CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 397

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4397Y397YY3160YsyntaCtaT8615861519743-9745
ORF1ab/nsp4397Y397HY3160HnonsynTacCac13113119743-9745
ORF1ab/nsp4397Y397CY3160CnonsyntActGc1231220.991879743-9745
ORF1ab/nsp4397Y397CY3160CnonsyntACtGT12310.008130089743-9745
ORF1ab/nsp4397Y397delY3160deldelTAC---10010019743-9745
ORF1ab/nsp4397Y397XY3160XnonsyntaCtaA8819743-9745
ORF1ab/nsp4397Y397FY3160FnonsyntActTc430.759743-9745
ORF1ab/nsp4397Y397FY3160FnonsyntACtTT410.259743-9745
ORF1ab/nsp4397Y397del1Y3160del1delTac-ac320.6666679743-9745
ORF1ab/nsp4397Y397LY3160LnonsyntACtTG320.6666679743-9745
ORF1ab/nsp4397Y397LY3160LnonsyntACtTA310.3333339743-9745
ORF1ab/nsp4397Y397del1Y3160del1deltaCta-310.3333339743-9745
ORF1ab/nsp4397Y397RY3160RnonsynTACAGG2219743-9745
ORF1ab/nsp4397Y397KY3160KnonsynTaCAaG1119743-9745
ORF1ab/nsp4397Y397VY3160VnonsynTACGTA1119743-9745
ORF1ab/nsp4397Y397NY3160NnonsynTacAac1119743-9745
ORF1ab/nsp4397Y397del2Y3160del2delTAc--c1119743-9745
ORF1ab/nsp4397Y397SY3160SnonsyntActCc1119743-9745
ORF1ab/nsp4397Y397TY3160TnonsynTAcACc1119743-9745

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4397Y397YtaCtaT86158615All0.001648
ORF1ab/nsp4397Y397YtaCtaT35353535B.1.177.570.993257
ORF1ab/nsp4397Y397YtaCtaT16461646B.1.177.540.998181
ORF1ab/nsp4397Y397YtaCtaT14831483B.1.177.560.989987
ORF1ab/nsp4397Y397YtaCtaT427427B.1.177.550.995338
ORF1ab/nsp4397Y397YtaCtaT403403B.1.1.70.000361
ORF1ab/nsp4397Y397HTacCac131131All0.000025
ORF1ab/nsp4397Y397CtActGc122123All0.000023
ORF1ab/nsp4397Y397CtACtGT1123All0
ORF1ab/nsp4397Y397YtaCtaT120120B.1.617.20.000452
ORF1ab/nsp4397Y397YtaCtaT115115P.10.001812
ORF1ab/nsp4397Y397delTAC---100100All0.000019
ORF1ab/nsp4397Y397YtaCtaT9696AY.430.000425
ORF1ab/nsp4397Y397YtaCtaT8181AY.40.000126
ORF1ab/nsp4397Y397YtaCtaT5858B.1.1770.000764
ORF1ab/nsp4397Y397YtaCtaT5858C.40.58
ORF1ab/nsp4397Y397YtaCtaT4646B.1.1.5190.001827
ORF1ab/nsp4397Y397delTAC---4545B.1.1.70.00004
ORF1ab/nsp4397Y397YtaCtaT4444V.11
ORF1ab/nsp4397Y397HTacCac4141B.1.6161
ORF1ab/nsp4397Y397YtaCtaT3939B.10.000357
ORF1ab/nsp4397Y397YtaCtaT3636AY.116.10.011211
ORF1ab/nsp4397Y397YtaCtaT3333B.1.5850.916667
ORF1ab/nsp4397Y397YtaCtaT3030V.20.967742
ORF1ab/nsp4397Y397YtaCtaT2626B.1.1.3170.010704
ORF1ab/nsp4397Y397HTacCac2626B.1.2210.001847
ORF1ab/nsp4397Y397CtActGc2525B.1.2210.001776
ORF1ab/nsp4397Y397YtaCtaT2121AY.5.40.005811
ORF1ab/nsp4397Y397YtaCtaT1919AY.34.10.009689
ORF1ab/nsp4397Y397YtaCtaT1919B.1.20.000167
ORF1ab/nsp4397Y397YtaCtaT1818AY.1030.000112
ORF1ab/nsp4397Y397YtaCtaT1616B.1.6280.005638
ORF1ab/nsp4397Y397CtActGc1515B.1.2430.001044
ORF1ab/nsp4397Y397YtaCtaT1414B.1.177.180.016241
ORF1ab/nsp4397Y397YtaCtaT1313AY.390.000321
ORF1ab/nsp4397Y397CtActGc1313B.1.10.000236
ORF1ab/nsp4397Y397CtActGc1313B.1.4740.024715
ORF1ab/nsp4397Y397YtaCtaT1212AY.440.000073
ORF1ab/nsp4397Y397YtaCtaT1212B.1.6370.000877
ORF1ab/nsp4397Y397YtaCtaT1111AY.250.000066
ORF1ab/nsp4397Y397YtaCtaT1111B.1.10.0002
ORF1ab/nsp4397Y397HTacCac1111B.1.20.000097
ORF1ab/nsp4397Y397delTAC---99B.1.1770.000119
ORF1ab/nsp4397Y397CtActGc99D.20.000675
ORF1ab/nsp4397Y397XtaCtaA88All0.000002
ORF1ab/nsp4397Y397YtaCtaT88B.1.160.160.007435
ORF1ab/nsp4397Y397delTAC---77AY.40.000011
ORF1ab/nsp4397Y397delTAC---77AY.4.50.000752
ORF1ab/nsp4397Y397YtaCtaT77AY.50.000145
ORF1ab/nsp4397Y397YtaCtaT77AY.5.30.002362
ORF1ab/nsp4397Y397CtActGc77B.1.20.000062
ORF1ab/nsp4397Y397YtaCtaT66B.1.3510.000178
ORF1ab/nsp4397Y397YtaCtaT66B.1.5770.004124
ORF1ab/nsp4397Y397YtaCtaT55AY.470.000156
ORF1ab/nsp4397Y397HTacCac55B0.000639
ORF1ab/nsp4397Y397HTacCac55B.1.1.280.001556
ORF1ab/nsp4397Y397HTacCac55B.1.1420.014493
ORF1ab/nsp4397Y397CtActGc55L.30.01773
ORF1ab/nsp4397Y397FtActTc34All0.000001
ORF1ab/nsp4397Y397FtACtTT14All0
ORF1ab/nsp4397Y397YtaCtaT44AY.260.000113
ORF1ab/nsp4397Y397YtaCtaT44AY.30.00004
ORF1ab/nsp4397Y397YtaCtaT44AY.370.001264
ORF1ab/nsp4397Y397delTAC---44AY.430.000018
ORF1ab/nsp4397Y397YtaCtaT44AY.99.20.000369
ORF1ab/nsp4397Y397YtaCtaT44B.1.1.10.001307
ORF1ab/nsp4397Y397YtaCtaT44B.1.2580.000266
ORF1ab/nsp4397Y397YtaCtaT44B.1.6210.000354
ORF1ab/nsp4397Y397CtActGc44B.400.001457
ORF1ab/nsp4397Y397YtaCtaT44C.370.000464
ORF1ab/nsp4397Y397XtaCtaA330.166667
ORF1ab/nsp4397Y397LtACtTG23All0
ORF1ab/nsp4397Y397del1Tac-ac23All0
ORF1ab/nsp4397Y397del1taCta-13All0
ORF1ab/nsp4397Y397LtACtTA13All0
ORF1ab/nsp4397Y397HTacCac33AY.50.000062
ORF1ab/nsp4397Y397YtaCtaT33AY.530.000863
ORF1ab/nsp4397Y397YtaCtaT33AY.70.000588
ORF1ab/nsp4397Y397YtaCtaT33AY.90.000203
ORF1ab/nsp4397Y397CtActGc33B.10.000027
ORF1ab/nsp4397Y397CtActGc33B.1.1770.00004
ORF1ab/nsp4397Y397CtActGc33B.1.3990.005803
ORF1ab/nsp4397Y397YtaCtaT33B.1.5610.001191
ORF1ab/nsp4397Y397YtaCtaT33P.1.140.000143
ORF1ab/nsp4397Y397YtaCtaT33Q.40.001364
ORF1ab/nsp4397Y397CtActGc220.111111
ORF1ab/nsp4397Y397LtACtTG220.111111
ORF1ab/nsp4397Y397RTACAGG220.111111
ORF1ab/nsp4397Y397YtaCtaT22A.190.018868
ORF1ab/nsp4397Y397RTACAGG22All0
ORF1ab/nsp4397Y397YtaCtaT22AY.1020.000053
ORF1ab/nsp4397Y397YtaCtaT22AY.1190.000071
ORF1ab/nsp4397Y397HTacCac22AY.30.00002
ORF1ab/nsp4397Y397YtaCtaT22AY.330.000134
ORF1ab/nsp4397Y397YtaCtaT22AY.39.10.000079
ORF1ab/nsp4397Y397YtaCtaT22AY.4.20.000043
ORF1ab/nsp4397Y397YtaCtaT22AY.46.20.001271
ORF1ab/nsp4397Y397delTAC---22AY.99.10.003106
ORF1ab/nsp4397Y397CtActGc22B0.000256
ORF1ab/nsp4397Y397XtaCtaA22B.10.000018
ORF1ab/nsp4397Y397YtaCtaT22B.1.1.1900.1
ORF1ab/nsp4397Y397CtActGc22B.1.1.2160.001781
ORF1ab/nsp4397Y397YtaCtaT22B.1.1.2220.000408
ORF1ab/nsp4397Y397YtaCtaT22B.1.1.3060.000877
ORF1ab/nsp4397Y397CtActGc22B.1.1.5190.000079
ORF1ab/nsp4397Y397HTacCac22B.1.1.70.000002
ORF1ab/nsp4397Y397CtActGc22B.1.1600.000062
ORF1ab/nsp4397Y397HTacCac22B.1.1600.000062
ORF1ab/nsp4397Y397HTacCac22B.1.1770.000026
ORF1ab/nsp4397Y397YtaCtaT22B.1.177.110.003396
ORF1ab/nsp4397Y397delTAC---22B.1.177.40.000422
ORF1ab/nsp4397Y397HTacCac22B.1.177.80.001505
ORF1ab/nsp4397Y397delTAC---22B.1.20.000018
ORF1ab/nsp4397Y397YtaCtaT22B.1.2390.002442
ORF1ab/nsp4397Y397YtaCtaT22B.1.36.260.005714
ORF1ab/nsp4397Y397YtaCtaT22B.1.4250.005988
ORF1ab/nsp4397Y397YtaCtaT22B.1.4260.002018
ORF1ab/nsp4397Y397CtActGc22B.1.5050.008772
ORF1ab/nsp4397Y397HTacCac22B.1.5090.001732
ORF1ab/nsp4397Y397CtActGc22B.1.5770.001375
ORF1ab/nsp4397Y397YtaCtaT22B.1.5950.000522
ORF1ab/nsp4397Y397YtaCtaT22B.1.6230.001073
ORF1ab/nsp4397Y397HTacCac22B.400.000729
ORF1ab/nsp4397Y397HTacCac22D.20.00015
ORF1ab/nsp4397Y397YtaCtaT11A0.000387
ORF1ab/nsp4397Y397delTAC---11AD.20.000219
ORF1ab/nsp4397Y397StActCc11All0
ORF1ab/nsp4397Y397TTAcACc11All0
ORF1ab/nsp4397Y397del2TAc--c11All0
ORF1ab/nsp4397Y397VTACGTA11All0
ORF1ab/nsp4397Y397NTacAac11All0
ORF1ab/nsp4397Y397KTaCAaG11All0
ORF1ab/nsp4397Y397YtaCtaT11AY.1160.000287
ORF1ab/nsp4397Y397YtaCtaT11AY.1170.000085
ORF1ab/nsp4397Y397HTacCac11AY.1200.000037
ORF1ab/nsp4397Y397YtaCtaT11AY.160.00038
ORF1ab/nsp4397Y397delTAC---11AY.190.00114
ORF1ab/nsp4397Y397YtaCtaT11AY.200.000039
ORF1ab/nsp4397Y397YtaCtaT11AY.230.00007
ORF1ab/nsp4397Y397XtaCtaA11AY.250.000006
ORF1ab/nsp4397Y397HTacCac11AY.250.000006
ORF1ab/nsp4397Y397YtaCtaT11AY.290.000016
ORF1ab/nsp4397Y397HTacCac11AY.39.10.00004
ORF1ab/nsp4397Y397delTAC---11AY.4.30.000842
ORF1ab/nsp4397Y397YtaCtaT11AY.420.00004
ORF1ab/nsp4397Y397HTacCac11AY.430.000004
ORF1ab/nsp4397Y397FtActTc11AY.46.20.000635
ORF1ab/nsp4397Y397HTacCac11AY.46.60.000072
ORF1ab/nsp4397Y397YtaCtaT11AY.46.60.000072
ORF1ab/nsp4397Y397delTAC---11AY.60.000041
ORF1ab/nsp4397Y397YtaCtaT11AY.620.000436
ORF1ab/nsp4397Y397HTacCac11AY.670.000464
ORF1ab/nsp4397Y397YtaCtaT11AY.680.000274
ORF1ab/nsp4397Y397delTAC---11AY.680.000274
ORF1ab/nsp4397Y397YtaCtaT11AY.710.000475
ORF1ab/nsp4397Y397YtaCtaT11AY.750.000056
ORF1ab/nsp4397Y397YtaCtaT11AY.75.10.00018
ORF1ab/nsp4397Y397CtActGc11AY.790.001211
ORF1ab/nsp4397Y397delTAC---11AY.90.000068
ORF1ab/nsp4397Y397YtaCtaT11AY.9.10.000084
ORF1ab/nsp4397Y397YtaCtaT11AY.9.20.000037
ORF1ab/nsp4397Y397YtaCtaT11AY.980.000079
ORF1ab/nsp4397Y397delTAC---11AY.990.001049
ORF1ab/nsp4397Y397YtaCtaT11B0.000128
ORF1ab/nsp4397Y397HTacCac11B.10.000009
ORF1ab/nsp4397Y397TTAcACc11B.10.000009
ORF1ab/nsp4397Y397StActCc11B.10.000009
ORF1ab/nsp4397Y397delTAC---11B.1.10.000018
ORF1ab/nsp4397Y397XtaCtaA11B.1.10.000018
ORF1ab/nsp4397Y397KTaCAaG11B.1.10.000018
ORF1ab/nsp4397Y397FtActTc11B.1.10.000018
ORF1ab/nsp4397Y397LtACtTA11B.1.10.000018
ORF1ab/nsp4397Y397del1Tac-ac11B.1.1.1390.022727
ORF1ab/nsp4397Y397YtaCtaT11B.1.1.1410.002012
ORF1ab/nsp4397Y397YtaCtaT11B.1.1.2140.000055
ORF1ab/nsp4397Y397YtaCtaT11B.1.1.3110.000358
ORF1ab/nsp4397Y397delTAC---11B.1.1.370.000193
ORF1ab/nsp4397Y397YtaCtaT11B.1.1.370.000193
ORF1ab/nsp4397Y397YtaCtaT11B.1.1.3720.000689
ORF1ab/nsp4397Y397YtaCtaT11B.1.1.410.006329
ORF1ab/nsp4397Y397HTacCac11B.1.1.4340.000349
ORF1ab/nsp4397Y397YtaCtaT11B.1.1.4340.000349
ORF1ab/nsp4397Y397YtaCtaT11B.1.1.4640.001473
ORF1ab/nsp4397Y397HTacCac11B.1.1.4830.038462
ORF1ab/nsp4397Y397YtaCtaT11B.1.1.4870.005587
ORF1ab/nsp4397Y397del2TAc--c11B.1.1.70.000001
ORF1ab/nsp4397Y397FtACtTT11B.1.1.70.000001
ORF1ab/nsp4397Y397delTAC---11B.1.1.700.000341
ORF1ab/nsp4397Y397CtActGc11B.1.1.80.003584
ORF1ab/nsp4397Y397YtaCtaT11B.1.130.002375
ORF1ab/nsp4397Y397YtaCtaT11B.1.1600.000031
ORF1ab/nsp4397Y397del1Tac-ac11B.1.1770.000013
ORF1ab/nsp4397Y397delTAC---11B.1.177.110.001698
ORF1ab/nsp4397Y397YtaCtaT11B.1.177.160.000664
ORF1ab/nsp4397Y397delTAC---11B.1.177.170.000821
ORF1ab/nsp4397Y397HTacCac11B.1.177.210.000076
ORF1ab/nsp4397Y397YtaCtaT11B.1.177.40.000211
ORF1ab/nsp4397Y397HTacCac11B.1.177.530.002392
ORF1ab/nsp4397Y397CtACtGT11B.1.177.550.002331
ORF1ab/nsp4397Y397delTAC---11B.1.177.560.000668
ORF1ab/nsp4397Y397delTAC---11B.1.177.580.001332
ORF1ab/nsp4397Y397delTAC---11B.1.177.690.001484
ORF1ab/nsp4397Y397delTAC---11B.1.177.760.002494
ORF1ab/nsp4397Y397CtActGc11B.1.177.80.000752
ORF1ab/nsp4397Y397YtaCtaT11B.1.177.820.000477
ORF1ab/nsp4397Y397YtaCtaT11B.1.177.860.000183
ORF1ab/nsp4397Y397HTacCac11B.1.2290.009709
ORF1ab/nsp4397Y397YtaCtaT11B.1.2340.000132
ORF1ab/nsp4397Y397YtaCtaT11B.1.2400.000216
ORF1ab/nsp4397Y397delTAC---11B.1.258.30.001675
ORF1ab/nsp4397Y397YtaCtaT11B.1.3240.001605
ORF1ab/nsp4397Y397del1taCta-11B.1.3510.00003
ORF1ab/nsp4397Y397NTacAac11B.1.3510.00003
ORF1ab/nsp4397Y397YtaCtaT11B.1.351.30.000876
ORF1ab/nsp4397Y397CtActGc11B.1.3560.001727
ORF1ab/nsp4397Y397YtaCtaT11B.1.36.170.000494
ORF1ab/nsp4397Y397delTAC---11B.1.36.380.001642
ORF1ab/nsp4397Y397CtActGc11B.1.3710.001122
ORF1ab/nsp4397Y397HTacCac11B.1.3960.000706
ORF1ab/nsp4397Y397CtActGc11B.1.416.10.001563
ORF1ab/nsp4397Y397CtActGc11B.1.4290.000024
ORF1ab/nsp4397Y397HTacCac11B.1.4290.000024
ORF1ab/nsp4397Y397YtaCtaT11B.1.466.20.000391
ORF1ab/nsp4397Y397YtaCtaT11B.1.4700.001404
ORF1ab/nsp4397Y397YtaCtaT11B.1.5260.000024
ORF1ab/nsp4397Y397YtaCtaT11B.1.5400.009709
ORF1ab/nsp4397Y397YtaCtaT11B.1.575.10.002439
ORF1ab/nsp4397Y397HTacCac11B.1.5760.000907
ORF1ab/nsp4397Y397XtaCtaA11B.1.5800.004065
ORF1ab/nsp4397Y397YtaCtaT11B.1.5970.00463
ORF1ab/nsp4397Y397VTACGTA11B.1.617.10.000129
ORF1ab/nsp4397Y397delTAC---11B.1.617.10.000129
ORF1ab/nsp4397Y397delTAC---11B.1.617.20.000004
ORF1ab/nsp4397Y397CtActGc11B.1.810.021277
ORF1ab/nsp4397Y397HTacCac11B.390.002331
ORF1ab/nsp4397Y397HTacCac11B.4.60.016667
ORF1ab/nsp4397Y397YtaCtaT11B.450.003831
ORF1ab/nsp4397Y397HTacCac11B.60.00091
ORF1ab/nsp4397Y397HTacCac11C.350.000774
ORF1ab/nsp4397Y397FtActTc11D.20.000075
ORF1ab/nsp4397Y397YtaCtaT11P.1.150.000232
ORF1ab/nsp4397Y397YtaCtaT11P.1.17.10.000875
ORF1ab/nsp4397Y397YtaCtaT11P.1.70.000319
ORF1ab/nsp4397Y397delTAC---11Q.10.000126
ORF1ab/nsp4397Y397YtaCtaT11Q.80.000165
ORF1ab/nsp4397Y397YtaCtaT11R.10.00009
ORF1ab/nsp4397Y397delTAC---11U.30.003861