CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 401 | R401H | R3164H | nonsyn | cGt | cAt | 2197 | 2197 | 1 | 9755-9757 |
ORF1ab/nsp4 | 401 | R401R | R3164R | syn | cgT | cgC | 281 | 273 | 0.97153 | 9755-9757 |
ORF1ab/nsp4 | 401 | R401R | R3164R | syn | cgT | cgG | 281 | 5 | 0.0177936 | 9755-9757 |
ORF1ab/nsp4 | 401 | R401R | R3164R | syn | cgT | cgA | 281 | 3 | 0.0106762 | 9755-9757 |
ORF1ab/nsp4 | 401 | R401del | R3164del | del | CGT | --- | 100 | 100 | 1 | 9755-9757 |
ORF1ab/nsp4 | 401 | R401L | R3164L | nonsyn | cGt | cTt | 80 | 79 | 0.9875 | 9755-9757 |
ORF1ab/nsp4 | 401 | R401L | R3164L | nonsyn | cGT | cTC | 80 | 1 | 0.0125 | 9755-9757 |
ORF1ab/nsp4 | 401 | R401C | R3164C | nonsyn | Cgt | Tgt | 14 | 14 | 1 | 9755-9757 |
ORF1ab/nsp4 | 401 | R401S | R3164S | nonsyn | Cgt | Agt | 11 | 11 | 1 | 9755-9757 |
ORF1ab/nsp4 | 401 | R401del2 | R3164del2 | del | cGT | c-- | 8 | 7 | 0.875 | 9755-9757 |
ORF1ab/nsp4 | 401 | R401del2 | R3164del2 | del | CGt | --t | 8 | 1 | 0.125 | 9755-9757 |
ORF1ab/nsp4 | 401 | R401del1 | R3164del1 | del | cGt | c-t | 6 | 2 | 0.333333 | 9755-9757 |
ORF1ab/nsp4 | 401 | R401del1 | R3164del1 | del | CgT | Gg- | 6 | 2 | 0.333333 | 9755-9757 |
ORF1ab/nsp4 | 401 | R401del1 | R3164del1 | del | Cgt | -gt | 6 | 2 | 0.333333 | 9755-9757 |
ORF1ab/nsp4 | 401 | R401P | R3164P | nonsyn | cGt | cCt | 3 | 2 | 0.666667 | 9755-9757 |
ORF1ab/nsp4 | 401 | R401P | R3164P | nonsyn | cGT | cCA | 3 | 1 | 0.333333 | 9755-9757 |
ORF1ab/nsp4 | 401 | R401Q | R3164Q | nonsyn | cGT | cAG | 2 | 2 | 1 | 9755-9757 |
ORF1ab/nsp4 | 401 | R401G | R3164G | nonsyn | Cgt | Ggt | 2 | 2 | 1 | 9755-9757 |
ORF1ab/nsp4 | 401 | R401I | R3164I | nonsyn | CGt | ATt | 1 | 1 | 1 | 9755-9757 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 2197 | 2197 | All | 0.00042 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 847 | 847 | B.1.1.7 | 0.000758 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 469 | 469 | B.1.627 | 0.947475 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 291 | 291 | B.1.631 | 0.979798 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 273 | 281 | All | 0.000052 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgG | 5 | 281 | All | 0.000001 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgA | 3 | 281 | All | 0.000001 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 140 | 140 | B.1.1.528 | 0.673077 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 113 | 113 | B.1.139 | 0.082845 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 100 | 100 | All | 0.000019 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 91 | 91 | AY.4 | 0.000142 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 79 | 80 | All | 0.000015 |
ORF1ab/nsp4 | 401 | R401L | cGT | cTC | 1 | 80 | All | 0 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 51 | 51 | AY.118 | 0.003195 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 42 | 42 | B.1.1.7 | 0.000038 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 39 | 39 | B.1 | 0.000357 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 33 | 33 | B.1.160 | 0.001029 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 25 | 25 | AY.37 | 0.007901 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 24 | 24 | A.2.4 | 0.080808 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 21 | 21 | AY.3 | 0.000209 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 21 | 21 | B.1.1.7 | 0.000019 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 21 | 21 | B.1.351 | 0.000624 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 21 | 21 | B.1.576 | 0.019039 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 19 | 19 | AY.103 | 0.000118 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 15 | 15 | B.1.617.2 | 0.000056 |
ORF1ab/nsp4 | 401 | R401C | Cgt | Tgt | 14 | 14 | All | 0.000003 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 14 | 14 | AY.43 | 0.000062 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 14 | 14 | B.1.1 | 0.000254 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 11 | 12 | B.1 | 0.000101 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgG | 1 | 12 | B.1 | 0.000009 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 12 | 12 | B.1.177.85 | 0.065217 |
ORF1ab/nsp4 | 401 | R401S | Cgt | Agt | 11 | 11 | All | 0.000002 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 11 | 11 | B.1.1.519 | 0.000437 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 10 | 10 | B.1.177 | 0.000132 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp4 | 401 | R401del2 | cGT | c-- | 7 | 8 | All | 0.000001 |
ORF1ab/nsp4 | 401 | R401del2 | CGt | --t | 1 | 8 | All | 0 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 7 | 7 | AF.1 | 0.259259 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 6 | 6 | A.2.5 | 0.002994 |
ORF1ab/nsp4 | 401 | R401del1 | CgT | Gg- | 2 | 6 | All | 0 |
ORF1ab/nsp4 | 401 | R401del1 | Cgt | -gt | 2 | 6 | All | 0 |
ORF1ab/nsp4 | 401 | R401del1 | cGt | c-t | 2 | 6 | All | 0 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 6 | 6 | B.1.1.34 | 0.078947 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 2 | 5 | D.2 | 0.00015 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgG | 2 | 5 | D.2 | 0.00015 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgA | 1 | 5 | D.2 | 0.000075 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp4 | 401 | R401P | cGt | cCt | 2 | 3 | All | 0 |
ORF1ab/nsp4 | 401 | R401P | cGT | cCA | 1 | 3 | All | 0 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 3 | 3 | B.1.1.523 | 0.004687 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp4 | 401 | R401G | Cgt | Ggt | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 401 | R401Q | cGT | cAG | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 401 | R401S | Cgt | Agt | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 401 | R401del1 | CgT | Gg- | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp4 | 401 | R401G | Cgt | Ggt | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 401 | R401Q | cGT | cAG | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp4 | 401 | R401S | Cgt | Agt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp4 | 401 | R401C | Cgt | Tgt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 2 | 2 | B.1.1.241 | 0.004141 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp4 | 401 | R401S | Cgt | Agt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 401 | R401C | Cgt | Tgt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 2 | 2 | B.1.177.58 | 0.002663 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp4 | 401 | R401P | cGT | cCA | 1 | 2 | B.1.416 | 0.001269 |
ORF1ab/nsp4 | 401 | R401P | cGt | cCt | 1 | 2 | B.1.416 | 0.001269 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp4 | 401 | R401S | Cgt | Agt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 401 | R401del2 | cGT | c-- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp4 | 401 | R401I | CGt | ATt | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 401 | R401C | Cgt | Tgt | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 401 | R401del1 | cGt | c-t | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 401 | R401I | CGt | ATt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 401 | R401C | Cgt | Tgt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 401 | R401del2 | cGT | c-- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp4 | 401 | R401L | cGT | cTC | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 401 | R401del1 | Cgt | -gt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp4 | 401 | R401del2 | cGT | c-- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp4 | 401 | R401del2 | cGT | c-- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 401 | R401C | Cgt | Tgt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 401 | R401del1 | cGt | c-t | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 401 | R401S | Cgt | Agt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 401 | R401S | Cgt | Agt | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp4 | 401 | R401del2 | CGt | --t | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 1 | 1 | B.1.1.382 | 0.035714 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp4 | 401 | R401del2 | cGT | c-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 1 | 1 | B.1.160.22 | 0.006757 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp4 | 401 | R401C | Cgt | Tgt | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp4 | 401 | R401del1 | Cgt | -gt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 401 | R401C | Cgt | Tgt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp4 | 401 | R401S | Cgt | Agt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgG | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp4 | 401 | R401del2 | cGT | c-- | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp4 | 401 | R401C | Cgt | Tgt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgA | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 401 | R401P | cGt | cCt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgG | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgA | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp4 | 401 | R401L | cGt | cTt | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp4 | 401 | R401C | Cgt | Tgt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp4 | 401 | R401C | Cgt | Tgt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 401 | R401C | Cgt | Tgt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 401 | R401C | Cgt | Tgt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 401 | R401R | cgT | cgC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 401 | R401H | cGt | cAt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 401 | R401del | CGT | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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