CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 401

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4401R401HR3164HnonsyncGtcAt2197219719755-9757
ORF1ab/nsp4401R401RR3164RsyncgTcgC2812730.971539755-9757
ORF1ab/nsp4401R401RR3164RsyncgTcgG28150.01779369755-9757
ORF1ab/nsp4401R401RR3164RsyncgTcgA28130.01067629755-9757
ORF1ab/nsp4401R401delR3164deldelCGT---10010019755-9757
ORF1ab/nsp4401R401LR3164LnonsyncGtcTt80790.98759755-9757
ORF1ab/nsp4401R401LR3164LnonsyncGTcTC8010.01259755-9757
ORF1ab/nsp4401R401CR3164CnonsynCgtTgt141419755-9757
ORF1ab/nsp4401R401SR3164SnonsynCgtAgt111119755-9757
ORF1ab/nsp4401R401del2R3164del2delcGTc--870.8759755-9757
ORF1ab/nsp4401R401del2R3164del2delCGt--t810.1259755-9757
ORF1ab/nsp4401R401del1R3164del1delcGtc-t620.3333339755-9757
ORF1ab/nsp4401R401del1R3164del1delCgTGg-620.3333339755-9757
ORF1ab/nsp4401R401del1R3164del1delCgt-gt620.3333339755-9757
ORF1ab/nsp4401R401PR3164PnonsyncGtcCt320.6666679755-9757
ORF1ab/nsp4401R401PR3164PnonsyncGTcCA310.3333339755-9757
ORF1ab/nsp4401R401QR3164QnonsyncGTcAG2219755-9757
ORF1ab/nsp4401R401GR3164GnonsynCgtGgt2219755-9757
ORF1ab/nsp4401R401IR3164InonsynCGtATt1119755-9757

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4401R401HcGtcAt21972197All0.00042
ORF1ab/nsp4401R401HcGtcAt847847B.1.1.70.000758
ORF1ab/nsp4401R401HcGtcAt469469B.1.6270.947475
ORF1ab/nsp4401R401HcGtcAt291291B.1.6310.979798
ORF1ab/nsp4401R401RcgTcgC273281All0.000052
ORF1ab/nsp4401R401RcgTcgG5281All0.000001
ORF1ab/nsp4401R401RcgTcgA3281All0.000001
ORF1ab/nsp4401R401HcGtcAt140140B.1.1.5280.673077
ORF1ab/nsp4401R401RcgTcgC113113B.1.1390.082845
ORF1ab/nsp4401R401delCGT---100100All0.000019
ORF1ab/nsp4401R401HcGtcAt9191AY.40.000142
ORF1ab/nsp4401R401LcGtcTt7980All0.000015
ORF1ab/nsp4401R401LcGTcTC180All0
ORF1ab/nsp4401R401HcGtcAt5151AY.1180.003195
ORF1ab/nsp4401R401delCGT---4242B.1.1.70.000038
ORF1ab/nsp4401R401HcGtcAt3939B.10.000357
ORF1ab/nsp4401R401HcGtcAt3333B.1.1600.001029
ORF1ab/nsp4401R401HcGtcAt2525AY.370.007901
ORF1ab/nsp4401R401LcGtcTt2424A.2.40.080808
ORF1ab/nsp4401R401HcGtcAt2121AY.30.000209
ORF1ab/nsp4401R401RcgTcgC2121B.1.1.70.000019
ORF1ab/nsp4401R401RcgTcgC2121B.1.3510.000624
ORF1ab/nsp4401R401HcGtcAt2121B.1.5760.019039
ORF1ab/nsp4401R401RcgTcgC1919AY.1030.000118
ORF1ab/nsp4401R401RcgTcgC1515B.1.617.20.000056
ORF1ab/nsp4401R401CCgtTgt1414All0.000003
ORF1ab/nsp4401R401HcGtcAt1414AY.430.000062
ORF1ab/nsp4401R401HcGtcAt1414B.1.10.000254
ORF1ab/nsp4401R401RcgTcgC1112B.10.000101
ORF1ab/nsp4401R401RcgTcgG112B.10.000009
ORF1ab/nsp4401R401RcgTcgC1212B.1.177.850.065217
ORF1ab/nsp4401R401SCgtAgt1111All0.000002
ORF1ab/nsp4401R401HcGtcAt1111AY.1030.000068
ORF1ab/nsp4401R401RcgTcgC1111B.1.1.5190.000437
ORF1ab/nsp4401R401HcGtcAt1111B.1.617.20.000041
ORF1ab/nsp4401R401LcGtcTt1010B.1.1.70.000009
ORF1ab/nsp4401R401delCGT---1010B.1.1770.000132
ORF1ab/nsp4401R401HcGtcAt1010B.1.20.000088
ORF1ab/nsp4401R401HcGtcAt99AY.250.000054
ORF1ab/nsp4401R401HcGtcAt99AY.440.000055
ORF1ab/nsp4401R401del2cGTc--78All0.000001
ORF1ab/nsp4401R401del2CGt--t18All0
ORF1ab/nsp4401R401HcGtcAt77AF.10.259259
ORF1ab/nsp4401R401delCGT---77AY.40.000011
ORF1ab/nsp4401R401HcGtcAt77AY.470.000218
ORF1ab/nsp4401R401LcGtcTt66A.2.50.002994
ORF1ab/nsp4401R401del1CgTGg-26All0
ORF1ab/nsp4401R401del1Cgt-gt26All0
ORF1ab/nsp4401R401del1cGtc-t26All0
ORF1ab/nsp4401R401LcGtcTt66AY.250.000036
ORF1ab/nsp4401R401delCGT---66AY.4.50.000645
ORF1ab/nsp4401R401HcGtcAt66B.1.1.340.078947
ORF1ab/nsp4401R401HcGtcAt66B.1.3510.000178
ORF1ab/nsp4401R401RcgTcgC55AY.40.000008
ORF1ab/nsp4401R401LcGtcTt55AY.440.00003
ORF1ab/nsp4401R401RcgTcgC25D.20.00015
ORF1ab/nsp4401R401RcgTcgG25D.20.00015
ORF1ab/nsp4401R401RcgTcgA15D.20.000075
ORF1ab/nsp4401R401LcGtcTt44AY.1030.000025
ORF1ab/nsp4401R401HcGtcAt44AY.1190.000141
ORF1ab/nsp4401R401delCGT---44AY.430.000018
ORF1ab/nsp4401R401HcGtcAt44B.1.1.5190.000159
ORF1ab/nsp4401R401RcgTcgC44B.1.20.000035
ORF1ab/nsp4401R401PcGtcCt23All0
ORF1ab/nsp4401R401PcGTcCA13All0
ORF1ab/nsp4401R401LcGtcTt33AY.1020.00008
ORF1ab/nsp4401R401HcGtcAt33AY.230.000209
ORF1ab/nsp4401R401RcgTcgC33AY.290.000047
ORF1ab/nsp4401R401LcGtcTt33AY.40.000005
ORF1ab/nsp4401R401RcgTcgC33AY.430.000013
ORF1ab/nsp4401R401RcgTcgC33AY.540.000286
ORF1ab/nsp4401R401HcGtcAt33B.1.1.5230.004687
ORF1ab/nsp4401R401RcgTcgC33B.1.1770.00004
ORF1ab/nsp4401R401RcgTcgC33C.370.000348
ORF1ab/nsp4401R401GCgtGgt220.111111
ORF1ab/nsp4401R401QcGTcAG220.111111
ORF1ab/nsp4401R401SCgtAgt220.111111
ORF1ab/nsp4401R401del1CgTGg-220.111111
ORF1ab/nsp4401R401HcGtcAt22AD.20.000438
ORF1ab/nsp4401R401GCgtGgt22All0
ORF1ab/nsp4401R401QcGTcAG22All0
ORF1ab/nsp4401R401RcgTcgC22AY.1020.000053
ORF1ab/nsp4401R401HcGtcAt22AY.290.000032
ORF1ab/nsp4401R401LcGtcTt22AY.290.000032
ORF1ab/nsp4401R401HcGtcAt22AY.340.000194
ORF1ab/nsp4401R401HcGtcAt22AY.7.20.001119
ORF1ab/nsp4401R401HcGtcAt22B0.000256
ORF1ab/nsp4401R401SCgtAgt22B.10.000018
ORF1ab/nsp4401R401CCgtTgt22B.1.10.000036
ORF1ab/nsp4401R401delCGT---22B.1.10.000036
ORF1ab/nsp4401R401RcgTcgC22B.1.10.000036
ORF1ab/nsp4401R401HcGtcAt22B.1.1.2070.002364
ORF1ab/nsp4401R401HcGtcAt22B.1.1.2410.004141
ORF1ab/nsp4401R401HcGtcAt22B.1.1.250.001137
ORF1ab/nsp4401R401SCgtAgt22B.1.1.70.000002
ORF1ab/nsp4401R401CCgtTgt22B.1.1.70.000002
ORF1ab/nsp4401R401delCGT---22B.1.177.580.002663
ORF1ab/nsp4401R401delCGT---22B.1.20.000018
ORF1ab/nsp4401R401RcgTcgC22B.1.360.000292
ORF1ab/nsp4401R401HcGtcAt22B.1.4000.000858
ORF1ab/nsp4401R401PcGTcCA12B.1.4160.001269
ORF1ab/nsp4401R401PcGtcCt12B.1.4160.001269
ORF1ab/nsp4401R401RcgTcgC22B.1.5960.000174
ORF1ab/nsp4401R401SCgtAgt22B.1.617.20.000008
ORF1ab/nsp4401R401LcGtcTt22B.1.617.20.000008
ORF1ab/nsp4401R401del2cGTc--22B.1.617.20.000008
ORF1ab/nsp4401R401HcGtcAt22P.10.000032
ORF1ab/nsp4401R401LcGtcTt11A0.000387
ORF1ab/nsp4401R401LcGtcTt11A.20.000662
ORF1ab/nsp4401R401HcGtcAt11A.20.000662
ORF1ab/nsp4401R401delCGT---11AD.20.000219
ORF1ab/nsp4401R401ICGtATt11All0
ORF1ab/nsp4401R401CCgtTgt11AT.10.005128
ORF1ab/nsp4401R401HcGtcAt11AY.1020.000027
ORF1ab/nsp4401R401HcGtcAt11AY.1140.000231
ORF1ab/nsp4401R401RcgTcgC11AY.1170.000085
ORF1ab/nsp4401R401RcgTcgC11AY.1190.000035
ORF1ab/nsp4401R401HcGtcAt11AY.120.000316
ORF1ab/nsp4401R401RcgTcgC11AY.1200.000037
ORF1ab/nsp4401R401LcGtcTt11AY.120.20.001285
ORF1ab/nsp4401R401LcGtcTt11AY.140.000088
ORF1ab/nsp4401R401delCGT---11AY.190.00114
ORF1ab/nsp4401R401RcgTcgC11AY.200.000039
ORF1ab/nsp4401R401HcGtcAt11AY.200.000039
ORF1ab/nsp4401R401delCGT---11AY.250.000006
ORF1ab/nsp4401R401RcgTcgC11AY.250.000006
ORF1ab/nsp4401R401LcGtcTt11AY.30.00001
ORF1ab/nsp4401R401HcGtcAt11AY.4.20.000022
ORF1ab/nsp4401R401delCGT---11AY.4.30.000842
ORF1ab/nsp4401R401LcGtcTt11AY.420.00004
ORF1ab/nsp4401R401HcGtcAt11AY.420.00004
ORF1ab/nsp4401R401LcGtcTt11AY.430.000004
ORF1ab/nsp4401R401del1cGtc-t11AY.440.000006
ORF1ab/nsp4401R401ICGtATt11AY.440.000006
ORF1ab/nsp4401R401CCgtTgt11AY.440.000006
ORF1ab/nsp4401R401del2cGTc--11AY.440.000006
ORF1ab/nsp4401R401RcgTcgC11AY.460.000104
ORF1ab/nsp4401R401delCGT---11AY.46.20.000635
ORF1ab/nsp4401R401HcGtcAt11AY.50.000021
ORF1ab/nsp4401R401delCGT---11AY.60.000041
ORF1ab/nsp4401R401HcGtcAt11AY.60.000041
ORF1ab/nsp4401R401HcGtcAt11AY.610.000105
ORF1ab/nsp4401R401HcGtcAt11AY.640.000595
ORF1ab/nsp4401R401delCGT---11AY.680.000274
ORF1ab/nsp4401R401LcGTcTC11AY.840.000437
ORF1ab/nsp4401R401delCGT---11AY.90.000068
ORF1ab/nsp4401R401del1Cgt-gt11AY.9.20.000037
ORF1ab/nsp4401R401HcGtcAt11AY.98.10.000048
ORF1ab/nsp4401R401del2cGTc--11AY.990.001049
ORF1ab/nsp4401R401delCGT---11AY.99.10.001553
ORF1ab/nsp4401R401del2cGTc--11B.10.000009
ORF1ab/nsp4401R401CCgtTgt11B.10.000009
ORF1ab/nsp4401R401del1cGtc-t11B.10.000009
ORF1ab/nsp4401R401LcGtcTt11B.1.10.000018
ORF1ab/nsp4401R401SCgtAgt11B.1.10.000018
ORF1ab/nsp4401R401SCgtAgt11B.1.1.1390.022727
ORF1ab/nsp4401R401LcGtcTt11B.1.1.2690.001353
ORF1ab/nsp4401R401HcGtcAt11B.1.1.280.000311
ORF1ab/nsp4401R401RcgTcgC11B.1.1.2860.002899
ORF1ab/nsp4401R401del2CGt--t11B.1.1.370.000193
ORF1ab/nsp4401R401RcgTcgC11B.1.1.3820.035714
ORF1ab/nsp4401R401HcGtcAt11B.1.1.4480.002033
ORF1ab/nsp4401R401RcgTcgC11B.1.1.500.000679
ORF1ab/nsp4401R401del2cGTc--11B.1.1.70.000001
ORF1ab/nsp4401R401delCGT---11B.1.1.700.000341
ORF1ab/nsp4401R401HcGtcAt11B.1.1570.002985
ORF1ab/nsp4401R401RcgTcgC11B.1.1600.000031
ORF1ab/nsp4401R401LcGtcTt11B.1.1600.000031
ORF1ab/nsp4401R401LcGtcTt11B.1.160.220.006757
ORF1ab/nsp4401R401RcgTcgC11B.1.160.290.004219
ORF1ab/nsp4401R401HcGtcAt11B.1.1770.000013
ORF1ab/nsp4401R401delCGT---11B.1.177.110.001698
ORF1ab/nsp4401R401RcgTcgC11B.1.177.160.000664
ORF1ab/nsp4401R401delCGT---11B.1.177.160.000664
ORF1ab/nsp4401R401delCGT---11B.1.177.170.000821
ORF1ab/nsp4401R401delCGT---11B.1.177.40.000211
ORF1ab/nsp4401R401delCGT---11B.1.177.540.000606
ORF1ab/nsp4401R401delCGT---11B.1.177.560.000668
ORF1ab/nsp4401R401delCGT---11B.1.177.690.001484
ORF1ab/nsp4401R401HcGtcAt11B.1.177.730.000566
ORF1ab/nsp4401R401delCGT---11B.1.177.760.002494
ORF1ab/nsp4401R401CCgtTgt11B.1.177.770.000726
ORF1ab/nsp4401R401del1Cgt-gt11B.1.20.000009
ORF1ab/nsp4401R401CCgtTgt11B.1.20.000009
ORF1ab/nsp4401R401HcGtcAt11B.1.2060.000816
ORF1ab/nsp4401R401LcGtcTt11B.1.2060.000816
ORF1ab/nsp4401R401SCgtAgt11B.1.214.20.0006
ORF1ab/nsp4401R401RcgTcgG11B.1.258.110.000396
ORF1ab/nsp4401R401delCGT---11B.1.258.30.001675
ORF1ab/nsp4401R401HcGtcAt11B.1.3560.001727
ORF1ab/nsp4401R401HcGtcAt11B.1.360.000146
ORF1ab/nsp4401R401HcGtcAt11B.1.36.290.000517
ORF1ab/nsp4401R401delCGT---11B.1.36.380.001642
ORF1ab/nsp4401R401RcgTcgC11B.1.3810.007812
ORF1ab/nsp4401R401del2cGTc--11B.1.3960.000706
ORF1ab/nsp4401R401CCgtTgt11B.1.3960.000706
ORF1ab/nsp4401R401HcGtcAt11B.1.3980.002976
ORF1ab/nsp4401R401RcgTcgA11B.1.4160.001269
ORF1ab/nsp4401R401HcGtcAt11B.1.4270.00005
ORF1ab/nsp4401R401LcGtcTt11B.1.4290.000024
ORF1ab/nsp4401R401PcGtcCt11B.1.4290.000024
ORF1ab/nsp4401R401HcGtcAt11B.1.4290.000024
ORF1ab/nsp4401R401HcGtcAt11B.1.4360.001029
ORF1ab/nsp4401R401RcgTcgG11B.1.466.20.000391
ORF1ab/nsp4401R401RcgTcgC11B.1.5090.000866
ORF1ab/nsp4401R401RcgTcgA11B.1.5680.001111
ORF1ab/nsp4401R401LcGtcTt11B.1.5750.000303
ORF1ab/nsp4401R401HcGtcAt11B.1.575.10.002439
ORF1ab/nsp4401R401CCgtTgt11B.1.5800.004065
ORF1ab/nsp4401R401CCgtTgt11B.1.5960.000087
ORF1ab/nsp4401R401HcGtcAt11B.1.5960.000087
ORF1ab/nsp4401R401delCGT---11B.1.617.10.000129
ORF1ab/nsp4401R401delCGT---11B.1.617.20.000004
ORF1ab/nsp4401R401CCgtTgt11B.1.617.20.000004
ORF1ab/nsp4401R401RcgTcgC11B.1.6200.000946
ORF1ab/nsp4401R401HcGtcAt11B.1.6280.000352
ORF1ab/nsp4401R401HcGtcAt11C.140.004329
ORF1ab/nsp4401R401delCGT---11C.350.000774
ORF1ab/nsp4401R401CCgtTgt11D.20.000075
ORF1ab/nsp4401R401HcGtcAt11D.20.000075
ORF1ab/nsp4401R401RcgTcgC11P.10.000016
ORF1ab/nsp4401R401HcGtcAt11Q.10.000126
ORF1ab/nsp4401R401delCGT---11Q.10.000126
ORF1ab/nsp4401R401delCGT---11U.30.003861