CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 397 | Y397Y | Y3160Y | syn | taC | taT | 8615 | 8615 | 1 | 9743-9745 |
ORF1ab/nsp4 | 397 | Y397H | Y3160H | nonsyn | Tac | Cac | 131 | 131 | 1 | 9743-9745 |
ORF1ab/nsp4 | 397 | Y397C | Y3160C | nonsyn | tAc | tGc | 123 | 122 | 0.99187 | 9743-9745 |
ORF1ab/nsp4 | 397 | Y397C | Y3160C | nonsyn | tAC | tGT | 123 | 1 | 0.00813008 | 9743-9745 |
ORF1ab/nsp4 | 397 | Y397del | Y3160del | del | TAC | --- | 100 | 100 | 1 | 9743-9745 |
ORF1ab/nsp4 | 397 | Y397X | Y3160X | nonsyn | taC | taA | 8 | 8 | 1 | 9743-9745 |
ORF1ab/nsp4 | 397 | Y397F | Y3160F | nonsyn | tAc | tTc | 4 | 3 | 0.75 | 9743-9745 |
ORF1ab/nsp4 | 397 | Y397F | Y3160F | nonsyn | tAC | tTT | 4 | 1 | 0.25 | 9743-9745 |
ORF1ab/nsp4 | 397 | Y397del1 | Y3160del1 | del | Tac | -ac | 3 | 2 | 0.666667 | 9743-9745 |
ORF1ab/nsp4 | 397 | Y397L | Y3160L | nonsyn | tAC | tTG | 3 | 2 | 0.666667 | 9743-9745 |
ORF1ab/nsp4 | 397 | Y397L | Y3160L | nonsyn | tAC | tTA | 3 | 1 | 0.333333 | 9743-9745 |
ORF1ab/nsp4 | 397 | Y397del1 | Y3160del1 | del | taC | ta- | 3 | 1 | 0.333333 | 9743-9745 |
ORF1ab/nsp4 | 397 | Y397R | Y3160R | nonsyn | TAC | AGG | 2 | 2 | 1 | 9743-9745 |
ORF1ab/nsp4 | 397 | Y397K | Y3160K | nonsyn | TaC | AaG | 1 | 1 | 1 | 9743-9745 |
ORF1ab/nsp4 | 397 | Y397V | Y3160V | nonsyn | TAC | GTA | 1 | 1 | 1 | 9743-9745 |
ORF1ab/nsp4 | 397 | Y397N | Y3160N | nonsyn | Tac | Aac | 1 | 1 | 1 | 9743-9745 |
ORF1ab/nsp4 | 397 | Y397del2 | Y3160del2 | del | TAc | --c | 1 | 1 | 1 | 9743-9745 |
ORF1ab/nsp4 | 397 | Y397S | Y3160S | nonsyn | tAc | tCc | 1 | 1 | 1 | 9743-9745 |
ORF1ab/nsp4 | 397 | Y397T | Y3160T | nonsyn | TAc | ACc | 1 | 1 | 1 | 9743-9745 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 8615 | 8615 | All | 0.001648 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 3535 | 3535 | B.1.177.57 | 0.993257 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1646 | 1646 | B.1.177.54 | 0.998181 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1483 | 1483 | B.1.177.56 | 0.989987 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 427 | 427 | B.1.177.55 | 0.995338 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 403 | 403 | B.1.1.7 | 0.000361 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 131 | 131 | All | 0.000025 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 122 | 123 | All | 0.000023 |
ORF1ab/nsp4 | 397 | Y397C | tAC | tGT | 1 | 123 | All | 0 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 120 | 120 | B.1.617.2 | 0.000452 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 115 | 115 | P.1 | 0.001812 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 100 | 100 | All | 0.000019 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 96 | 96 | AY.43 | 0.000425 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 81 | 81 | AY.4 | 0.000126 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 58 | 58 | B.1.177 | 0.000764 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 58 | 58 | C.4 | 0.58 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 46 | 46 | B.1.1.519 | 0.001827 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 45 | 45 | B.1.1.7 | 0.00004 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 44 | 44 | V.1 | 1 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 41 | 41 | B.1.616 | 1 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 39 | 39 | B.1 | 0.000357 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 36 | 36 | AY.116.1 | 0.011211 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 33 | 33 | B.1.585 | 0.916667 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 30 | 30 | V.2 | 0.967742 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 26 | 26 | B.1.1.317 | 0.010704 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 26 | 26 | B.1.221 | 0.001847 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 25 | 25 | B.1.221 | 0.001776 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 21 | 21 | AY.5.4 | 0.005811 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 19 | 19 | AY.34.1 | 0.009689 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 19 | 19 | B.1.2 | 0.000167 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 18 | 18 | AY.103 | 0.000112 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 16 | 16 | B.1.628 | 0.005638 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 15 | 15 | B.1.243 | 0.001044 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 14 | 14 | B.1.177.18 | 0.016241 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 13 | 13 | AY.39 | 0.000321 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 13 | 13 | B.1.1 | 0.000236 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 13 | 13 | B.1.474 | 0.024715 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 12 | 12 | B.1.637 | 0.000877 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 11 | 11 | B.1.2 | 0.000097 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 9 | 9 | D.2 | 0.000675 |
ORF1ab/nsp4 | 397 | Y397X | taC | taA | 8 | 8 | All | 0.000002 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 8 | 8 | B.1.160.16 | 0.007435 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 7 | 7 | AY.4.5 | 0.000752 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 7 | 7 | AY.5.3 | 0.002362 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 6 | 6 | B.1.577 | 0.004124 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 5 | 5 | B | 0.000639 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 5 | 5 | B.1.142 | 0.014493 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 5 | 5 | L.3 | 0.01773 |
ORF1ab/nsp4 | 397 | Y397F | tAc | tTc | 3 | 4 | All | 0.000001 |
ORF1ab/nsp4 | 397 | Y397F | tAC | tTT | 1 | 4 | All | 0 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 4 | 4 | AY.37 | 0.001264 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 4 | 4 | B.40 | 0.001457 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp4 | 397 | Y397X | taC | taA | 3 | 3 | 0.166667 | |
ORF1ab/nsp4 | 397 | Y397L | tAC | tTG | 2 | 3 | All | 0 |
ORF1ab/nsp4 | 397 | Y397del1 | Tac | -ac | 2 | 3 | All | 0 |
ORF1ab/nsp4 | 397 | Y397del1 | taC | ta- | 1 | 3 | All | 0 |
ORF1ab/nsp4 | 397 | Y397L | tAC | tTA | 1 | 3 | All | 0 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 3 | 3 | B.1.399 | 0.005803 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 397 | Y397L | tAC | tTG | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 397 | Y397R | TAC | AGG | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | A.19 | 0.018868 |
ORF1ab/nsp4 | 397 | Y397R | TAC | AGG | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 2 | 2 | B | 0.000256 |
ORF1ab/nsp4 | 397 | Y397X | taC | taA | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | B.1.1.190 | 0.1 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | B.1.177.11 | 0.003396 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 2 | 2 | B.1.177.8 | 0.001505 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | B.1.36.26 | 0.005714 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | B.1.425 | 0.005988 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | B.1.426 | 0.002018 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 2 | 2 | B.1.505 | 0.008772 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp4 | 397 | Y397S | tAc | tCc | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 397 | Y397T | TAc | ACc | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 397 | Y397del2 | TAc | --c | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 397 | Y397V | TAC | GTA | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 397 | Y397N | Tac | Aac | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 397 | Y397K | TaC | AaG | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 397 | Y397X | taC | taA | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 397 | Y397F | tAc | tTc | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 397 | Y397T | TAc | ACc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 397 | Y397S | tAc | tCc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 397 | Y397X | taC | taA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 397 | Y397K | TaC | AaG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 397 | Y397F | tAc | tTc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 397 | Y397L | tAC | tTA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 397 | Y397del1 | Tac | -ac | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 1 | 1 | B.1.1.483 | 0.038462 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp4 | 397 | Y397del2 | TAc | --c | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 397 | Y397F | tAC | tTT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 397 | Y397del1 | Tac | -ac | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp4 | 397 | Y397C | tAC | tGT | 1 | 1 | B.1.177.55 | 0.002331 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 1 | 1 | B.1.229 | 0.009709 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp4 | 397 | Y397del1 | taC | ta- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 397 | Y397N | Tac | Aac | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp4 | 397 | Y397X | taC | taA | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp4 | 397 | Y397V | TAC | GTA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 397 | Y397C | tAc | tGc | 1 | 1 | B.1.81 | 0.021277 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 1 | 1 | B.4.6 | 0.016667 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp4 | 397 | Y397H | Tac | Cac | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 397 | Y397F | tAc | tTc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp4 | 397 | Y397del | TAC | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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