CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 380

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4380A380VA3143VnonsyngCtgTt19669196670.9998989692-9694
ORF1ab/nsp4380A380VA3143VnonsyngCTgTC1966920.0001016839692-9694
ORF1ab/nsp4380A380AA3143AsyngcTgcC2441850.7581979692-9694
ORF1ab/nsp4380A380AA3143AsyngcTgcG244540.2213119692-9694
ORF1ab/nsp4380A380AA3143AsyngcTgcA24450.02049189692-9694
ORF1ab/nsp4380A380TA3143TnonsynGctAct1851830.9891899692-9694
ORF1ab/nsp4380A380TA3143TnonsynGcTAcA18520.01081089692-9694
ORF1ab/nsp4380A380delA3143deldelGCT---11011019692-9694
ORF1ab/nsp4380A380SA3143SnonsynGctTct67640.9552249692-9694
ORF1ab/nsp4380A380SA3143SnonsynGCtAGt6720.02985079692-9694
ORF1ab/nsp4380A380SA3143SnonsynGcTTcA6710.01492549692-9694
ORF1ab/nsp4380A380DA3143DnonsyngCtgAt141419692-9694
ORF1ab/nsp4380A380IA3143InonsynGCtATt111119692-9694
ORF1ab/nsp4380A380LA3143LnonsynGCtCTt9919692-9694
ORF1ab/nsp4380A380PA3143PnonsynGctCct7719692-9694
ORF1ab/nsp4380A380GA3143GnonsyngCtgGt530.69692-9694
ORF1ab/nsp4380A380del1A3143del1delGct-ct530.69692-9694
ORF1ab/nsp4380A380GA3143GnonsyngCTgGA520.49692-9694
ORF1ab/nsp4380A380del1A3143del1delgCtg-t510.29692-9694
ORF1ab/nsp4380A380del1A3143del1delGCtA-t510.29692-9694
ORF1ab/nsp4380A380CA3143CnonsynGCtTGt4419692-9694
ORF1ab/nsp4380A380RA3143RnonsynGCTAGA3319692-9694
ORF1ab/nsp4380A380del2A3143del2delGCt--t320.6666679692-9694
ORF1ab/nsp4380A380del2A3143del2delGCT--C310.3333339692-9694
ORF1ab/nsp4380A380YA3143YnonsynGCtTAt1119692-9694
ORF1ab/nsp4380A380FA3143FnonsynGCtTTt1119692-9694
ORF1ab/nsp4380A380EA3143EnonsyngCTgAG1119692-9694

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4380A380VgCtgTt1966719669All0.003762
ORF1ab/nsp4380A380VgCTgTC219669All0
ORF1ab/nsp4380A380VgCtgTt38073807B.1.1.70.003408
ORF1ab/nsp4380A380VgCtgTt27972797B.1.6280.985553
ORF1ab/nsp4380A380VgCtgTt24232423AY.430.010735
ORF1ab/nsp4380A380VgCtgTt10891089B.1.177.461
ORF1ab/nsp4380A380VgCtgTt938938C.160.994698
ORF1ab/nsp4380A380VgCtgTt900900B.1.1.1530.985761
ORF1ab/nsp4380A380VgCtgTt508508AY.40.000791
ORF1ab/nsp4380A380VgCtgTt419419AY.250.00252
ORF1ab/nsp4380A380VgCtgTt397397B.1.2580.026419
ORF1ab/nsp4380A380VgCtgTt362362B.1.1.3060.158702
ORF1ab/nsp4380A380VgCtgTt296296B.1.1770.003898
ORF1ab/nsp4380A380VgCtgTt286286B.1.20.002518
ORF1ab/nsp4380A380VgCtgTt285285B.1.6340.976027
ORF1ab/nsp4380A380VgCtgTt284284B.10.002601
ORF1ab/nsp4380A380VgCtgTt267267B.1.617.20.001005
ORF1ab/nsp4380A380VgCtgTt263263P.41
ORF1ab/nsp4380A380VgCtgTt260260AY.46.60.018774
ORF1ab/nsp4380A380AgcTgcC185244All0.000035
ORF1ab/nsp4380A380AgcTgcG54244All0.00001
ORF1ab/nsp4380A380AgcTgcA5244All0.000001
ORF1ab/nsp4380A380TGctAct183185All0.000035
ORF1ab/nsp4380A380TGcTAcA2185All0
ORF1ab/nsp4380A380VgCtgTt168168B.1.177.820.080191
ORF1ab/nsp4380A380VgCtgTt164164AY.440.000998
ORF1ab/nsp4380A380VgCtgTt162162B.1.1.5210.86631
ORF1ab/nsp4380A380VgCtgTt156156B.1.160.121
ORF1ab/nsp4380A380VgCtgTt154155B.1.10.002794
ORF1ab/nsp4380A380VgCTgTC1155B.1.10.000018
ORF1ab/nsp4380A380VgCtgTt143143B.1.5700.420588
ORF1ab/nsp4380A380VgCtgTt125125B.1.1.3510.349162
ORF1ab/nsp4380A380VgCtgTt118118P.10.001859
ORF1ab/nsp4380A380delGCT---110110All0.000021
ORF1ab/nsp4380A380VgCtgTt9494AY.50.001941
ORF1ab/nsp4380A380VgCtgTt9090AY.30.000895
ORF1ab/nsp4380A380VgCtgTt8686AY.1030.000534
ORF1ab/nsp4380A380VgCtgTt8383AY.470.002582
ORF1ab/nsp4380A380VgCtgTt7979B.1.2430.005497
ORF1ab/nsp4380A380VgCtgTt7878AY.200.003031
ORF1ab/nsp4380A380VgCtgTt7878B.1.177.210.005965
ORF1ab/nsp4380A380VgCtgTt7676AY.390.001878
ORF1ab/nsp4380A380AgcTgcC7373B.1.5820.035819
ORF1ab/nsp4380A380VgCtgTt7070B.1.1600.002183
ORF1ab/nsp4380A380SGctTct6467All0.000012
ORF1ab/nsp4380A380SGCtAGt267All0
ORF1ab/nsp4380A380SGcTTcA167All0
ORF1ab/nsp4380A380AgcTgcG4766B.1.1.70.000042
ORF1ab/nsp4380A380AgcTgcC1866B.1.1.70.000016
ORF1ab/nsp4380A380AgcTgcA166B.1.1.70.000001
ORF1ab/nsp4380A380VgCtgTt6262B.1.3510.001843
ORF1ab/nsp4380A380VgCtgTt6161B.1.1.1410.122736
ORF1ab/nsp4380A380VgCtgTt6060AY.1020.001591
ORF1ab/nsp4380A380VgCtgTt5757AY.1190.002013
ORF1ab/nsp4380A380VgCtgTt5252AY.290.00082
ORF1ab/nsp4380A380delGCT---5151B.1.1.70.000046
ORF1ab/nsp4380A380VgCtgTt4747Q.80.007751
ORF1ab/nsp4380A380VgCtgTt4545B.1.1.5190.001787
ORF1ab/nsp4380A380VgCtgTt4343B.1.4270.002171
ORF1ab/nsp4380A380VgCtgTt4242AY.98.10.002034
ORF1ab/nsp4380A380VgCtgTt3737AY.930.010104
ORF1ab/nsp4380A380VgCtgTt3737B.1.1.2140.002052
ORF1ab/nsp4380A380VgCtgTt3434AY.420.001368
ORF1ab/nsp4380A380VgCtgTt3333B.1.360.004815
ORF1ab/nsp4380A380VgCtgTt3333C.370.00383
ORF1ab/nsp4380A380TGctAct3232AY.430.000142
ORF1ab/nsp4380A380VgCtgTt3232AY.9.10.002679
ORF1ab/nsp4380A380VgCtgTt3232B.1.1.3040.089888
ORF1ab/nsp4380A380VgCtgTt3131B.1.2210.002202
ORF1ab/nsp4380A380TGctAct3030B.10.000275
ORF1ab/nsp4380A380VgCtgTt3030B.1.1.2970.067114
ORF1ab/nsp4380A380VgCtgTt2929AY.260.000821
ORF1ab/nsp4380A380TGctAct2929B.1.1.700.009891
ORF1ab/nsp4380A380VgCtgTt2929P.1.70.009259
ORF1ab/nsp4380A380VgCtgTt2727AY.330.001803
ORF1ab/nsp4380A380VgCtgTt2727B.1.4290.000635
ORF1ab/nsp4380A380VgCtgTt2626B.1.5480.928571
ORF1ab/nsp4380A380VgCtgTt2626B.1.5950.006785
ORF1ab/nsp4380A380VgCtgTt2525B.1.177.790.058548
ORF1ab/nsp4380A380VgCtgTt2525B.1.4000.010725
ORF1ab/nsp4380A380AgcTgcC2323B.1.617.20.000087
ORF1ab/nsp4380A380VgCtgTt2323C.360.020947
ORF1ab/nsp4380A380VgCtgTt2222P.1.140.001052
ORF1ab/nsp4380A380VgCtgTt2121AY.4.20.000455
ORF1ab/nsp4380A380VgCtgTt2121B.1.588.10.807692
ORF1ab/nsp4380A380AgcTgcC2020B.1.20.000176
ORF1ab/nsp4380A380SGctTct1919AY.430.000084
ORF1ab/nsp4380A380VgCtgTt1919AY.80.011515
ORF1ab/nsp4380A380VgCtgTt1919B.1.5260.000447
ORF1ab/nsp4380A380VgCtgTt1818B.1.1.2910.013363
ORF1ab/nsp4380A380VgCtgTt1717AY.1180.001065
ORF1ab/nsp4380A380VgCtgTt1717AY.39.10.000673
ORF1ab/nsp4380A380VgCtgTt1717B.1.160.300.050595
ORF1ab/nsp4380A380VgCtgTt1717B.1.5960.001481
ORF1ab/nsp4380A380VgCtgTt1616AY.1000.000736
ORF1ab/nsp4380A380SGctTct1616AY.250.000096
ORF1ab/nsp4380A380VgCtgTt1616AY.340.001551
ORF1ab/nsp4380A380VgCtgTt1616B.1.1.280.00498
ORF1ab/nsp4380A380VgCtgTt1515AY.100.007949
ORF1ab/nsp4380A380VgCtgTt1515AY.1210.00203
ORF1ab/nsp4380A380VgCtgTt1515B.1.1.10.0049
ORF1ab/nsp4380A380VgCtgTt1515B.1.177.810.00284
ORF1ab/nsp4380A380VgCtgTt1515B.1.2410.012175
ORF1ab/nsp4380A380VgCtgTt1515B.1.3460.019659
ORF1ab/nsp4380A380DgCtgAt1414All0.000003
ORF1ab/nsp4380A380VgCtgTt1414AY.750.000784
ORF1ab/nsp4380A380VgCtgTt1414B.1.1.3400.636364
ORF1ab/nsp4380A380VgCtgTt1414B.1.177.860.002568
ORF1ab/nsp4380A380VgCtgTt1414B.1.2400.003018
ORF1ab/nsp4380A380TGctAct1414B.1.4290.000329
ORF1ab/nsp4380A380AgcTgcC1414P.10.000221
ORF1ab/nsp4380A380VgCtgTt1313AY.3.10.001108
ORF1ab/nsp4380A380VgCtgTt1313B.1.1110.015276
ORF1ab/nsp4380A380VgCtgTt1313P.1.120.006292
ORF1ab/nsp4380A380VgCtgTt1212B.1.1.2740.060606
ORF1ab/nsp4380A380VgCtgTt1212B.1.6060.072289
ORF1ab/nsp4380A380IGCtATt1111All0.000002
ORF1ab/nsp4380A380VgCtgTt1111AY.1160.003155
ORF1ab/nsp4380A380VgCtgTt1111AY.360.00163
ORF1ab/nsp4380A380VgCtgTt1111AY.460.001145
ORF1ab/nsp4380A380VgCtgTt1111B.1.4080.04059
ORF1ab/nsp4380A380SGctTct910B.1.1.70.000008
ORF1ab/nsp4380A380SGcTTcA110B.1.1.70.000001
ORF1ab/nsp4380A380TGctAct1010B.1.1600.000312
ORF1ab/nsp4380A380delGCT---1010B.1.1770.000132
ORF1ab/nsp4380A380VgCtgTt1010B.1.258.170.00104
ORF1ab/nsp4380A380LGCtCTt99All0.000002
ORF1ab/nsp4380A380VgCtgTt99AY.60.00037
ORF1ab/nsp4380A380VgCtgTt99B.1.1.3720.006198
ORF1ab/nsp4380A380LGCtCTt99B.1.1.70.000008
ORF1ab/nsp4380A380VgCtgTt99B.1.36.180.003782
ORF1ab/nsp4380A380VgCtgTt99B.1.3750.007377
ORF1ab/nsp4380A380VgCtgTt99B.1.6320.060403
ORF1ab/nsp4380A380VgCtgTt99Q.10.001137
ORF1ab/nsp4380A380VgCtgTt99Q.30.001305
ORF1ab/nsp4380A380VgCtgTt88AY.1130.001139
ORF1ab/nsp4380A380VgCtgTt88B0.001022
ORF1ab/nsp4380A380VgCtgTt88B.1.1.3680.024691
ORF1ab/nsp4380A380VgCtgTt88B.1.1.3750.095238
ORF1ab/nsp4380A380VgCtgTt88B.1.438.10.000858
ORF1ab/nsp4380A380VgCtgTt88B.1.617.10.001032
ORF1ab/nsp4380A380VgCtgTt77A0.002709
ORF1ab/nsp4380A380PGctCct77All0.000001
ORF1ab/nsp4380A380VgCtgTt77AY.140.000616
ORF1ab/nsp4380A380VgCtgTt77AY.230.000488
ORF1ab/nsp4380A380delGCT---77AY.40.000011
ORF1ab/nsp4380A380delGCT---77AY.4.50.000752
ORF1ab/nsp4380A380VgCtgTt77AY.90.000473
ORF1ab/nsp4380A380VgCtgTt77B.1.1.3050.027027
ORF1ab/nsp4380A380TGctAct77B.1.1.70.000006
ORF1ab/nsp4380A380VgCtgTt77B.1.36.290.003621
ORF1ab/nsp4380A380VgCtgTt77B.1.5170.002989
ORF1ab/nsp4380A380VgCtgTt77B.1.5250.000792
ORF1ab/nsp4380A380VgCtgTt77B.1.6270.014141
ORF1ab/nsp4380A380TGctAct460.222222
ORF1ab/nsp4380A380TGcTAcA260.111111
ORF1ab/nsp4380A380VgCtgTt66AD.20.001314
ORF1ab/nsp4380A380TGctAct66AY.1030.000037
ORF1ab/nsp4380A380VgCtgTt66AY.1200.000223
ORF1ab/nsp4380A380AgcTgcC66AY.430.000027
ORF1ab/nsp4380A380VgCtgTt66AY.9.20.00022
ORF1ab/nsp4380A380VgCtgTt66B.1.1.3170.00247
ORF1ab/nsp4380A380VgCtgTt66B.1.1.500.004073
ORF1ab/nsp4380A380VgCtgTt66B.1.1470.004535
ORF1ab/nsp4380A380VgCtgTt66B.1.2340.000792
ORF1ab/nsp4380A380GgCtgGt350.166667
ORF1ab/nsp4380A380SGctTct350.166667
ORF1ab/nsp4380A380SGCtAGt250.111111
ORF1ab/nsp4380A380GgCTgGA250.111111
ORF1ab/nsp4380A380VgCtgTt55A.2.40.016835
ORF1ab/nsp4380A380del1Gct-ct35All0.000001
ORF1ab/nsp4380A380GgCtgGt35All0.000001
ORF1ab/nsp4380A380GgCTgGA25All0
ORF1ab/nsp4380A380del1gCtg-t15All0
ORF1ab/nsp4380A380del1GCtA-t15All0
ORF1ab/nsp4380A380VgCtgTt55AY.120.00158
ORF1ab/nsp4380A380AgcTgcC35AY.40.000005
ORF1ab/nsp4380A380AgcTgcG25AY.40.000003
ORF1ab/nsp4380A380IGCtATt55B.10.000046
ORF1ab/nsp4380A380AgcTgcC45B.10.000037
ORF1ab/nsp4380A380AgcTgcG15B.10.000009
ORF1ab/nsp4380A380TGctAct55B.1.10.000091
ORF1ab/nsp4380A380VgCtgTt55B.1.1.2840.000537
ORF1ab/nsp4380A380VgCtgTt55B.1.1.3180.001509
ORF1ab/nsp4380A380VgCtgTt55B.1.1.3320.15625
ORF1ab/nsp4380A380VgCtgTt55B.1.1.3480.003981
ORF1ab/nsp4380A380VgCtgTt55B.1.1.370.000964
ORF1ab/nsp4380A380AgcTgcC55B.1.1770.000066
ORF1ab/nsp4380A380VgCtgTt55B.1.177.570.001405
ORF1ab/nsp4380A380TGctAct55B.1.177.860.000917
ORF1ab/nsp4380A380VgCtgTt55B.1.351.20.001513
ORF1ab/nsp4380A380VgCtgTt55B.1.466.20.001956
ORF1ab/nsp4380A380VgCtgTt55B.1.5240.007032
ORF1ab/nsp4380A380VgCtgTt55B.1.5610.001985
ORF1ab/nsp4380A380VgCtgTt55B.1.6370.000365
ORF1ab/nsp4380A380VgCtgTt55C.36.10.020747
ORF1ab/nsp4380A380VgCtgTt55P.1.150.001162
ORF1ab/nsp4380A380CGCtTGt44All0.000001
ORF1ab/nsp4380A380VgCtgTt44AY.1010.001962
ORF1ab/nsp4380A380AgcTgcC34AY.1030.000019
ORF1ab/nsp4380A380AgcTgcA14AY.1030.000006
ORF1ab/nsp4380A380VgCtgTt44AY.20.001425
ORF1ab/nsp4380A380VgCtgTt44AY.320.00213
ORF1ab/nsp4380A380delGCT---44AY.430.000018
ORF1ab/nsp4380A380VgCtgTt44AY.610.000419
ORF1ab/nsp4380A380VgCtgTt44AY.620.001743
ORF1ab/nsp4380A380VgCtgTt44AY.700.000834
ORF1ab/nsp4380A380VgCtgTt44AY.980.000316
ORF1ab/nsp4380A380VgCtgTt44B.1.1.2070.004728
ORF1ab/nsp4380A380VgCtgTt44B.1.1.330.001684
ORF1ab/nsp4380A380VgCtgTt44B.1.1.5230.00625
ORF1ab/nsp4380A380TGctAct44B.1.2210.000284
ORF1ab/nsp4380A380VgCtgTt44B.1.2360.008214
ORF1ab/nsp4380A380VgCtgTt44B.1.4660.093023
ORF1ab/nsp4380A380VgCtgTt44B.1.4700.005618
ORF1ab/nsp4380A380VgCtgTt44B.1.6210.000354
ORF1ab/nsp4380A380VgCtgTt44P.20.000747
ORF1ab/nsp4380A380VgCtgTt33A.20.001985
ORF1ab/nsp4380A380RGCTAGA33All0.000001
ORF1ab/nsp4380A380del2GCt--t23All0
ORF1ab/nsp4380A380del2GCT--C13All0
ORF1ab/nsp4380A380TGctAct33AY.1020.00008
ORF1ab/nsp4380A380VgCtgTt33AY.1050.001929
ORF1ab/nsp4380A380VgCtgTt33AY.1170.000254
ORF1ab/nsp4380A380VgCtgTt33AY.120.10.000963
ORF1ab/nsp4380A380VgCtgTt33AY.46.40.000494
ORF1ab/nsp4380A380VgCtgTt33AY.590.001589
ORF1ab/nsp4380A380VgCtgTt33AY.730.001996
ORF1ab/nsp4380A380SGctTct33B.10.000027
ORF1ab/nsp4380A380VgCtgTt33B.1.1.1760.001318
ORF1ab/nsp4380A380VgCtgTt33B.1.1.2200.005576
ORF1ab/nsp4380A380VgCtgTt33B.1.1.2220.000612
ORF1ab/nsp4380A380VgCtgTt33B.1.1.250.001706
ORF1ab/nsp4380A380VgCtgTt33B.1.1.3110.001074
ORF1ab/nsp4380A380VgCtgTt33B.1.1.3540.013158
ORF1ab/nsp4380A380VgCtgTt33B.1.1.390.001529
ORF1ab/nsp4380A380DgCtgAt33B.1.1.70.000003
ORF1ab/nsp4380A380TGctAct33B.1.1770.00004
ORF1ab/nsp4380A380VgCtgTt33B.1.177.40.000633
ORF1ab/nsp4380A380VgCtgTt33B.1.177.530.007177
ORF1ab/nsp4380A380VgCtgTt33B.1.177.620.003576
ORF1ab/nsp4380A380VgCtgTt33B.1.177.730.001699
ORF1ab/nsp4380A380VgCtgTt33B.1.1890.012876
ORF1ab/nsp4380A380VgCtgTt33B.1.2370.014925
ORF1ab/nsp4380A380AgcTgcC33B.1.36.80.003
ORF1ab/nsp4380A380VgCtgTt33B.1.3960.002117
ORF1ab/nsp4380A380VgCtgTt33B.1.4560.009804
ORF1ab/nsp4380A380VgCtgTt33B.1.4990.003151
ORF1ab/nsp4380A380VgCtgTt33B.1.5820.001472
ORF1ab/nsp4380A380AgcTgcC33B.1.5960.000261
ORF1ab/nsp4380A380DgCtgAt33B.1.5960.000261
ORF1ab/nsp4380A380VgCtgTt33B.1.6090.001438
ORF1ab/nsp4380A380VgCtgTt33B.1.617.30.008955
ORF1ab/nsp4380A380SGctTct33P.30.004785
ORF1ab/nsp4380A380RGCTAGA220.111111
ORF1ab/nsp4380A380AgcTgcA220.111111
ORF1ab/nsp4380A380PGctCct220.111111
ORF1ab/nsp4380A380VgCtgTt22A.2.50.000998
ORF1ab/nsp4380A380VgCtgTt22AY.10.000791
ORF1ab/nsp4380A380VgCtgTt22AY.16.10.00094
ORF1ab/nsp4380A380AgcTgcC22AY.30.00002
ORF1ab/nsp4380A380VgCtgTt22AY.34.10.00102
ORF1ab/nsp4380A380VgCtgTt22AY.4.50.000215
ORF1ab/nsp4380A380VgCtgTt22AY.400.001929
ORF1ab/nsp4380A380VgCtgTt22AY.450.000243
ORF1ab/nsp4380A380VgCtgTt22AY.510.001818
ORF1ab/nsp4380A380VgCtgTt22AY.680.000547
ORF1ab/nsp4380A380TGctAct22AY.7.10.000225
ORF1ab/nsp4380A380VgCtgTt22AY.740.000231
ORF1ab/nsp4380A380VgCtgTt22AY.910.001461
ORF1ab/nsp4380A380TGctAct22AY.98.10.000097
ORF1ab/nsp4380A380VgCtgTt22AY.99.20.000184
ORF1ab/nsp4380A380VgCtgTt22AZ.20.001642
ORF1ab/nsp4380A380TGctAct22B0.000256
ORF1ab/nsp4380A380del1Gct-ct22B.10.000018
ORF1ab/nsp4380A380VgCtgTt22B.1.1.1170.019417
ORF1ab/nsp4380A380VgCtgTt22B.1.1.1350.00939
ORF1ab/nsp4380A380TGctAct22B.1.1.2310.006192
ORF1ab/nsp4380A380VgCtgTt22B.1.1.2430.008163
ORF1ab/nsp4380A380VgCtgTt22B.1.1.2650.006309
ORF1ab/nsp4380A380VgCtgTt22B.1.1.290.020619
ORF1ab/nsp4380A380VgCtgTt22B.1.1.2980.001724
ORF1ab/nsp4380A380VgCtgTt22B.1.1.3220.017544
ORF1ab/nsp4380A380VgCtgTt22B.1.1.3490.020619
ORF1ab/nsp4380A380VgCtgTt22B.1.1.4090.005666
ORF1ab/nsp4380A380VgCtgTt22B.1.1.4240.090909
ORF1ab/nsp4380A380VgCtgTt22B.1.1.5260.007092
ORF1ab/nsp4380A380VgCtgTt22B.1.130.004751
ORF1ab/nsp4380A380delGCT---22B.1.177.690.002967
ORF1ab/nsp4380A380VgCtgTt22B.1.177.770.001452
ORF1ab/nsp4380A380VgCtgTt22B.1.1780.047619
ORF1ab/nsp4380A380delGCT---22B.1.20.000018
ORF1ab/nsp4380A380VgCtgTt22B.1.2100.004264
ORF1ab/nsp4380A380IGCtATt22B.1.2210.000142
ORF1ab/nsp4380A380VgCtgTt22B.1.2650.002541
ORF1ab/nsp4380A380VgCtgTt22B.1.3110.000549
ORF1ab/nsp4380A380VgCtgTt22B.1.3360.004878
ORF1ab/nsp4380A380VgCtgTt22B.1.3560.003454
ORF1ab/nsp4380A380VgCtgTt22B.1.36.380.003284
ORF1ab/nsp4380A380VgCtgTt22B.1.3690.00057
ORF1ab/nsp4380A380VgCtgTt22B.1.3990.003868
ORF1ab/nsp4380A380VgCtgTt22B.1.4090.001563
ORF1ab/nsp4380A380VgCtgTt22B.1.4230.020408
ORF1ab/nsp4380A380VgCtgTt22B.1.4680.011429
ORF1ab/nsp4380A380VgCtgTt22B.1.4820.166667
ORF1ab/nsp4380A380TGctAct22B.1.5260.000047
ORF1ab/nsp4380A380VgCtgTt22B.1.5300.014286
ORF1ab/nsp4380A380VgCtgTt22B.1.5510.002581
ORF1ab/nsp4380A380VgCtgTt22B.1.5640.000852
ORF1ab/nsp4380A380VgCtgTt22B.1.5900.009091
ORF1ab/nsp4380A380AgcTgcC22B.1.6120.005305
ORF1ab/nsp4380A380delGCT---22B.1.617.20.000008
ORF1ab/nsp4380A380VgCtgTt22B.1.6190.001742
ORF1ab/nsp4380A380VgCtgTt22B.1.621.10.001012
ORF1ab/nsp4380A380VgCtgTt22C.36.3.10.005435
ORF1ab/nsp4380A380VgCtgTt22C.390.037736
ORF1ab/nsp4380A380VgCtgTt22D.20.00015
ORF1ab/nsp4380A380VgCtgTt22D.50.00995
ORF1ab/nsp4380A380VgCtgTt22N.50.003534
ORF1ab/nsp4380A380SGctTct22P.10.000032
ORF1ab/nsp4380A380VgCtgTt22P.1.10.000635
ORF1ab/nsp4380A380VgCtgTt22P.1.100.000539
ORF1ab/nsp4380A380VgCtgTt22R.10.00018
ORF1ab/nsp4380A380CGCtTGt110.055556
ORF1ab/nsp4380A380DgCtgAt11A0.000387
ORF1ab/nsp4380A380AgcTgcG11A0.000387
ORF1ab/nsp4380A380EgCTgAG11A0.000387
ORF1ab/nsp4380A380VgCtgTt11A.10.000282
ORF1ab/nsp4380A380VgCtgTt11A.2.5.10.004808
ORF1ab/nsp4380A380VgCtgTt11A.210.00277
ORF1ab/nsp4380A380VgCtgTt11A.23.10.000704
ORF1ab/nsp4380A380VgCtgTt11AE.20.058824
ORF1ab/nsp4380A380EgCTgAG11All0
ORF1ab/nsp4380A380FGCtTTt11All0
ORF1ab/nsp4380A380YGCtTAt11All0
ORF1ab/nsp4380A380VgCtgTt11AP.10.001502
ORF1ab/nsp4380A380DgCtgAt11AY.1000.000046
ORF1ab/nsp4380A380VgCtgTt11AY.1040.001984
ORF1ab/nsp4380A380delGCT---11AY.1060.000335
ORF1ab/nsp4380A380VgCtgTt11AY.1070.000466
ORF1ab/nsp4380A380VgCtgTt11AY.1100.000113
ORF1ab/nsp4380A380VgCtgTt11AY.1110.000183
ORF1ab/nsp4380A380VgCtgTt11AY.116.10.000311
ORF1ab/nsp4380A380CGCtTGt11AY.1190.000035
ORF1ab/nsp4380A380VgCtgTt11AY.120.2.10.000498
ORF1ab/nsp4380A380TGctAct11AY.130.000161
ORF1ab/nsp4380A380VgCtgTt11AY.160.00038
ORF1ab/nsp4380A380delGCT---11AY.190.00114
ORF1ab/nsp4380A380CGCtTGt11AY.200.000039
ORF1ab/nsp4380A380VgCtgTt11AY.240.000431
ORF1ab/nsp4380A380VgCtgTt11AY.270.000065
ORF1ab/nsp4380A380AgcTgcC11AY.290.000016
ORF1ab/nsp4380A380TGctAct11AY.30.00001
ORF1ab/nsp4380A380VgCtgTt11AY.300.000396
ORF1ab/nsp4380A380VgCtgTt11AY.370.000316
ORF1ab/nsp4380A380DgCtgAt11AY.370.000316
ORF1ab/nsp4380A380VgCtgTt11AY.39.20.001541
ORF1ab/nsp4380A380DgCtgAt11AY.40.000002
ORF1ab/nsp4380A380VgCtgTt11AY.4.10.000737
ORF1ab/nsp4380A380AgcTgcC11AY.4.20.000022
ORF1ab/nsp4380A380VgCtgTt11AY.410.000294
ORF1ab/nsp4380A380TGctAct11AY.440.000006
ORF1ab/nsp4380A380SGctTct11AY.440.000006
ORF1ab/nsp4380A380delGCT---11AY.46.20.000635
ORF1ab/nsp4380A380VgCtgTt11AY.5.30.000337
ORF1ab/nsp4380A380VgCtgTt11AY.530.000288
ORF1ab/nsp4380A380VgCtgTt11AY.540.000095
ORF1ab/nsp4380A380AgcTgcG11AY.540.000095
ORF1ab/nsp4380A380VgCtgTt11AY.550.000917
ORF1ab/nsp4380A380delGCT---11AY.60.000041
ORF1ab/nsp4380A380VgCtgTt11AY.630.000387
ORF1ab/nsp4380A380del2GCT--C11AY.670.000464
ORF1ab/nsp4380A380delGCT---11AY.680.000274
ORF1ab/nsp4380A380VgCtgTt11AY.70.000196
ORF1ab/nsp4380A380VgCtgTt11AY.7.20.000559
ORF1ab/nsp4380A380VgCtgTt11AY.75.10.00018
ORF1ab/nsp4380A380delGCT---11AY.75.10.00018
ORF1ab/nsp4380A380VgCtgTt11AY.770.001127
ORF1ab/nsp4380A380VgCtgTt11AY.790.001211
ORF1ab/nsp4380A380VgCtgTt11AY.820.001357
ORF1ab/nsp4380A380VgCtgTt11AY.830.001724
ORF1ab/nsp4380A380VgCtgTt11AY.850.000427
ORF1ab/nsp4380A380VgCtgTt11AY.860.00083
ORF1ab/nsp4380A380VgCtgTt11AY.870.000833
ORF1ab/nsp4380A380VgCtgTt11AY.890.004902
ORF1ab/nsp4380A380delGCT---11AY.90.000068
ORF1ab/nsp4380A380delGCT---11AY.9.20.000037
ORF1ab/nsp4380A380TGctAct11AY.940.000443
ORF1ab/nsp4380A380VgCtgTt11AY.960.002075
ORF1ab/nsp4380A380delGCT---11AY.990.001049
ORF1ab/nsp4380A380delGCT---11AY.99.10.001553
ORF1ab/nsp4380A380VgCtgTt11AZ.30.00152
ORF1ab/nsp4380A380DgCtgAt11B.10.000009
ORF1ab/nsp4380A380delGCT---11B.1.10.000018
ORF1ab/nsp4380A380del1gCtg-t11B.1.10.000018
ORF1ab/nsp4380A380DgCtgAt11B.1.10.000018
ORF1ab/nsp4380A380PGctCct11B.1.10.000018
ORF1ab/nsp4380A380VgCtgTt11B.1.1.100.001115
ORF1ab/nsp4380A380delGCT---11B.1.1.1390.022727
ORF1ab/nsp4380A380VgCtgTt11B.1.1.1610.003534
ORF1ab/nsp4380A380SGctTct11B.1.1.1700.001247
ORF1ab/nsp4380A380VgCtgTt11B.1.1.1700.001247
ORF1ab/nsp4380A380FGCtTTt11B.1.1.1700.001247
ORF1ab/nsp4380A380VgCtgTt11B.1.1.1870.00885
ORF1ab/nsp4380A380VgCtgTt11B.1.1.1940.00495
ORF1ab/nsp4380A380VgCtgTt11B.1.1.2050.003717
ORF1ab/nsp4380A380VgCtgTt11B.1.1.2160.00089
ORF1ab/nsp4380A380AgcTgcG11B.1.1.2160.00089
ORF1ab/nsp4380A380VgCtgTt11B.1.1.2290.005747
ORF1ab/nsp4380A380delGCT---11B.1.1.2360.006897
ORF1ab/nsp4380A380VgCtgTt11B.1.1.2540.011236
ORF1ab/nsp4380A380VgCtgTt11B.1.1.2790.001121
ORF1ab/nsp4380A380VgCtgTt11B.1.1.2880.001916
ORF1ab/nsp4380A380VgCtgTt11B.1.1.2940.001266
ORF1ab/nsp4380A380VgCtgTt11B.1.1.3070.002532
ORF1ab/nsp4380A380VgCtgTt11B.1.1.3160.000925
ORF1ab/nsp4380A380VgCtgTt11B.1.1.3260.001761
ORF1ab/nsp4380A380AgcTgcC11B.1.1.3260.001761
ORF1ab/nsp4380A380SGctTct11B.1.1.3560.008547
ORF1ab/nsp4380A380VgCtgTt11B.1.1.3690.000446
ORF1ab/nsp4380A380VgCtgTt11B.1.1.3710.010417
ORF1ab/nsp4380A380YGCtTAt11B.1.1.3720.000689
ORF1ab/nsp4380A380TGctAct11B.1.1.390.00051
ORF1ab/nsp4380A380VgCtgTt11B.1.1.3930.111111
ORF1ab/nsp4380A380VgCtgTt11B.1.1.4190.007407
ORF1ab/nsp4380A380TGctAct11B.1.1.470.005348
ORF1ab/nsp4380A380PGctCct11B.1.1.5190.00004
ORF1ab/nsp4380A380VgCtgTt11B.1.1.540.003021
ORF1ab/nsp4380A380CGCtTGt11B.1.1.70.000001
ORF1ab/nsp4380A380del2GCt--t11B.1.1.70.000001
ORF1ab/nsp4380A380VgCtgTt11B.1.1.700.000341
ORF1ab/nsp4380A380delGCT---11B.1.1.700.000341
ORF1ab/nsp4380A380VgCtgTt11B.1.1.80.003584
ORF1ab/nsp4380A380VgCtgTt11B.1.1.890.006061
ORF1ab/nsp4380A380VgCtgTt11B.1.1280.000635
ORF1ab/nsp4380A380IGCtATt11B.1.1600.000031
ORF1ab/nsp4380A380TGctAct11B.1.160.160.000929
ORF1ab/nsp4380A380VgCtgTt11B.1.160.310.008065
ORF1ab/nsp4380A380AgcTgcA11B.1.160.70.002079
ORF1ab/nsp4380A380VgCtgTt11B.1.1700.00431
ORF1ab/nsp4380A380DgCtgAt11B.1.1770.000013
ORF1ab/nsp4380A380IGCtATt11B.1.1770.000013
ORF1ab/nsp4380A380PGctCct11B.1.1770.000013
ORF1ab/nsp4380A380VgCtgTt11B.1.177.100.000878
ORF1ab/nsp4380A380delGCT---11B.1.177.110.001698
ORF1ab/nsp4380A380delGCT---11B.1.177.170.000821
ORF1ab/nsp4380A380VgCtgTt11B.1.177.330.001645
ORF1ab/nsp4380A380delGCT---11B.1.177.40.000211
ORF1ab/nsp4380A380TGctAct11B.1.177.440.000519
ORF1ab/nsp4380A380IGCtATt11B.1.177.440.000519
ORF1ab/nsp4380A380VgCtgTt11B.1.177.440.000519
ORF1ab/nsp4380A380VgCtgTt11B.1.177.50.001242
ORF1ab/nsp4380A380delGCT---11B.1.177.550.002331
ORF1ab/nsp4380A380delGCT---11B.1.177.560.000668
ORF1ab/nsp4380A380delGCT---11B.1.177.580.001332
ORF1ab/nsp4380A380delGCT---11B.1.177.600.000218
ORF1ab/nsp4380A380VgCtgTt11B.1.177.600.000218
ORF1ab/nsp4380A380VgCtgTt11B.1.177.70.000165
ORF1ab/nsp4380A380delGCT---11B.1.177.760.002494
ORF1ab/nsp4380A380VgCtgTt11B.1.177.80.000752
ORF1ab/nsp4380A380VgCtgTt11B.1.177.800.001912
ORF1ab/nsp4380A380TGctAct11B.1.177.810.000189
ORF1ab/nsp4380A380AgcTgcC11B.1.177.870.000728
ORF1ab/nsp4380A380VgCtgTt11B.1.1820.007246
ORF1ab/nsp4380A380VgCtgTt11B.1.1900.01
ORF1ab/nsp4380A380TGctAct11B.1.20.000009
ORF1ab/nsp4380A380del1Gct-ct11B.1.20.000009
ORF1ab/nsp4380A380SGctTct11B.1.20.000009
ORF1ab/nsp4380A380VgCtgTt11B.1.2060.000816
ORF1ab/nsp4380A380VgCtgTt11B.1.214.20.0006
ORF1ab/nsp4380A380TGctAct11B.1.214.20.0006
ORF1ab/nsp4380A380VgCtgTt11B.1.214.30.007143
ORF1ab/nsp4380A380VgCtgTt11B.1.2180.005155
ORF1ab/nsp4380A380VgCtgTt11B.1.2230.002778
ORF1ab/nsp4380A380del2GCt--t11B.1.2430.00007
ORF1ab/nsp4380A380VgCtgTt11B.1.2470.014925
ORF1ab/nsp4380A380TGctAct11B.1.2580.000067
ORF1ab/nsp4380A380VgCtgTt11B.1.258.120.007874
ORF1ab/nsp4380A380VgCtgTt11B.1.3300.028571
ORF1ab/nsp4380A380TGctAct11B.1.3510.00003
ORF1ab/nsp4380A380AgcTgcG11B.1.360.000146
ORF1ab/nsp4380A380TGctAct11B.1.360.000146
ORF1ab/nsp4380A380VgCtgTt11B.1.36.100.004785
ORF1ab/nsp4380A380VgCtgTt11B.1.36.160.001425
ORF1ab/nsp4380A380VgCtgTt11B.1.36.220.001208
ORF1ab/nsp4380A380TGctAct11B.1.36.350.002604
ORF1ab/nsp4380A380VgCtgTt11B.1.36.360.000602
ORF1ab/nsp4380A380delGCT---11B.1.36.380.001642
ORF1ab/nsp4380A380VgCtgTt11B.1.3620.001541
ORF1ab/nsp4380A380VgCtgTt11B.1.3660.004878
ORF1ab/nsp4380A380VgCtgTt11B.1.3780.006849
ORF1ab/nsp4380A380TGctAct11B.1.3780.006849
ORF1ab/nsp4380A380VgCtgTt11B.1.4040.001302
ORF1ab/nsp4380A380VgCtgTt11B.1.4110.003704
ORF1ab/nsp4380A380VgCtgTt11B.1.4500.011364
ORF1ab/nsp4380A380VgCtgTt11B.1.466.10.007194
ORF1ab/nsp4380A380AgcTgcC11B.1.4700.001404
ORF1ab/nsp4380A380VgCtgTt11B.1.4710.002732
ORF1ab/nsp4380A380VgCtgTt11B.1.4730.019231
ORF1ab/nsp4380A380TGctAct11B.1.4730.019231
ORF1ab/nsp4380A380IGCtATt11B.1.4730.019231
ORF1ab/nsp4380A380TGctAct11B.1.4970.000315
ORF1ab/nsp4380A380SGctTct11B.1.5090.000866
ORF1ab/nsp4380A380VgCtgTt11B.1.5410.004425
ORF1ab/nsp4380A380VgCtgTt11B.1.5440.006024
ORF1ab/nsp4380A380SGctTct11B.1.5580.004566
ORF1ab/nsp4380A380VgCtgTt11B.1.5600.00463
ORF1ab/nsp4380A380VgCtgTt11B.1.5650.00081
ORF1ab/nsp4380A380TGctAct11B.1.5750.000303
ORF1ab/nsp4380A380VgCtgTt11B.1.5760.000907
ORF1ab/nsp4380A380SGctTct11B.1.5950.000261
ORF1ab/nsp4380A380PGctCct11B.1.5960.000087
ORF1ab/nsp4380A380RGCTAGA11B.1.617.10.000129
ORF1ab/nsp4380A380SGctTct11B.1.617.20.000004
ORF1ab/nsp4380A380TGctAct11B.1.617.20.000004
ORF1ab/nsp4380A380del1GCtA-t11B.1.617.20.000004
ORF1ab/nsp4380A380DgCtgAt11B.1.617.20.000004
ORF1ab/nsp4380A380VgCtgTt11B.1.619.10.000641
ORF1ab/nsp4380A380VgCtgTt11B.1.6230.000536
ORF1ab/nsp4380A380AgcTgcC11B.1.6270.00202
ORF1ab/nsp4380A380VgCtgTt11B.1.88.10.004808
ORF1ab/nsp4380A380VgCtgTt11B.30.000831
ORF1ab/nsp4380A380VgCtgTt11B.3.10.001658
ORF1ab/nsp4380A380VgCtgTt11B.40.002208
ORF1ab/nsp4380A380VgCtgTt11B.4.10.018868
ORF1ab/nsp4380A380VgCtgTt11B.400.000364
ORF1ab/nsp4380A380VgCtgTt11B.6.40.045455
ORF1ab/nsp4380A380VgCtgTt11C.10.002392
ORF1ab/nsp4380A380VgCtgTt11C.1.20.004255
ORF1ab/nsp4380A380VgCtgTt11C.290.0625
ORF1ab/nsp4380A380VgCtgTt11C.300.001727
ORF1ab/nsp4380A380VgCTgTC11C.350.000774
ORF1ab/nsp4380A380VgCtgTt11C.37.10.002618
ORF1ab/nsp4380A380VgCtgTt11C.40.01
ORF1ab/nsp4380A380TGctAct11D.20.000075
ORF1ab/nsp4380A380PGctCct11D.20.000075
ORF1ab/nsp4380A380SGctTct11D.20.000075
ORF1ab/nsp4380A380VgCtgTt11L.10.001905
ORF1ab/nsp4380A380VgCtgTt11N.60.007092
ORF1ab/nsp4380A380VgCtgTt11N.90.005952
ORF1ab/nsp4380A380VgCtgTt11P.1.160.000374
ORF1ab/nsp4380A380VgCtgTt11P.1.170.000162
ORF1ab/nsp4380A380VgCtgTt11P.1.17.10.000875
ORF1ab/nsp4380A380VgCtgTt11P.1.80.004785
ORF1ab/nsp4380A380delGCT---11Q.10.000126
ORF1ab/nsp4380A380VgCtgTt11Q.40.000455
ORF1ab/nsp4380A380delGCT---11U.30.003861