CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 400

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4400R400SR3163SnonsynagAagC321132080.9990669752-9754
ORF1ab/nsp4400R400SR3163SnonsynagAagT321130.0009342889752-9754
ORF1ab/nsp4400R400KR3163KnonsynaGaaAa5345330.9981279752-9754
ORF1ab/nsp4400R400KR3163KnonsynaGAaAG53410.001872669752-9754
ORF1ab/nsp4400R400RR3163RsynagAagG2451280.5224499752-9754
ORF1ab/nsp4400R400RR3163RsynAgaCga2451160.4734699752-9754
ORF1ab/nsp4400R400RR3163RsynAgACgT24510.004081639752-9754
ORF1ab/nsp4400R400delR3163deldelAGA---969619752-9754
ORF1ab/nsp4400R400GR3163GnonsynAgaGga47450.9574479752-9754
ORF1ab/nsp4400R400GR3163GnonsynAgAGgC4710.02127669752-9754
ORF1ab/nsp4400R400GR3163GnonsynAgAGgG4710.02127669752-9754
ORF1ab/nsp4400R400IR3163InonsynaGaaTa222219752-9754
ORF1ab/nsp4400R400TR3163TnonsynaGaaCa640.6666679752-9754
ORF1ab/nsp4400R400TR3163TnonsynaGAaCT620.3333339752-9754
ORF1ab/nsp4400R400del1R3163del1delagAag-3319752-9754
ORF1ab/nsp4400R400XR3163XnonsynAgaTga3319752-9754
ORF1ab/nsp4400R400NR3163NnonsynaGAaAT320.6666679752-9754
ORF1ab/nsp4400R400NR3163NnonsynaGAaAC310.3333339752-9754
ORF1ab/nsp4400R400del2R3163del2delaGAa--2219752-9754
ORF1ab/nsp4400R400LR3163LnonsynAGaTTa2219752-9754
ORF1ab/nsp4400R400ER3163EnonsynAGAGAG210.59752-9754
ORF1ab/nsp4400R400ER3163EnonsynAGaGAa210.59752-9754
ORF1ab/nsp4400R400VR3163VnonsynAGAGTG1119752-9754

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4400R400SagAagC32083211All0.000614
ORF1ab/nsp4400R400SagAagT33211All0.000001
ORF1ab/nsp4400R400SagAagC27752775B.1.6280.977801
ORF1ab/nsp4400R400KaGaaAa533534All0.000102
ORF1ab/nsp4400R400KaGAaAG1534All0
ORF1ab/nsp4400R400SagAagC281281B.1.6340.962329
ORF1ab/nsp4400R400KaGaaAa256256B.1.1.5190.010166
ORF1ab/nsp4400R400RagAagG128245All0.000024
ORF1ab/nsp4400R400RAgaCga116245All0.000022
ORF1ab/nsp4400R400RAgACgT1245All0
ORF1ab/nsp4400R400delAGA---9696All0.000018
ORF1ab/nsp4400R400SagAagC8989B.10.000815
ORF1ab/nsp4400R400RagAagG7678AY.40.000118
ORF1ab/nsp4400R400RAgaCga278AY.40.000003
ORF1ab/nsp4400R400GAgaGga4547All0.000009
ORF1ab/nsp4400R400GAgAGgG147All0
ORF1ab/nsp4400R400GAgAGgC147All0
ORF1ab/nsp4400R400RAgaCga4243AY.250.000253
ORF1ab/nsp4400R400RagAagG143AY.250.000006
ORF1ab/nsp4400R400KaGaaAa4242B.1.1.70.000038
ORF1ab/nsp4400R400delAGA---4242B.1.1.70.000038
ORF1ab/nsp4400R400KaGaaAa3535B.1.617.20.000132
ORF1ab/nsp4400R400KaGaaAa3131AY.430.000137
ORF1ab/nsp4400R400RAgaCga2626AY.430.000115
ORF1ab/nsp4400R400KaGaaAa2424AY.40.000037
ORF1ab/nsp4400R400IaGaaTa2222All0.000004
ORF1ab/nsp4400R400SagAagC2121B.1.1.70.000019
ORF1ab/nsp4400R400KaGaaAa2020B.1.20.000176
ORF1ab/nsp4400R400GAgaGga1919B.1.1.70.000017
ORF1ab/nsp4400R400KaGaaAa1818AY.440.00011
ORF1ab/nsp4400R400RAgaCga1616B.1.20.000141
ORF1ab/nsp4400R400RagAagG1313AY.1030.000081
ORF1ab/nsp4400R400RagAagG1313B.1.617.20.000049
ORF1ab/nsp4400R400KaGaaAa1010AY.980.00079
ORF1ab/nsp4400R400delAGA---99B.1.1770.000119
ORF1ab/nsp4400R400RAgaCga69B.1.5250.000679
ORF1ab/nsp4400R400RagAagG39B.1.5250.000339
ORF1ab/nsp4400R400SagAagC99P.1.120.004356
ORF1ab/nsp4400R400KaGaaAa88AY.200.000311
ORF1ab/nsp4400R400KaGaaAa88AY.39.10.000317
ORF1ab/nsp4400R400RagAagG68B.1.1.70.000005
ORF1ab/nsp4400R400RAgaCga28B.1.1.70.000002
ORF1ab/nsp4400R400KaGaaAa77AY.250.000042
ORF1ab/nsp4400R400delAGA---77AY.40.000011
ORF1ab/nsp4400R400TaGaaCa46All0.000001
ORF1ab/nsp4400R400TaGAaCT26All0
ORF1ab/nsp4400R400SagAagC66AY.1030.000037
ORF1ab/nsp4400R400delAGA---66AY.4.50.000645
ORF1ab/nsp4400R400KaGaaAa66Q.10.000758
ORF1ab/nsp4400R400SagAagC55AY.40.000008
ORF1ab/nsp4400R400IaGaaTa55AY.40.000008
ORF1ab/nsp4400R400SagAagC55B.1.10.000091
ORF1ab/nsp4400R400GAgaGga45B.1.10.000073
ORF1ab/nsp4400R400GAgAGgG15B.1.10.000018
ORF1ab/nsp4400R400KaGaaAa55B.1.177.40.001055
ORF1ab/nsp4400R400RAgaCga34AY.1000.000138
ORF1ab/nsp4400R400RagAagG14AY.1000.000046
ORF1ab/nsp4400R400KaGaaAa44AY.1190.000141
ORF1ab/nsp4400R400RAgaCga44AY.4.40.001637
ORF1ab/nsp4400R400delAGA---44AY.430.000018
ORF1ab/nsp4400R400KaGaaAa44AY.98.10.000194
ORF1ab/nsp4400R400RAgaCga34B.10.000027
ORF1ab/nsp4400R400RagAagG14B.10.000009
ORF1ab/nsp4400R400KaGaaAa34B.1.10.000054
ORF1ab/nsp4400R400KaGAaAG14B.1.10.000018
ORF1ab/nsp4400R400GAgaGga44B.1.1.2940.005063
ORF1ab/nsp4400R400IaGaaTa44B.1.617.20.000015
ORF1ab/nsp4400R400SagAagC44B.1.6270.008081
ORF1ab/nsp4400R400KaGaaAa33A0.001161
ORF1ab/nsp4400R400XAgaTga33All0.000001
ORF1ab/nsp4400R400del1agAag-33All0.000001
ORF1ab/nsp4400R400NaGAaAT23All0
ORF1ab/nsp4400R400NaGAaAC13All0
ORF1ab/nsp4400R400KaGaaAa33AY.30.00003
ORF1ab/nsp4400R400RAgaCga33AY.3.10.000256
ORF1ab/nsp4400R400KaGaaAa33AY.390.000074
ORF1ab/nsp4400R400GAgaGga33AY.40.000005
ORF1ab/nsp4400R400RAgaCga33AY.440.000018
ORF1ab/nsp4400R400GAgaGga23AY.440.000012
ORF1ab/nsp4400R400GAgAGgC13AY.440.000006
ORF1ab/nsp4400R400TaGaaCa33B.10.000027
ORF1ab/nsp4400R400KaGaaAa33B.1.1.2220.000612
ORF1ab/nsp4400R400RagAagG33B.1.1770.00004
ORF1ab/nsp4400R400KaGaaAa33B.1.1770.00004
ORF1ab/nsp4400R400GAgaGga33B.1.617.20.000011
ORF1ab/nsp4400R400LAGaTTa220.111111
ORF1ab/nsp4400R400TaGAaCT220.111111
ORF1ab/nsp4400R400del2aGAa--22All0
ORF1ab/nsp4400R400LAGaTTa22All0
ORF1ab/nsp4400R400EAGAGAG12All0
ORF1ab/nsp4400R400EAGaGAa12All0
ORF1ab/nsp4400R400KaGaaAa22AY.1020.000053
ORF1ab/nsp4400R400KaGaaAa22AY.1030.000012
ORF1ab/nsp4400R400KaGaaAa22AY.260.000057
ORF1ab/nsp4400R400RagAagG12AY.30.00001
ORF1ab/nsp4400R400RAgaCga12AY.30.00001
ORF1ab/nsp4400R400IaGaaTa22AY.430.000009
ORF1ab/nsp4400R400KaGaaAa22AY.46.50.000397
ORF1ab/nsp4400R400RagAagG22B.1.10.000036
ORF1ab/nsp4400R400EAGAGAG12B.1.10.000018
ORF1ab/nsp4400R400EAGaGAa12B.1.10.000018
ORF1ab/nsp4400R400KaGaaAa22B.1.1.4340.000697
ORF1ab/nsp4400R400delAGA---22B.1.177.580.002663
ORF1ab/nsp4400R400SagAagC22B.1.177.730.001133
ORF1ab/nsp4400R400delAGA---22B.1.20.000018
ORF1ab/nsp4400R400RAgaCga22B.1.3490.00143
ORF1ab/nsp4400R400RagAagG22B.1.36.80.002
ORF1ab/nsp4400R400GAgaGga22B.1.5380.016129
ORF1ab/nsp4400R400SagAagC22B.1.5960.000174
ORF1ab/nsp4400R400KaGaaAa110.055556
ORF1ab/nsp4400R400delAGA---11AD.20.000219
ORF1ab/nsp4400R400VAGAGTG11All0
ORF1ab/nsp4400R400GAgaGga11AY.1000.000046
ORF1ab/nsp4400R400RAgaCga11AY.1020.000027
ORF1ab/nsp4400R400KaGaaAa11AY.1170.000085
ORF1ab/nsp4400R400KaGaaAa11AY.1180.000063
ORF1ab/nsp4400R400KaGaaAa11AY.120.20.001285
ORF1ab/nsp4400R400KaGaaAa11AY.130.000161
ORF1ab/nsp4400R400KaGaaAa11AY.140.000088
ORF1ab/nsp4400R400KaGaaAa11AY.160.00038
ORF1ab/nsp4400R400KaGaaAa11AY.16.10.00047
ORF1ab/nsp4400R400delAGA---11AY.190.00114
ORF1ab/nsp4400R400SagAagT11AY.250.000006
ORF1ab/nsp4400R400GAgaGga11AY.260.000028
ORF1ab/nsp4400R400KaGaaAa11AY.360.000148
ORF1ab/nsp4400R400RagAagG11AY.4.20.000022
ORF1ab/nsp4400R400delAGA---11AY.4.30.000842
ORF1ab/nsp4400R400KaGaaAa11AY.420.00004
ORF1ab/nsp4400R400NaGAaAC11AY.440.000006
ORF1ab/nsp4400R400IaGaaTa11AY.440.000006
ORF1ab/nsp4400R400KaGaaAa11AY.450.000122
ORF1ab/nsp4400R400del2aGAa--11AY.46.20.000635
ORF1ab/nsp4400R400IaGaaTa11AY.50.000021
ORF1ab/nsp4400R400KaGaaAa11AY.530.000288
ORF1ab/nsp4400R400KaGaaAa11AY.60.000041
ORF1ab/nsp4400R400delAGA---11AY.60.000041
ORF1ab/nsp4400R400delAGA---11AY.680.000274
ORF1ab/nsp4400R400IaGaaTa11AY.830.001724
ORF1ab/nsp4400R400NaGAaAT11AY.840.000437
ORF1ab/nsp4400R400delAGA---11AY.90.000068
ORF1ab/nsp4400R400KaGaaAa11AY.9.20.000037
ORF1ab/nsp4400R400SagAagC11AY.9.20.000037
ORF1ab/nsp4400R400delAGA---11AY.9.20.000037
ORF1ab/nsp4400R400IaGaaTa11AY.920.000287
ORF1ab/nsp4400R400GAgaGga11AY.980.000079
ORF1ab/nsp4400R400delAGA---11AY.99.10.001553
ORF1ab/nsp4400R400KaGaaAa11B0.000128
ORF1ab/nsp4400R400IaGaaTa11B.10.000009
ORF1ab/nsp4400R400GAgaGga11B.10.000009
ORF1ab/nsp4400R400XAgaTga11B.1.10.000018
ORF1ab/nsp4400R400del2aGAa--11B.1.10.000018
ORF1ab/nsp4400R400delAGA---11B.1.10.000018
ORF1ab/nsp4400R400SagAagC11B.1.1.1170.009709
ORF1ab/nsp4400R400NaGAaAT11B.1.1.1390.022727
ORF1ab/nsp4400R400SagAagT11B.1.1.1940.00495
ORF1ab/nsp4400R400SagAagC11B.1.1.2200.001859
ORF1ab/nsp4400R400RAgACgT11B.1.1.2910.000742
ORF1ab/nsp4400R400KaGaaAa11B.1.1.3060.000438
ORF1ab/nsp4400R400delAGA---11B.1.1.370.000193
ORF1ab/nsp4400R400RagAagG11B.1.1.500.000679
ORF1ab/nsp4400R400GAgaGga11B.1.1.5170.006803
ORF1ab/nsp4400R400TaGaaCa11B.1.1.70.000001
ORF1ab/nsp4400R400XAgaTga11B.1.1.70.000001
ORF1ab/nsp4400R400delAGA---11B.1.1.700.000341
ORF1ab/nsp4400R400del1agAag-11B.1.1770.000013
ORF1ab/nsp4400R400delAGA---11B.1.177.110.001698
ORF1ab/nsp4400R400del1agAag-11B.1.177.160.000664
ORF1ab/nsp4400R400delAGA---11B.1.177.170.000821
ORF1ab/nsp4400R400delAGA---11B.1.177.40.000211
ORF1ab/nsp4400R400del1agAag-11B.1.177.540.000606
ORF1ab/nsp4400R400RagAagG11B.1.177.560.000668
ORF1ab/nsp4400R400delAGA---11B.1.177.560.000668
ORF1ab/nsp4400R400delAGA---11B.1.177.690.001484
ORF1ab/nsp4400R400delAGA---11B.1.177.760.002494
ORF1ab/nsp4400R400GAgaGga11B.1.20.000009
ORF1ab/nsp4400R400IaGaaTa11B.1.20.000009
ORF1ab/nsp4400R400SagAagC11B.1.2410.000812
ORF1ab/nsp4400R400KaGaaAa11B.1.2430.00007
ORF1ab/nsp4400R400SagAagC11B.1.2470.014925
ORF1ab/nsp4400R400delAGA---11B.1.258.30.001675
ORF1ab/nsp4400R400KaGaaAa11B.1.3490.000715
ORF1ab/nsp4400R400SagAagC11B.1.3510.00003
ORF1ab/nsp4400R400KaGaaAa11B.1.3510.00003
ORF1ab/nsp4400R400KaGaaAa11B.1.3560.001727
ORF1ab/nsp4400R400delAGA---11B.1.36.380.001642
ORF1ab/nsp4400R400IaGaaTa11B.1.3670.000792
ORF1ab/nsp4400R400SagAagC11B.1.3750.00082
ORF1ab/nsp4400R400GAgaGga11B.1.416.10.001563
ORF1ab/nsp4400R400RAgaCga11B.1.4270.00005
ORF1ab/nsp4400R400KaGaaAa11B.1.4290.000024
ORF1ab/nsp4400R400KaGaaAa11B.1.4650.003802
ORF1ab/nsp4400R400IaGaaTa11B.1.4680.005714
ORF1ab/nsp4400R400RAgaCga11B.1.5260.000024
ORF1ab/nsp4400R400KaGaaAa11B.1.5750.000303
ORF1ab/nsp4400R400IaGaaTa11B.1.5880.00091
ORF1ab/nsp4400R400KaGaaAa11B.1.5880.00091
ORF1ab/nsp4400R400XAgaTga11B.1.5950.000261
ORF1ab/nsp4400R400KaGaaAa11B.1.5960.000087
ORF1ab/nsp4400R400RagAagG11B.1.5960.000087
ORF1ab/nsp4400R400delAGA---11B.1.617.10.000129
ORF1ab/nsp4400R400VAGAGTG11B.1.617.10.000129
ORF1ab/nsp4400R400delAGA---11B.1.617.20.000004
ORF1ab/nsp4400R400SagAagC11B.1.6190.000871
ORF1ab/nsp4400R400delAGA---11C.350.000774
ORF1ab/nsp4400R400RagAagG11C.360.000911
ORF1ab/nsp4400R400RagAagG11C.36.30.000567
ORF1ab/nsp4400R400KaGaaAa11C.370.000116
ORF1ab/nsp4400R400IaGaaTa11D.20.000075
ORF1ab/nsp4400R400SagAagT11D.20.000075
ORF1ab/nsp4400R400SagAagC11P.10.000016
ORF1ab/nsp4400R400KaGaaAa11P.1.70.000319
ORF1ab/nsp4400R400delAGA---11Q.10.000126
ORF1ab/nsp4400R400GAgaGga11Q.10.000126
ORF1ab/nsp4400R400IaGaaTa11Q.30.000145
ORF1ab/nsp4400R400delAGA---11U.30.003861