CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 389 & Codon = caC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4389H389HH3152HsyncaTcaC75475419719-9721

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4389H389HcaTcaC754754All0.000144
ORF1ab/nsp4389H389HcaTcaC328328AW.11
ORF1ab/nsp4389H389HcaTcaC9898B.1.1.70.000088
ORF1ab/nsp4389H389HcaTcaC6161P.1.140.002916
ORF1ab/nsp4389H389HcaTcaC3131AY.40.000048
ORF1ab/nsp4389H389HcaTcaC2020B.1.1.4640.029455
ORF1ab/nsp4389H389HcaTcaC1919AY.90.001284
ORF1ab/nsp4389H389HcaTcaC1818AY.1030.000112
ORF1ab/nsp4389H389HcaTcaC1616B.1.1770.000211
ORF1ab/nsp4389H389HcaTcaC1414AY.430.000062
ORF1ab/nsp4389H389HcaTcaC1414B.1.20.000123
ORF1ab/nsp4389H389HcaTcaC1414B.1.617.20.000053
ORF1ab/nsp4389H389HcaTcaC1313AY.200.000505
ORF1ab/nsp4389H389HcaTcaC1313AY.330.000868
ORF1ab/nsp4389H389HcaTcaC1010B.10.000092
ORF1ab/nsp4389H389HcaTcaC99AY.230.000628
ORF1ab/nsp4389H389HcaTcaC99B.1.1.1920.020785
ORF1ab/nsp4389H389HcaTcaC55AY.470.000156
ORF1ab/nsp4389H389HcaTcaC44AY.1020.000106
ORF1ab/nsp4389H389HcaTcaC44AY.440.000024
ORF1ab/nsp4389H389HcaTcaC44B.1.5260.000094
ORF1ab/nsp4389H389HcaTcaC33AY.250.000018
ORF1ab/nsp4389H389HcaTcaC33AY.420.000121
ORF1ab/nsp4389H389HcaTcaC33AY.790.003632
ORF1ab/nsp4389H389HcaTcaC33B.1.10.000054
ORF1ab/nsp4389H389HcaTcaC33B.1.36.290.001552
ORF1ab/nsp4389H389HcaTcaC33P.10.000047
ORF1ab/nsp4389H389HcaTcaC220.111111
ORF1ab/nsp4389H389HcaTcaC22AY.39.10.000079
ORF1ab/nsp4389H389HcaTcaC22AY.50.000041
ORF1ab/nsp4389H389HcaTcaC22B.1.2580.000133
ORF1ab/nsp4389H389HcaTcaC22B.1.619.10.001283
ORF1ab/nsp4389H389HcaTcaC11AL.10.012987
ORF1ab/nsp4389H389HcaTcaC11AY.1040.001984
ORF1ab/nsp4389H389HcaTcaC11AY.1100.000113
ORF1ab/nsp4389H389HcaTcaC11AY.290.000016
ORF1ab/nsp4389H389HcaTcaC11AY.30.00001
ORF1ab/nsp4389H389HcaTcaC11AY.3.10.000085
ORF1ab/nsp4389H389HcaTcaC11AY.4.2.10.000149
ORF1ab/nsp4389H389HcaTcaC11AY.450.000122
ORF1ab/nsp4389H389HcaTcaC11AY.540.000095
ORF1ab/nsp4389H389HcaTcaC11AY.610.000105
ORF1ab/nsp4389H389HcaTcaC11AY.75.10.00018
ORF1ab/nsp4389H389HcaTcaC11AY.9.20.000037
ORF1ab/nsp4389H389HcaTcaC11B.1.1.280.000311
ORF1ab/nsp4389H389HcaTcaC11B.1.1670.007812
ORF1ab/nsp4389H389HcaTcaC11B.1.177.210.000076
ORF1ab/nsp4389H389HcaTcaC11B.1.177.600.000218
ORF1ab/nsp4389H389HcaTcaC11B.1.1890.004292
ORF1ab/nsp4389H389HcaTcaC11B.1.3200.001245
ORF1ab/nsp4389H389HcaTcaC11B.1.3510.00003
ORF1ab/nsp4389H389HcaTcaC11B.1.4270.00005
ORF1ab/nsp4389H389HcaTcaC11B.1.5960.000087
ORF1ab/nsp4389H389HcaTcaC11P.1.170.000162

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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