CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 400 | R400S | R3163S | nonsyn | agA | agC | 3211 | 3208 | 0.999066 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400S | R3163S | nonsyn | agA | agT | 3211 | 3 | 0.000934288 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400K | R3163K | nonsyn | aGa | aAa | 534 | 533 | 0.998127 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400K | R3163K | nonsyn | aGA | aAG | 534 | 1 | 0.00187266 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400R | R3163R | syn | agA | agG | 245 | 128 | 0.522449 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400R | R3163R | syn | Aga | Cga | 245 | 116 | 0.473469 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400R | R3163R | syn | AgA | CgT | 245 | 1 | 0.00408163 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400del | R3163del | del | AGA | --- | 96 | 96 | 1 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400G | R3163G | nonsyn | Aga | Gga | 47 | 45 | 0.957447 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400G | R3163G | nonsyn | AgA | GgC | 47 | 1 | 0.0212766 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400G | R3163G | nonsyn | AgA | GgG | 47 | 1 | 0.0212766 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400I | R3163I | nonsyn | aGa | aTa | 22 | 22 | 1 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400T | R3163T | nonsyn | aGa | aCa | 6 | 4 | 0.666667 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400T | R3163T | nonsyn | aGA | aCT | 6 | 2 | 0.333333 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400del1 | R3163del1 | del | agA | ag- | 3 | 3 | 1 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400X | R3163X | nonsyn | Aga | Tga | 3 | 3 | 1 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400N | R3163N | nonsyn | aGA | aAT | 3 | 2 | 0.666667 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400N | R3163N | nonsyn | aGA | aAC | 3 | 1 | 0.333333 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400del2 | R3163del2 | del | aGA | a-- | 2 | 2 | 1 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400L | R3163L | nonsyn | AGa | TTa | 2 | 2 | 1 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400E | R3163E | nonsyn | AGA | GAG | 2 | 1 | 0.5 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400E | R3163E | nonsyn | AGa | GAa | 2 | 1 | 0.5 | 9752-9754 |
ORF1ab/nsp4 | 400 | R400V | R3163V | nonsyn | AGA | GTG | 1 | 1 | 1 | 9752-9754 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 3208 | 3211 | All | 0.000614 |
ORF1ab/nsp4 | 400 | R400S | agA | agT | 3 | 3211 | All | 0.000001 |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 2775 | 2775 | B.1.628 | 0.977801 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 533 | 534 | All | 0.000102 |
ORF1ab/nsp4 | 400 | R400K | aGA | aAG | 1 | 534 | All | 0 |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 281 | 281 | B.1.634 | 0.962329 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 256 | 256 | B.1.1.519 | 0.010166 |
ORF1ab/nsp4 | 400 | R400R | agA | agG | 128 | 245 | All | 0.000024 |
ORF1ab/nsp4 | 400 | R400R | Aga | Cga | 116 | 245 | All | 0.000022 |
ORF1ab/nsp4 | 400 | R400R | AgA | CgT | 1 | 245 | All | 0 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 96 | 96 | All | 0.000018 |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 89 | 89 | B.1 | 0.000815 |
ORF1ab/nsp4 | 400 | R400R | agA | agG | 76 | 78 | AY.4 | 0.000118 |
ORF1ab/nsp4 | 400 | R400R | Aga | Cga | 2 | 78 | AY.4 | 0.000003 |
ORF1ab/nsp4 | 400 | R400G | Aga | Gga | 45 | 47 | All | 0.000009 |
ORF1ab/nsp4 | 400 | R400G | AgA | GgG | 1 | 47 | All | 0 |
ORF1ab/nsp4 | 400 | R400G | AgA | GgC | 1 | 47 | All | 0 |
ORF1ab/nsp4 | 400 | R400R | Aga | Cga | 42 | 43 | AY.25 | 0.000253 |
ORF1ab/nsp4 | 400 | R400R | agA | agG | 1 | 43 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 42 | 42 | B.1.1.7 | 0.000038 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 42 | 42 | B.1.1.7 | 0.000038 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 35 | 35 | B.1.617.2 | 0.000132 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 31 | 31 | AY.43 | 0.000137 |
ORF1ab/nsp4 | 400 | R400R | Aga | Cga | 26 | 26 | AY.43 | 0.000115 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 24 | 24 | AY.4 | 0.000037 |
ORF1ab/nsp4 | 400 | R400I | aGa | aTa | 22 | 22 | All | 0.000004 |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 21 | 21 | B.1.1.7 | 0.000019 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 20 | 20 | B.1.2 | 0.000176 |
ORF1ab/nsp4 | 400 | R400G | Aga | Gga | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 18 | 18 | AY.44 | 0.00011 |
ORF1ab/nsp4 | 400 | R400R | Aga | Cga | 16 | 16 | B.1.2 | 0.000141 |
ORF1ab/nsp4 | 400 | R400R | agA | agG | 13 | 13 | AY.103 | 0.000081 |
ORF1ab/nsp4 | 400 | R400R | agA | agG | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 10 | 10 | AY.98 | 0.00079 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp4 | 400 | R400R | Aga | Cga | 6 | 9 | B.1.525 | 0.000679 |
ORF1ab/nsp4 | 400 | R400R | agA | agG | 3 | 9 | B.1.525 | 0.000339 |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 9 | 9 | P.1.12 | 0.004356 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 8 | 8 | AY.20 | 0.000311 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 8 | 8 | AY.39.1 | 0.000317 |
ORF1ab/nsp4 | 400 | R400R | agA | agG | 6 | 8 | B.1.1.7 | 0.000005 |
ORF1ab/nsp4 | 400 | R400R | Aga | Cga | 2 | 8 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp4 | 400 | R400T | aGa | aCa | 4 | 6 | All | 0.000001 |
ORF1ab/nsp4 | 400 | R400T | aGA | aCT | 2 | 6 | All | 0 |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 6 | 6 | Q.1 | 0.000758 |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp4 | 400 | R400I | aGa | aTa | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp4 | 400 | R400G | Aga | Gga | 4 | 5 | B.1.1 | 0.000073 |
ORF1ab/nsp4 | 400 | R400G | AgA | GgG | 1 | 5 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 5 | 5 | B.1.177.4 | 0.001055 |
ORF1ab/nsp4 | 400 | R400R | Aga | Cga | 3 | 4 | AY.100 | 0.000138 |
ORF1ab/nsp4 | 400 | R400R | agA | agG | 1 | 4 | AY.100 | 0.000046 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp4 | 400 | R400R | Aga | Cga | 4 | 4 | AY.4.4 | 0.001637 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp4 | 400 | R400R | Aga | Cga | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp4 | 400 | R400R | agA | agG | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 3 | 4 | B.1.1 | 0.000054 |
ORF1ab/nsp4 | 400 | R400K | aGA | aAG | 1 | 4 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 400 | R400G | Aga | Gga | 4 | 4 | B.1.1.294 | 0.005063 |
ORF1ab/nsp4 | 400 | R400I | aGa | aTa | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 4 | 4 | B.1.627 | 0.008081 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 3 | 3 | A | 0.001161 |
ORF1ab/nsp4 | 400 | R400X | Aga | Tga | 3 | 3 | All | 0.000001 |
ORF1ab/nsp4 | 400 | R400del1 | agA | ag- | 3 | 3 | All | 0.000001 |
ORF1ab/nsp4 | 400 | R400N | aGA | aAT | 2 | 3 | All | 0 |
ORF1ab/nsp4 | 400 | R400N | aGA | aAC | 1 | 3 | All | 0 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp4 | 400 | R400R | Aga | Cga | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp4 | 400 | R400G | Aga | Gga | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp4 | 400 | R400R | Aga | Cga | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp4 | 400 | R400G | Aga | Gga | 2 | 3 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 400 | R400G | AgA | GgC | 1 | 3 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 400 | R400T | aGa | aCa | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp4 | 400 | R400R | agA | agG | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp4 | 400 | R400G | Aga | Gga | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp4 | 400 | R400L | AGa | TTa | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 400 | R400T | aGA | aCT | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 400 | R400del2 | aGA | a-- | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 400 | R400L | AGa | TTa | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 400 | R400E | AGA | GAG | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 400 | R400E | AGa | GAa | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp4 | 400 | R400R | agA | agG | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 400 | R400R | Aga | Cga | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 400 | R400I | aGa | aTa | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp4 | 400 | R400R | agA | agG | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp4 | 400 | R400E | AGA | GAG | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 400 | R400E | AGa | GAa | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 2 | 2 | B.1.177.58 | 0.002663 |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp4 | 400 | R400R | Aga | Cga | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp4 | 400 | R400R | agA | agG | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp4 | 400 | R400G | Aga | Gga | 2 | 2 | B.1.538 | 0.016129 |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp4 | 400 | R400V | AGA | GTG | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 400 | R400G | Aga | Gga | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp4 | 400 | R400R | Aga | Cga | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp4 | 400 | R400S | agA | agT | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 400 | R400G | Aga | Gga | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp4 | 400 | R400R | agA | agG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 400 | R400N | aGA | aAC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 400 | R400I | aGa | aTa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp4 | 400 | R400del2 | aGA | a-- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp4 | 400 | R400I | aGa | aTa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp4 | 400 | R400I | aGa | aTa | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp4 | 400 | R400N | aGA | aAT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 400 | R400I | aGa | aTa | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp4 | 400 | R400G | Aga | Gga | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 400 | R400I | aGa | aTa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 400 | R400G | Aga | Gga | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 400 | R400X | Aga | Tga | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 400 | R400del2 | aGA | a-- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp4 | 400 | R400N | aGA | aAT | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp4 | 400 | R400S | agA | agT | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp4 | 400 | R400R | AgA | CgT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 400 | R400R | agA | agG | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp4 | 400 | R400G | Aga | Gga | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp4 | 400 | R400T | aGa | aCa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 400 | R400X | Aga | Tga | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 400 | R400del1 | agA | ag- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp4 | 400 | R400del1 | agA | ag- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 400 | R400del1 | agA | ag- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp4 | 400 | R400R | agA | agG | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp4 | 400 | R400G | Aga | Gga | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 400 | R400I | aGa | aTa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp4 | 400 | R400I | aGa | aTa | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp4 | 400 | R400G | Aga | Gga | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp4 | 400 | R400R | Aga | Cga | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp4 | 400 | R400I | aGa | aTa | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp4 | 400 | R400R | Aga | Cga | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp4 | 400 | R400I | aGa | aTa | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp4 | 400 | R400X | Aga | Tga | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 400 | R400R | agA | agG | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 400 | R400V | AGA | GTG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 400 | R400R | agA | agG | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp4 | 400 | R400R | agA | agG | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 400 | R400I | aGa | aTa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 400 | R400S | agA | agT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 400 | R400S | agA | agC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 400 | R400K | aGa | aAa | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 400 | R400G | Aga | Gga | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 400 | R400I | aGa | aTa | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp4 | 400 | R400del | AGA | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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