CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 396

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4396N396NN3159NsynaaTaaC1803180319740-9742
ORF1ab/nsp4396N396delN3159deldelAAT---10410419740-9742
ORF1ab/nsp4396N396SN3159SnonsynaAtaGt888819740-9742
ORF1ab/nsp4396N396TN3159TnonsynaAtaCt86850.9883729740-9742
ORF1ab/nsp4396N396TN3159TnonsynaATaCC8610.01162799740-9742
ORF1ab/nsp4396N396HN3159HnonsynAatCat636319740-9742
ORF1ab/nsp4396N396YN3159YnonsynAatTat5519740-9742
ORF1ab/nsp4396N396DN3159DnonsynAatGat540.89740-9742
ORF1ab/nsp4396N396KN3159KnonsynaaTaaG530.69740-9742
ORF1ab/nsp4396N396KN3159KnonsynaaTaaA520.49740-9742
ORF1ab/nsp4396N396DN3159DnonsynAaTGaC510.29740-9742
ORF1ab/nsp4396N396IN3159InonsynaAtaTt3319740-9742
ORF1ab/nsp4396N396del1N3159del1delAAt-Tt310.3333339740-9742
ORF1ab/nsp4396N396del1N3159del1delAaT-aC310.3333339740-9742
ORF1ab/nsp4396N396del1N3159del1delAat-at310.3333339740-9742
ORF1ab/nsp4396N396LN3159LnonsynAATCTA2219740-9742
ORF1ab/nsp4396N396CN3159CnonsynAATTGC2219740-9742
ORF1ab/nsp4396N396VN3159VnonsynAATGTA2219740-9742
ORF1ab/nsp4396N396AN3159AnonsynAAtGCt1119740-9742
ORF1ab/nsp4396N396XN3159XnonsynAaTTaA1119740-9742

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4396N396NaaTaaC18031803All0.000345
ORF1ab/nsp4396N396NaaTaaC12131213B.1.2060.989396
ORF1ab/nsp4396N396NaaTaaC261261B.1.5460.966667
ORF1ab/nsp4396N396NaaTaaC167167B.10.00153
ORF1ab/nsp4396N396delAAT---104104All0.00002
ORF1ab/nsp4396N396SaAtaGt8888All0.000017
ORF1ab/nsp4396N396TaAtaCt8586All0.000016
ORF1ab/nsp4396N396TaATaCC186All0
ORF1ab/nsp4396N396HAatCat6363All0.000012
ORF1ab/nsp4396N396delAAT---4646B.1.1.70.000041
ORF1ab/nsp4396N396HAatCat3434B.1.20.000299
ORF1ab/nsp4396N396NaaTaaC2828AY.1030.000174
ORF1ab/nsp4396N396NaaTaaC2020B.1.1.3510.055866
ORF1ab/nsp4396N396SaAtaGt1919B.1.1770.00025
ORF1ab/nsp4396N396NaaTaaC1616B.1.10.00029
ORF1ab/nsp4396N396HAatCat1515B.1.1.5190.000596
ORF1ab/nsp4396N396TaAtaCt1414B.1.1770.000184
ORF1ab/nsp4396N396SaAtaGt1111AY.116.10.003426
ORF1ab/nsp4396N396NaaTaaC1111B.1.20.000097
ORF1ab/nsp4396N396delAAT---1010B.1.1770.000132
ORF1ab/nsp4396N396NaaTaaC1010B.1.5960.000871
ORF1ab/nsp4396N396NaaTaaC99B.1.1.70.000008
ORF1ab/nsp4396N396SaAtaGt99U.30.034749
ORF1ab/nsp4396N396TaAtaCt88B.10.000073
ORF1ab/nsp4396N396delAAT---77AY.40.000011
ORF1ab/nsp4396N396delAAT---77AY.4.50.000752
ORF1ab/nsp4396N396TaAtaCt77B.1.20.000062
ORF1ab/nsp4396N396SaAtaGt77B.1.20.000062
ORF1ab/nsp4396N396TaAtaCt66AY.30.00006
ORF1ab/nsp4396N396TaAtaCt66B.1.258.110.002378
ORF1ab/nsp4396N396YAatTat55All0.000001
ORF1ab/nsp4396N396DAatGat45All0.000001
ORF1ab/nsp4396N396KaaTaaG35All0.000001
ORF1ab/nsp4396N396KaaTaaA25All0
ORF1ab/nsp4396N396DAaTGaC15All0
ORF1ab/nsp4396N396SaAtaGt55AY.40.000008
ORF1ab/nsp4396N396HAatCat55AY.40.000008
ORF1ab/nsp4396N396TaAtaCt55B.1.617.20.000019
ORF1ab/nsp4396N396HAatCat55P.1.140.000239
ORF1ab/nsp4396N396NaaTaaC44AY.1080.00441
ORF1ab/nsp4396N396NaaTaaC44AY.40.000006
ORF1ab/nsp4396N396delAAT---44AY.430.000018
ORF1ab/nsp4396N396SaAtaGt44B.10.000037
ORF1ab/nsp4396N396NaaTaaC44B.1.1.3060.001754
ORF1ab/nsp4396N396SaAtaGt44B.1.1050.038462
ORF1ab/nsp4396N396NaaTaaC44B.1.1770.000053
ORF1ab/nsp4396N396TaAtaCt34B.400.001093
ORF1ab/nsp4396N396TaATaCC14B.400.000364
ORF1ab/nsp4396N396NaaTaaC44P.10.000063
ORF1ab/nsp4396N396YAatTat330.166667
ORF1ab/nsp4396N396IaAtaTt33All0.000001
ORF1ab/nsp4396N396del1Aat-at13All0
ORF1ab/nsp4396N396del1AAt-Tt13All0
ORF1ab/nsp4396N396del1AaT-aC13All0
ORF1ab/nsp4396N396TaAtaCt33AY.1030.000019
ORF1ab/nsp4396N396NaaTaaC33AY.430.000013
ORF1ab/nsp4396N396TaAtaCt33B.1.10.000054
ORF1ab/nsp4396N396TaAtaCt33B.1.1.330.001263
ORF1ab/nsp4396N396SaAtaGt33B.1.1.5150.06
ORF1ab/nsp4396N396NaaTaaC33B.1.466.10.021583
ORF1ab/nsp4396N396NaaTaaC33B.1.5950.000783
ORF1ab/nsp4396N396NaaTaaC33B.1.617.20.000011
ORF1ab/nsp4396N396TaAtaCt33P.10.000047
ORF1ab/nsp4396N396CAATTGC220.111111
ORF1ab/nsp4396N396LAATCTA220.111111
ORF1ab/nsp4396N396VAATGTA220.111111
ORF1ab/nsp4396N396TaAtaCt22AE.80.000978
ORF1ab/nsp4396N396CAATTGC22All0
ORF1ab/nsp4396N396LAATCTA22All0
ORF1ab/nsp4396N396VAATGTA22All0
ORF1ab/nsp4396N396SaAtaGt22AY.1030.000012
ORF1ab/nsp4396N396NaaTaaC22AY.1190.000071
ORF1ab/nsp4396N396NaaTaaC22AY.250.000012
ORF1ab/nsp4396N396delAAT---22AY.99.10.003106
ORF1ab/nsp4396N396TaAtaCt22B0.000256
ORF1ab/nsp4396N396SaAtaGt22B.1.10.000036
ORF1ab/nsp4396N396NaaTaaC22B.1.1.1610.007067
ORF1ab/nsp4396N396SaAtaGt22B.1.1600.000062
ORF1ab/nsp4396N396delAAT---22B.1.177.40.000422
ORF1ab/nsp4396N396NaaTaaC22B.1.177.600.000437
ORF1ab/nsp4396N396delAAT---22B.1.20.000018
ORF1ab/nsp4396N396TaAtaCt22B.1.2210.000142
ORF1ab/nsp4396N396TaAtaCt22B.1.4290.000047
ORF1ab/nsp4396N396HAatCat22B.1.5960.000174
ORF1ab/nsp4396N396KaaTaaG22B.1.617.10.000258
ORF1ab/nsp4396N396NaaTaaC22B.1.617.30.00597
ORF1ab/nsp4396N396NaaTaaC22D.20.00015
ORF1ab/nsp4396N396TaAtaCt22D.20.00015
ORF1ab/nsp4396N396KaaTaaA110.055556
ORF1ab/nsp4396N396XAaTTaA110.055556
ORF1ab/nsp4396N396delAAT---11AD.20.000219
ORF1ab/nsp4396N396XAaTTaA11All0
ORF1ab/nsp4396N396AAAtGCt11All0
ORF1ab/nsp4396N396TaAtaCt11AY.1020.000027
ORF1ab/nsp4396N396HAatCat11AY.1030.000006
ORF1ab/nsp4396N396delAAT---11AY.190.00114
ORF1ab/nsp4396N396NaaTaaC11AY.290.000016
ORF1ab/nsp4396N396NaaTaaC11AY.30.00001
ORF1ab/nsp4396N396SaAtaGt11AY.30.00001
ORF1ab/nsp4396N396NaaTaaC11AY.3.10.000085
ORF1ab/nsp4396N396TaAtaCt11AY.39.10.00004
ORF1ab/nsp4396N396TaAtaCt11AY.40.000002
ORF1ab/nsp4396N396delAAT---11AY.4.30.000842
ORF1ab/nsp4396N396SaAtaGt11AY.420.00004
ORF1ab/nsp4396N396SaAtaGt11AY.430.000004
ORF1ab/nsp4396N396KaaTaaA11AY.440.000006
ORF1ab/nsp4396N396SaAtaGt11AY.440.000006
ORF1ab/nsp4396N396NaaTaaC11AY.440.000006
ORF1ab/nsp4396N396NaaTaaC11AY.50.000021
ORF1ab/nsp4396N396NaaTaaC11AY.60.000041
ORF1ab/nsp4396N396delAAT---11AY.60.000041
ORF1ab/nsp4396N396SaAtaGt11AY.60.000041
ORF1ab/nsp4396N396SaAtaGt11AY.670.000464
ORF1ab/nsp4396N396delAAT---11AY.680.000274
ORF1ab/nsp4396N396delAAT---11AY.90.000068
ORF1ab/nsp4396N396SaAtaGt11AY.980.000079
ORF1ab/nsp4396N396delAAT---11AY.990.001049
ORF1ab/nsp4396N396NaaTaaC11AY.99.20.000092
ORF1ab/nsp4396N396NaaTaaC11B0.000128
ORF1ab/nsp4396N396KaaTaaG11B.10.000009
ORF1ab/nsp4396N396IaAtaTt11B.10.000009
ORF1ab/nsp4396N396delAAT---11B.10.000009
ORF1ab/nsp4396N396AAAtGCt11B.1.10.000018
ORF1ab/nsp4396N396DAatGat11B.1.10.000018
ORF1ab/nsp4396N396delAAT---11B.1.10.000018
ORF1ab/nsp4396N396delAAT---11B.1.1.1390.022727
ORF1ab/nsp4396N396YAatTat11B.1.1.1740.003378
ORF1ab/nsp4396N396NaaTaaC11B.1.1.2100.005714
ORF1ab/nsp4396N396SaAtaGt11B.1.1.2140.000055
ORF1ab/nsp4396N396delAAT---11B.1.1.2360.006897
ORF1ab/nsp4396N396SaAtaGt11B.1.1.3180.000302
ORF1ab/nsp4396N396NaaTaaC11B.1.1.3500.04
ORF1ab/nsp4396N396delAAT---11B.1.1.370.000193
ORF1ab/nsp4396N396NaaTaaC11B.1.1.4320.001266
ORF1ab/nsp4396N396SaAtaGt11B.1.1.500.000679
ORF1ab/nsp4396N396del1AAt-Tt11B.1.1.70.000001
ORF1ab/nsp4396N396IaAtaTt11B.1.1.70.000001
ORF1ab/nsp4396N396DAatGat11B.1.1.70.000001
ORF1ab/nsp4396N396delAAT---11B.1.1.700.000341
ORF1ab/nsp4396N396TaAtaCt11B.1.1600.000031
ORF1ab/nsp4396N396SaAtaGt11B.1.160.210.020408
ORF1ab/nsp4396N396delAAT---11B.1.177.110.001698
ORF1ab/nsp4396N396TaAtaCt11B.1.177.120.000152
ORF1ab/nsp4396N396delAAT---11B.1.177.170.000821
ORF1ab/nsp4396N396delAAT---11B.1.177.560.000668
ORF1ab/nsp4396N396TaAtaCt11B.1.177.570.000281
ORF1ab/nsp4396N396delAAT---11B.1.177.580.001332
ORF1ab/nsp4396N396delAAT---11B.1.177.690.001484
ORF1ab/nsp4396N396NaaTaaC11B.1.177.730.000566
ORF1ab/nsp4396N396delAAT---11B.1.177.760.002494
ORF1ab/nsp4396N396NaaTaaC11B.1.1940.04
ORF1ab/nsp4396N396del1Aat-at11B.1.2220.001692
ORF1ab/nsp4396N396SaAtaGt11B.1.2430.00007
ORF1ab/nsp4396N396delAAT---11B.1.258.30.001675
ORF1ab/nsp4396N396NaaTaaC11B.1.2840.013158
ORF1ab/nsp4396N396NaaTaaC11B.1.3110.000275
ORF1ab/nsp4396N396SaAtaGt11B.1.3490.000715
ORF1ab/nsp4396N396HAatCat11B.1.3510.00003
ORF1ab/nsp4396N396SaAtaGt11B.1.360.000146
ORF1ab/nsp4396N396delAAT---11B.1.36.380.001642
ORF1ab/nsp4396N396NaaTaaC11B.1.3610.001289
ORF1ab/nsp4396N396NaaTaaC11B.1.3690.000285
ORF1ab/nsp4396N396NaaTaaC11B.1.3850.010638
ORF1ab/nsp4396N396TaAtaCt11B.1.4040.001302
ORF1ab/nsp4396N396DAatGat11B.1.4290.000024
ORF1ab/nsp4396N396NaaTaaC11B.1.4290.000024
ORF1ab/nsp4396N396TaAtaCt11B.1.4330.003195
ORF1ab/nsp4396N396SaAtaGt11B.1.4740.001901
ORF1ab/nsp4396N396NaaTaaC11B.1.5640.000426
ORF1ab/nsp4396N396IaAtaTt11B.1.5690.014493
ORF1ab/nsp4396N396SaAtaGt11B.1.5750.000303
ORF1ab/nsp4396N396YAatTat11B.1.5760.000907
ORF1ab/nsp4396N396NaaTaaC11B.1.5820.000491
ORF1ab/nsp4396N396TaAtaCt11B.1.6050.005952
ORF1ab/nsp4396N396NaaTaaC11B.1.6060.006024
ORF1ab/nsp4396N396NaaTaaC11B.1.6090.000479
ORF1ab/nsp4396N396del1AaT-aC11B.1.617.20.000004
ORF1ab/nsp4396N396delAAT---11B.1.617.20.000004
ORF1ab/nsp4396N396DAatGat11B.1.617.20.000004
ORF1ab/nsp4396N396SaAtaGt11B.1.6230.000536
ORF1ab/nsp4396N396TaAtaCt11B.1.910.002075
ORF1ab/nsp4396N396TaAtaCt11B.30.000831
ORF1ab/nsp4396N396SaAtaGt11B.30.000831
ORF1ab/nsp4396N396TaAtaCt11B.300.014706
ORF1ab/nsp4396N396SaAtaGt11B.400.000364
ORF1ab/nsp4396N396TaAtaCt11B.470.020408
ORF1ab/nsp4396N396SaAtaGt11C.220.071429
ORF1ab/nsp4396N396DAaTGaC11C.350.000774
ORF1ab/nsp4396N396NaaTaaC11P.1.150.000232
ORF1ab/nsp4396N396delAAT---11Q.10.000126
ORF1ab/nsp4396N396delAAT---11U.30.003861
ORF1ab/nsp4396N396TaAtaCt11W.40.001351