CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 396 | N396N | N3159N | syn | aaT | aaC | 1803 | 1803 | 1 | 9740-9742 |
ORF1ab/nsp4 | 396 | N396del | N3159del | del | AAT | --- | 104 | 104 | 1 | 9740-9742 |
ORF1ab/nsp4 | 396 | N396S | N3159S | nonsyn | aAt | aGt | 88 | 88 | 1 | 9740-9742 |
ORF1ab/nsp4 | 396 | N396T | N3159T | nonsyn | aAt | aCt | 86 | 85 | 0.988372 | 9740-9742 |
ORF1ab/nsp4 | 396 | N396T | N3159T | nonsyn | aAT | aCC | 86 | 1 | 0.0116279 | 9740-9742 |
ORF1ab/nsp4 | 396 | N396H | N3159H | nonsyn | Aat | Cat | 63 | 63 | 1 | 9740-9742 |
ORF1ab/nsp4 | 396 | N396Y | N3159Y | nonsyn | Aat | Tat | 5 | 5 | 1 | 9740-9742 |
ORF1ab/nsp4 | 396 | N396D | N3159D | nonsyn | Aat | Gat | 5 | 4 | 0.8 | 9740-9742 |
ORF1ab/nsp4 | 396 | N396K | N3159K | nonsyn | aaT | aaG | 5 | 3 | 0.6 | 9740-9742 |
ORF1ab/nsp4 | 396 | N396K | N3159K | nonsyn | aaT | aaA | 5 | 2 | 0.4 | 9740-9742 |
ORF1ab/nsp4 | 396 | N396D | N3159D | nonsyn | AaT | GaC | 5 | 1 | 0.2 | 9740-9742 |
ORF1ab/nsp4 | 396 | N396I | N3159I | nonsyn | aAt | aTt | 3 | 3 | 1 | 9740-9742 |
ORF1ab/nsp4 | 396 | N396del1 | N3159del1 | del | AAt | -Tt | 3 | 1 | 0.333333 | 9740-9742 |
ORF1ab/nsp4 | 396 | N396del1 | N3159del1 | del | AaT | -aC | 3 | 1 | 0.333333 | 9740-9742 |
ORF1ab/nsp4 | 396 | N396del1 | N3159del1 | del | Aat | -at | 3 | 1 | 0.333333 | 9740-9742 |
ORF1ab/nsp4 | 396 | N396L | N3159L | nonsyn | AAT | CTA | 2 | 2 | 1 | 9740-9742 |
ORF1ab/nsp4 | 396 | N396C | N3159C | nonsyn | AAT | TGC | 2 | 2 | 1 | 9740-9742 |
ORF1ab/nsp4 | 396 | N396V | N3159V | nonsyn | AAT | GTA | 2 | 2 | 1 | 9740-9742 |
ORF1ab/nsp4 | 396 | N396A | N3159A | nonsyn | AAt | GCt | 1 | 1 | 1 | 9740-9742 |
ORF1ab/nsp4 | 396 | N396X | N3159X | nonsyn | AaT | TaA | 1 | 1 | 1 | 9740-9742 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1803 | 1803 | All | 0.000345 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1213 | 1213 | B.1.206 | 0.989396 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 261 | 261 | B.1.546 | 0.966667 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 167 | 167 | B.1 | 0.00153 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 104 | 104 | All | 0.00002 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 88 | 88 | All | 0.000017 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 85 | 86 | All | 0.000016 |
ORF1ab/nsp4 | 396 | N396T | aAT | aCC | 1 | 86 | All | 0 |
ORF1ab/nsp4 | 396 | N396H | Aat | Cat | 63 | 63 | All | 0.000012 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 46 | 46 | B.1.1.7 | 0.000041 |
ORF1ab/nsp4 | 396 | N396H | Aat | Cat | 34 | 34 | B.1.2 | 0.000299 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 28 | 28 | AY.103 | 0.000174 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 20 | 20 | B.1.1.351 | 0.055866 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 19 | 19 | B.1.177 | 0.00025 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 16 | 16 | B.1.1 | 0.00029 |
ORF1ab/nsp4 | 396 | N396H | Aat | Cat | 15 | 15 | B.1.1.519 | 0.000596 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 14 | 14 | B.1.177 | 0.000184 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 11 | 11 | AY.116.1 | 0.003426 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 11 | 11 | B.1.2 | 0.000097 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 10 | 10 | B.1.177 | 0.000132 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 10 | 10 | B.1.596 | 0.000871 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 9 | 9 | U.3 | 0.034749 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 7 | 7 | AY.4.5 | 0.000752 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 6 | 6 | B.1.258.11 | 0.002378 |
ORF1ab/nsp4 | 396 | N396Y | Aat | Tat | 5 | 5 | All | 0.000001 |
ORF1ab/nsp4 | 396 | N396D | Aat | Gat | 4 | 5 | All | 0.000001 |
ORF1ab/nsp4 | 396 | N396K | aaT | aaG | 3 | 5 | All | 0.000001 |
ORF1ab/nsp4 | 396 | N396K | aaT | aaA | 2 | 5 | All | 0 |
ORF1ab/nsp4 | 396 | N396D | AaT | GaC | 1 | 5 | All | 0 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp4 | 396 | N396H | Aat | Cat | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp4 | 396 | N396H | Aat | Cat | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 4 | 4 | AY.108 | 0.00441 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 4 | 4 | B.1.105 | 0.038462 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 3 | 4 | B.40 | 0.001093 |
ORF1ab/nsp4 | 396 | N396T | aAT | aCC | 1 | 4 | B.40 | 0.000364 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp4 | 396 | N396Y | Aat | Tat | 3 | 3 | 0.166667 | |
ORF1ab/nsp4 | 396 | N396I | aAt | aTt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp4 | 396 | N396del1 | Aat | -at | 1 | 3 | All | 0 |
ORF1ab/nsp4 | 396 | N396del1 | AAt | -Tt | 1 | 3 | All | 0 |
ORF1ab/nsp4 | 396 | N396del1 | AaT | -aC | 1 | 3 | All | 0 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 3 | 3 | B.1.1.515 | 0.06 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 3 | 3 | B.1.466.1 | 0.021583 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp4 | 396 | N396C | AAT | TGC | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 396 | N396L | AAT | CTA | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 396 | N396V | AAT | GTA | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp4 | 396 | N396C | AAT | TGC | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 396 | N396L | AAT | CTA | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 396 | N396V | AAT | GTA | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp4 | 396 | N396H | Aat | Cat | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp4 | 396 | N396K | aaT | aaG | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 2 | 2 | B.1.617.3 | 0.00597 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp4 | 396 | N396K | aaT | aaA | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 396 | N396X | AaT | TaA | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp4 | 396 | N396X | AaT | TaA | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 396 | N396A | AAt | GCt | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp4 | 396 | N396H | Aat | Cat | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 396 | N396K | aaT | aaA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 396 | N396K | aaT | aaG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 396 | N396I | aAt | aTt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 396 | N396A | AAt | GCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 396 | N396D | Aat | Gat | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp4 | 396 | N396Y | Aat | Tat | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | B.1.1.350 | 0.04 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp4 | 396 | N396del1 | AAt | -Tt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 396 | N396I | aAt | aTt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 396 | N396D | Aat | Gat | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 1 | 1 | B.1.160.21 | 0.020408 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | B.1.194 | 0.04 |
ORF1ab/nsp4 | 396 | N396del1 | Aat | -at | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp4 | 396 | N396H | Aat | Cat | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | B.1.385 | 0.010638 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp4 | 396 | N396D | Aat | Gat | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp4 | 396 | N396I | aAt | aTt | 1 | 1 | B.1.569 | 0.014493 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp4 | 396 | N396Y | Aat | Tat | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp4 | 396 | N396del1 | AaT | -aC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 396 | N396D | Aat | Gat | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 1 | 1 | B.30 | 0.014706 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 1 | 1 | B.47 | 0.020408 |
ORF1ab/nsp4 | 396 | N396S | aAt | aGt | 1 | 1 | C.22 | 0.071429 |
ORF1ab/nsp4 | 396 | N396D | AaT | GaC | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 396 | N396N | aaT | aaC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 396 | N396del | AAT | --- | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp4 | 396 | N396T | aAt | aCt | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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