408S408LTCcCTc11AY.840.000437
ORF1ab/nsp4408S408delTCC---11AY.90.000068
ORF1ab/nsp4408S408delTCC---11AY.9.20.000037
ORF1ab/nsp4408S408StcCtcT11AY.910.00073
ORF1ab/nsp4408S408TTccAcc11AY.910.00073
ORF1ab/nsp4408S408StcCtcT11AY.920.000287
ORF1ab/nsp4408S408StcCtcT11AY.98.10.000048
ORF1ab/nsp4408S408delTCC---11AY.990.001049
ORF1ab/nsp4408S408delTCC---11AY.99.10.001553
ORF1ab/nsp4408S408StcCtcT11AZ.20.000821
ORF1ab/nsp4408S408FtCctTc11B0.000128
ORF1ab/nsp4408S408XtCCtAA11B.10.000009
ORF1ab/nsp4408S408FtCctTc11B.10.000009
ORF1ab/nsp4408S408PTccCcc11B.10.000009
ORF1ab/nsp4408S408delTCC---11B.1.10.000018
ORF1ab/nsp4408S408ATccGcc11B.1.10.000018
ORF1ab/nsp4408S408delTCC---11B.1.1.1390.022727
ORF1ab/nsp4408S408StcCtcA11B.1.1.1410.002012
ORF1ab/nsp4408S408StcCtcT11B.1.1.1960.005714
ORF1ab/nsp4408S408YtCctAc11B.1.1.250.000569
ORF1ab/nsp4408S408ATccGcc11B.1.1.2840.000107
ORF1ab/nsp4408S408StcCtcT11B.1.1.2940.001266
ORF1ab/nsp4408S408StcCtcT11B.1.1.3060.000438
ORF1ab/nsp4408S408FtCctTc11B.1.1.3170.000412
ORF1ab/nsp4408S408YtCctAc11B.1.1.3180.000302
ORF1ab/nsp4408S408StcCtcT11B.1.1.3700.012658
ORF1ab/nsp4408S408FtCctTc11B.1.1.4090.002833
ORF1ab/nsp4408S408StcCtcT11B.1.1.610.008772
ORF1ab/nsp4408S408StcCtcT11B.1.1280.000635
ORF1ab/nsp4408S408StcCtcT11B.1.1570.002985
ORF1ab/nsp4408S408FtCctTc11B.1.1600.000031
ORF1ab/nsp4408S408delTCC---11B.1.177.110.001698
ORF1ab/nsp4408S408delTCC---11B.1.177.160.000664
ORF1ab/nsp4408S408delTCC---11B.1.177.170.000821
ORF1ab/nsp4408S408delTCC---11B.1.177.40.000211
ORF1ab/nsp4408S408del1Tcc-cc11B.1.177.540.000606
ORF1ab/nsp4408S408StcCtcT11B.1.177.540.000606
ORF1ab/nsp4408S408delTCC---11B.1.177.580.001332
ORF1ab/nsp4408S408delTCC---11B.1.177.690.001484
ORF1ab/nsp4408S408delTCC---11B.1.177.760.002494
ORF1ab/nsp4408S408delTCC---11B.1.177.810.000189
ORF1ab/nsp4408S408StcCtcT11B.1.177.860.000183
ORF1ab/nsp4408S408StcCtcT11B.1.1870.033333
ORF1ab/nsp4408S408del1tCct-c11B.1.20.000009
ORF1ab/nsp4408S408StcCtcT11B.1.2210.000071
ORF1ab/nsp4408S408StcCtcT11B.1.2410.000812
ORF1ab/nsp4408S408delTCC---11B.1.258.110.000396
ORF1ab/nsp4408S408YtCctAc11B.1.258.140.00098
ORF1ab/nsp4408S408delTCC---11B.1.258.30.001675
ORF1ab/nsp4408S408StcCtcT11B.1.3230.020833
ORF1ab/nsp4408S408YtCctAc11B.1.351.30.000876
ORF1ab/nsp4408S408StcCtcA11B.1.360.000146
ORF1ab/nsp4408S408StcCtcT11B.1.36.170.000494
ORF1ab/nsp4408S408PTccCcc11B.1.36.270.000763
ORF1ab/nsp4408S408StcCtcT11B.1.36.340.021277
ORF1ab/nsp4408S408StcCtcT11B.1.3670.000792
ORF1ab/nsp4408S408StcCtcT11B.1.3690.000285
ORF1ab/nsp4408S408StcCtcT11B.1.4000.000429
ORF1ab/nsp4408S408StcCtcT11B.1.4360.001029
ORF1ab/nsp4408S408StcCtcT11B.1.4500.011364
ORF1ab/nsp4408S408StcCtcT11B.1.4970.000315
ORF1ab/nsp4408S408YtCctAc11B.1.5260.000024
ORF1ab/nsp4408S408TTccAcc11B.1.5680.001111
ORF1ab/nsp4408S408FtCctTc11B.1.5800.004065
ORF1ab/nsp4408S408FtCctTc11B.1.5950.000261
ORF1ab/nsp4408S408StcCtcT11B.1.5950.000261
ORF1ab/nsp4408S408StcCtcT11B.1.5960.000087
ORF1ab/nsp4408S408TTccAcc11B.1.617.10.000129
ORF1ab/nsp4408S408del1tCct-c11B.1.617.20.000004
ORF1ab/nsp4408S408ATccGcc11B.1.617.20.000004
ORF1ab/nsp4408S408YtCctAc11B.1.6230.000536
ORF1ab/nsp4408S408StcCtcT11B.1.6230.000536
ORF1ab/nsp4408S408LtCCtTA11B.1.6360.006711
ORF1ab/nsp4408S408ATccGcc11B.1.6370.000073
ORF1ab/nsp4408S408StcCtcT11B.230.002924
ORF1ab/nsp4408S408StcCtcT11B.40.002208
ORF1ab/nsp4408S408FtCctTc11B.400.000364
ORF1ab/nsp4408S408YtCctAc11B.6.60.000889
ORF1ab/nsp4408S408LTCcCTc11C.350.000774
ORF1ab/nsp4408S408FtCctTc11D.20.000075
ORF1ab/nsp4408S408YtCctAc11D.20.000075
ORF1ab/nsp4408S408YtCctAc11P.1.150.000232
ORF1ab/nsp4408S408StcCtcT11P.1.150.000232
ORF1ab/nsp4408S408FtCctTc11P.1.170.000162
ORF1ab/nsp4408S408StcCtcT11P.1.60.001946
ORF1ab/nsp4408S408StcCtcT11P.20.000187
ORF1ab/nsp4408S408delTCC---11Q.10.000126
ORF1ab/nsp4408S408StcCtcT11Q.80.000165
ORF1ab/nsp4408S408StcCtcT11R.10.00009