CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 375

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4375F375SF3138SnonsyntTctCc16895168900.9997049677-9679
ORF1ab/nsp4375F375SF3138SnonsyntTCtCT1689540.0002367569677-9679
ORF1ab/nsp4375F375SF3138SnonsyntTCtCA1689510.00005918919677-9679
ORF1ab/nsp4375F375FF3138FsynttCttT1943194319677-9679
ORF1ab/nsp4375F375delF3138deldelTTC---12612619677-9679
ORF1ab/nsp4375F375LF3138LnonsynttCttA89490.5505629677-9679
ORF1ab/nsp4375F375LF3138LnonsynTtcCtc89300.3370799677-9679
ORF1ab/nsp4375F375LF3138LnonsynttCttG8990.1011249677-9679
ORF1ab/nsp4375F375LF3138LnonsynTtCCtT8910.0112369677-9679
ORF1ab/nsp4375F375CF3138CnonsyntTctGc78770.9871799677-9679
ORF1ab/nsp4375F375CF3138CnonsyntTCtGT7810.01282059677-9679
ORF1ab/nsp4375F375YF3138YnonsyntTctAc8819677-9679
ORF1ab/nsp4375F375del1F3138del1delttCtt-530.69677-9679
ORF1ab/nsp4375F375VF3138VnonsynTtcGtc530.69677-9679
ORF1ab/nsp4375F375del1F3138del1delTtc-tc520.49677-9679
ORF1ab/nsp4375F375VF3138VnonsynTtCGtA510.29677-9679
ORF1ab/nsp4375F375VF3138VnonsynTtCGtG510.29677-9679
ORF1ab/nsp4375F375RF3138RnonsynTTCAGG420.59677-9679
ORF1ab/nsp4375F375RF3138RnonsynTTCCGT410.259677-9679
ORF1ab/nsp4375F375RF3138RnonsynTTcCGc410.259677-9679
ORF1ab/nsp4375F375del2F3138del2deltTCt--2219677-9679
ORF1ab/nsp4375F375HF3138HnonsynTTcCAc2219677-9679
ORF1ab/nsp4375F375MF3138MnonsynTtCAtG2219677-9679
ORF1ab/nsp4375F375NF3138NnonsynTTcAAc2219677-9679
ORF1ab/nsp4375F375IF3138InonsynTtcAtc2219677-9679
ORF1ab/nsp4375F375AF3138AnonsynTTcGCc1119677-9679

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4375F375StTctCc1689016895All0.00323
ORF1ab/nsp4375F375StTCtCT416895All0.000001
ORF1ab/nsp4375F375StTCtCA116895All0
ORF1ab/nsp4375F375StTctCc89328932B.1.617.20.033633
ORF1ab/nsp4375F375StTctCc41444144AY.350.965742
ORF1ab/nsp4375F375FttCttT19431943All0.000372
ORF1ab/nsp4375F375StTctCc17501750AY.480.813953
ORF1ab/nsp4375F375StTctCc610610AY.16.10.286654
ORF1ab/nsp4375F375FttCttT395395B.1.1.70.000354
ORF1ab/nsp4375F375FttCttT381381AY.800.430023
ORF1ab/nsp4375F375FttCttT265265B.1.36.10.302166
ORF1ab/nsp4375F375StTctCc207208AY.440.00126
ORF1ab/nsp4375F375StTCtCT1208AY.440.000006
ORF1ab/nsp4375F375StTctCc177177AY.130.028493
ORF1ab/nsp4375F375delTTC---126126All0.000024
ORF1ab/nsp4375F375StTctCc121121AY.1080.133407
ORF1ab/nsp4375F375StTctCc103103AY.230.007184
ORF1ab/nsp4375F375LttCttA4989All0.000009
ORF1ab/nsp4375F375LTtcCtc3089All0.000006
ORF1ab/nsp4375F375LttCttG989All0.000002
ORF1ab/nsp4375F375LTtCCtT189All0
ORF1ab/nsp4375F375FttCttT8282AY.260.002321
ORF1ab/nsp4375F375StTctCc8080B.10.000733
ORF1ab/nsp4375F375CtTctGc7778All0.000015
ORF1ab/nsp4375F375CtTCtGT178All0
ORF1ab/nsp4375F375FttCttT6464AY.40.0001
ORF1ab/nsp4375F375StTctCc6060AY.590.03178
ORF1ab/nsp4375F375FttCttT5959B.1.617.20.000222
ORF1ab/nsp4375F375StTctCc5858AY.920.016662
ORF1ab/nsp4375F375delTTC---5858B.1.1.70.000052
ORF1ab/nsp4375F375StTctCc5555AY.680.015056
ORF1ab/nsp4375F375FttCttT5252B.1.1770.000685
ORF1ab/nsp4375F375FttCttT5151AY.430.000226
ORF1ab/nsp4375F375FttCttT5050AY.440.000304
ORF1ab/nsp4375F375StTctCc4545AY.980.003555
ORF1ab/nsp4375F375StTctCc4444AY.540.004195
ORF1ab/nsp4375F375FttCttT4343B.1.20.000379
ORF1ab/nsp4375F375StTctCc4040AY.660.042781
ORF1ab/nsp4375F375FttCttT4040B.1.177.180.046404
ORF1ab/nsp4375F375FttCttT3838B.1.3510.00113
ORF1ab/nsp4375F375FttCttT3636B.1.360.005252
ORF1ab/nsp4375F375StTctCc3535AY.190.039909
ORF1ab/nsp4375F375StTctCc3232AY.520.026059
ORF1ab/nsp4375F375FttCttT3131AY.390.000766
ORF1ab/nsp4375F375StTctCc2727AY.370.008534
ORF1ab/nsp4375F375StTctCc2526B.1.1.70.000022
ORF1ab/nsp4375F375StTCtCA126B.1.1.70.000001
ORF1ab/nsp4375F375StTctCc2626B.1.20.000229
ORF1ab/nsp4375F375FttCttT2525P.10.000394
ORF1ab/nsp4375F375FttCttT2222B.10.000202
ORF1ab/nsp4375F375StTctCc2121AY.430.000093
ORF1ab/nsp4375F375StTctCc2121AY.5.40.005811
ORF1ab/nsp4375F375StTctCc1818AY.1160.005162
ORF1ab/nsp4375F375FttCttT1717B.1.2980.035941
ORF1ab/nsp4375F375StTctCc1516AY.1030.000093
ORF1ab/nsp4375F375StTCtCT116AY.1030.000006
ORF1ab/nsp4375F375CtTctGc1515AY.250.00009
ORF1ab/nsp4375F375FttCttT1414AY.1180.000877
ORF1ab/nsp4375F375FttCttT1414B.1.10.000254
ORF1ab/nsp4375F375LTtcCtc914B.1.1.70.000008
ORF1ab/nsp4375F375LttCttA314B.1.1.70.000003
ORF1ab/nsp4375F375LttCttG214B.1.1.70.000002
ORF1ab/nsp4375F375CtTctGc1414B.1.160.150.069307
ORF1ab/nsp4375F375FttCttT1414B.1.5960.00122
ORF1ab/nsp4375F375StTctCc1313AY.40.00002
ORF1ab/nsp4375F375LttCttA1313B.1.6210.001151
ORF1ab/nsp4375F375FttCttT1313B.1.6370.00095
ORF1ab/nsp4375F375CtTctGc1212AY.40.000019
ORF1ab/nsp4375F375delTTC---1212B.1.1770.000158
ORF1ab/nsp4375F375StTctCc1111AY.470.000342
ORF1ab/nsp4375F375StTctCc1010B.1.10.000181
ORF1ab/nsp4375F375StTctCc99AY.1210.001218
ORF1ab/nsp4375F375FttCttT99AY.250.000054
ORF1ab/nsp4375F375StTctCc99AY.550.008257
ORF1ab/nsp4375F375FttCttT99B.1.1.5190.000357
ORF1ab/nsp4375F375CtTctGc99B.1.36.180.003782
ORF1ab/nsp4375F375YtTctAc88All0.000002
ORF1ab/nsp4375F375FttCttT88AY.1020.000212
ORF1ab/nsp4375F375StTctCc88AY.240.003448
ORF1ab/nsp4375F375delTTC---88AY.40.000012
ORF1ab/nsp4375F375delTTC---88AY.4.50.00086
ORF1ab/nsp4375F375StTctCc88AY.750.000448
ORF1ab/nsp4375F375StTctCc88AY.770.009019
ORF1ab/nsp4375F375FttCttT88B.1.5260.000188
ORF1ab/nsp4375F375StTctCc88B.1.617.10.001032
ORF1ab/nsp4375F375FttCttT77AY.1030.000043
ORF1ab/nsp4375F375FttCttT77AY.30.00007
ORF1ab/nsp4375F375StTctCc77AY.610.000733
ORF1ab/nsp4375F375StTctCc77AY.870.005828
ORF1ab/nsp4375F375FttCttT77AY.9.20.000257
ORF1ab/nsp4375F375CtTctGc77B.1.1.70.000006
ORF1ab/nsp4375F375StTctCc77B.1.177.510.031963
ORF1ab/nsp4375F375FttCttT77B.1.4700.009831
ORF1ab/nsp4375F375LttCttA66AY.250.000036
ORF1ab/nsp4375F375FttCttT66AY.330.000401
ORF1ab/nsp4375F375StTctCc66AY.640.003571
ORF1ab/nsp4375F375StTctCc66AY.98.10.000291
ORF1ab/nsp4375F375StTctCc66B0.000767
ORF1ab/nsp4375F375FttCttT66B.1.36.80.006
ORF1ab/nsp4375F375LttCttA56B.1.617.20.000019
ORF1ab/nsp4375F375LttCttG16B.1.617.20.000004
ORF1ab/nsp4375F375FttCttT66B.1.6230.003219
ORF1ab/nsp4375F375del1ttCtt-35All0.000001
ORF1ab/nsp4375F375VTtcGtc35All0.000001
ORF1ab/nsp4375F375del1Ttc-tc25All0
ORF1ab/nsp4375F375VTtCGtA15All0
ORF1ab/nsp4375F375VTtCGtG15All0
ORF1ab/nsp4375F375StTctCc55AY.1000.00023
ORF1ab/nsp4375F375StTctCc55AY.1180.000313
ORF1ab/nsp4375F375StTctCc55AY.30.00005
ORF1ab/nsp4375F375FttCttT55AY.4.20.000108
ORF1ab/nsp4375F375LTtcCtc35AY.440.000018
ORF1ab/nsp4375F375LttCttA25AY.440.000012
ORF1ab/nsp4375F375StTctCc55AY.450.000608
ORF1ab/nsp4375F375StTctCc55AY.560.008026
ORF1ab/nsp4375F375FttCttT55AY.880.004421
ORF1ab/nsp4375F375CtTctGc55B.1.177.620.005959
ORF1ab/nsp4375F375RTTCAGG24All0
ORF1ab/nsp4375F375RTTcCGc14All0
ORF1ab/nsp4375F375RTTCCGT14All0
ORF1ab/nsp4375F375YtTctAc44AY.1030.000025
ORF1ab/nsp4375F375StTctCc44AY.200.000155
ORF1ab/nsp4375F375StTctCc44AY.250.000024
ORF1ab/nsp4375F375delTTC---44AY.430.000018
ORF1ab/nsp4375F375StTctCc44AY.670.001857
ORF1ab/nsp4375F375FttCttT44AY.750.000224
ORF1ab/nsp4375F375StTctCc44AY.780.006163
ORF1ab/nsp4375F375StTctCc44AY.880.003537
ORF1ab/nsp4375F375StTctCc44AY.9.20.000147
ORF1ab/nsp4375F375FttCttT44B.1.1600.000125
ORF1ab/nsp4375F375FttCttT44B.1.36.180.001681
ORF1ab/nsp4375F375FttCttT44B.1.4270.000202
ORF1ab/nsp4375F375StTctCc44P.10.000063
ORF1ab/nsp4375F375FttCttT33AY.1000.000138
ORF1ab/nsp4375F375FttCttT33AY.200.000117
ORF1ab/nsp4375F375StTctCc33AY.220.006276
ORF1ab/nsp4375F375LttCttA33AY.260.000085
ORF1ab/nsp4375F375CtTctGc33AY.290.000047
ORF1ab/nsp4375F375FttCttT33AY.3.10.000256
ORF1ab/nsp4375F375FttCttT33AY.360.000445
ORF1ab/nsp4375F375FttCttT33AY.46.30.002801
ORF1ab/nsp4375F375StTctCc33AY.620.001307
ORF1ab/nsp4375F375StTctCc33AY.710.001425
ORF1ab/nsp4375F375StTctCc33AY.950.002283
ORF1ab/nsp4375F375LttCttA13B.1.10.000018
ORF1ab/nsp4375F375LTtCCtT13B.1.10.000018
ORF1ab/nsp4375F375LTtcCtc13B.1.10.000018
ORF1ab/nsp4375F375FttCttT33B.1.177.440.001557
ORF1ab/nsp4375F375LTtcCtc33B.1.20.000026
ORF1ab/nsp4375F375FttCttT33B.1.2580.0002
ORF1ab/nsp4375F375StTctCc33B.1.36.290.001552
ORF1ab/nsp4375F375FttCttT33B.1.3980.008929
ORF1ab/nsp4375F375StTctCc33B.1.5760.00272
ORF1ab/nsp4375F375FttCttT33C.370.000348
ORF1ab/nsp4375F375LTtcCtc33U.30.011583
ORF1ab/nsp4375F375NTTcAAc220.111111
ORF1ab/nsp4375F375MTtCAtG220.111111
ORF1ab/nsp4375F375RTTCAGG220.111111
ORF1ab/nsp4375F375StTCtCT220.111111
ORF1ab/nsp4375F375FttCttT220.111111
ORF1ab/nsp4375F375FttCttT22A.23.10.001408
ORF1ab/nsp4375F375ITtcAtc22All0
ORF1ab/nsp4375F375NTTcAAc22All0
ORF1ab/nsp4375F375MTtCAtG22All0
ORF1ab/nsp4375F375del2tTCt--22All0
ORF1ab/nsp4375F375HTTcCAc22All0
ORF1ab/nsp4375F375StTctCc22AY.100.00106
ORF1ab/nsp4375F375StTctCc22AY.1010.000981
ORF1ab/nsp4375F375LttCttA22AY.1020.000053
ORF1ab/nsp4375F375LTtcCtc12AY.1030.000006
ORF1ab/nsp4375F375LttCttA12AY.1030.000006
ORF1ab/nsp4375F375StTctCc22AY.110.002677
ORF1ab/nsp4375F375LttCttA12AY.1170.000085
ORF1ab/nsp4375F375LTtcCtc12AY.1170.000085
ORF1ab/nsp4375F375LTtcCtc12AY.1190.000035
ORF1ab/nsp4375F375LttCttG12AY.1190.000035
ORF1ab/nsp4375F375StTctCc22AY.120.000632
ORF1ab/nsp4375F375FttCttT22AY.140.000176
ORF1ab/nsp4375F375LttCttA12AY.200.000039
ORF1ab/nsp4375F375LttCttG12AY.200.000039
ORF1ab/nsp4375F375FttCttT22AY.230.000139
ORF1ab/nsp4375F375FttCttT22AY.23.10.000835
ORF1ab/nsp4375F375FttCttT22AY.240.000862
ORF1ab/nsp4375F375FttCttT22AY.270.000129
ORF1ab/nsp4375F375FttCttT22AY.290.000032
ORF1ab/nsp4375F375LttCttA22AY.40.000003
ORF1ab/nsp4375F375FttCttT22AY.4.50.000215
ORF1ab/nsp4375F375StTctCc22AY.530.000575
ORF1ab/nsp4375F375StTctCc22AY.700.000417
ORF1ab/nsp4375F375FttCttT22AY.9.10.000167
ORF1ab/nsp4375F375LttCttA12B.10.000009
ORF1ab/nsp4375F375LttCttG12B.10.000009
ORF1ab/nsp4375F375RTTCCGT12B.1.10.000018
ORF1ab/nsp4375F375RTTcCGc12B.1.10.000018
ORF1ab/nsp4375F375FttCttT22B.1.1.1700.002494
ORF1ab/nsp4375F375FttCttT22B.1.1.2980.001724
ORF1ab/nsp4375F375HTTcCAc22B.1.1.70.000002
ORF1ab/nsp4375F375del2tTCt--22B.1.1.70.000002
ORF1ab/nsp4375F375VTtCGtA12B.1.1.70.000001
ORF1ab/nsp4375F375VTtcGtc12B.1.1.70.000001
ORF1ab/nsp4375F375FttCttT22B.1.177.530.004785
ORF1ab/nsp4375F375delTTC---22B.1.177.690.002967
ORF1ab/nsp4375F375FttCttT22B.1.177.770.001452
ORF1ab/nsp4375F375delTTC---22B.1.20.000018
ORF1ab/nsp4375F375CtTctGc22B.1.20.000018
ORF1ab/nsp4375F375LttCttA22B.1.2210.000142
ORF1ab/nsp4375F375FttCttT22B.1.2320.001075
ORF1ab/nsp4375F375FttCttT22B.1.2340.000264
ORF1ab/nsp4375F375FttCttT22B.1.2400.000431
ORF1ab/nsp4375F375FttCttT22B.1.2430.000139
ORF1ab/nsp4375F375StTctCc22B.1.360.000292
ORF1ab/nsp4375F375FttCttT22B.1.5250.000226
ORF1ab/nsp4375F375CtTctGc22B.1.617.20.000008
ORF1ab/nsp4375F375delTTC---22B.1.617.20.000008
ORF1ab/nsp4375F375VTtCGtG12P.1.150.000232
ORF1ab/nsp4375F375VTtcGtc12P.1.150.000232
ORF1ab/nsp4375F375FttCttT22P.1.170.000324
ORF1ab/nsp4375F375FttCttT22R.10.00018
ORF1ab/nsp4375F375FttCttT11AD.20.000219
ORF1ab/nsp4375F375ATTcGCc11All0
ORF1ab/nsp4375F375delTTC---11AY.1000.000046
ORF1ab/nsp4375F375LttCttA11AY.1000.000046
ORF1ab/nsp4375F375StTctCc11AY.1060.000335
ORF1ab/nsp4375F375delTTC---11AY.1060.000335
ORF1ab/nsp4375F375StTctCc11AY.1100.000113
ORF1ab/nsp4375F375CtTctGc11AY.1110.000183
ORF1ab/nsp4375F375FttCttT11AY.1130.000142
ORF1ab/nsp4375F375CtTctGc11AY.1190.000035
ORF1ab/nsp4375F375FttCttT11AY.1190.000035
ORF1ab/nsp4375F375FttCttT11AY.1200.000037
ORF1ab/nsp4375F375FttCttT11AY.1210.000135
ORF1ab/nsp4375F375StTctCc11AY.140.000088
ORF1ab/nsp4375F375FttCttT11AY.160.00038
ORF1ab/nsp4375F375delTTC---11AY.190.00114
ORF1ab/nsp4375F375CtTctGc11AY.200.000039
ORF1ab/nsp4375F375StTctCc11AY.270.000065
ORF1ab/nsp4375F375StTctCc11AY.280.00189
ORF1ab/nsp4375F375StTctCc11AY.290.000016
ORF1ab/nsp4375F375LTtcCtc11AY.29.10.000221
ORF1ab/nsp4375F375LttCttA11AY.30.00001
ORF1ab/nsp4375F375FttCttT11AY.300.000396
ORF1ab/nsp4375F375StTctCc11AY.320.000532
ORF1ab/nsp4375F375StTctCc11AY.330.000067
ORF1ab/nsp4375F375StTctCc11AY.360.000148
ORF1ab/nsp4375F375CtTctGc11AY.370.000316
ORF1ab/nsp4375F375StTctCc11AY.380.000499
ORF1ab/nsp4375F375StTctCc11AY.390.000025
ORF1ab/nsp4375F375FttCttT11AY.39.10.00004
ORF1ab/nsp4375F375YtTctAc11AY.40.000002
ORF1ab/nsp4375F375CtTctGc11AY.4.30.000842
ORF1ab/nsp4375F375StTctCc11AY.410.000294
ORF1ab/nsp4375F375StTctCc11AY.420.00004
ORF1ab/nsp4375F375FttCttT11AY.420.00004
ORF1ab/nsp4375F375LTtcCtc11AY.430.000004
ORF1ab/nsp4375F375CtTctGc11AY.440.000006
ORF1ab/nsp4375F375StTctCc11AY.460.000104
ORF1ab/nsp4375F375LttCttA11AY.46.20.000635
ORF1ab/nsp4375F375delTTC---11AY.46.20.000635
ORF1ab/nsp4375F375FttCttT11AY.46.60.000072
ORF1ab/nsp4375F375FttCttT11AY.470.000031
ORF1ab/nsp4375F375StTctCc11AY.5.30.000337
ORF1ab/nsp4375F375StTctCc11AY.510.000909
ORF1ab/nsp4375F375FttCttT11AY.540.000095
ORF1ab/nsp4375F375StTctCc11AY.580.000907
ORF1ab/nsp4375F375FttCttT11AY.60.000041
ORF1ab/nsp4375F375delTTC---11AY.60.000041
ORF1ab/nsp4375F375FttCttT11AY.670.000464
ORF1ab/nsp4375F375delTTC---11AY.680.000274
ORF1ab/nsp4375F375FttCttT11AY.710.000475
ORF1ab/nsp4375F375delTTC---11AY.75.10.00018
ORF1ab/nsp4375F375StTctCc11AY.75.10.00018
ORF1ab/nsp4375F375FttCttT11AY.75.10.00018
ORF1ab/nsp4375F375StTctCc11AY.820.001357
ORF1ab/nsp4375F375StTctCc11AY.850.000427
ORF1ab/nsp4375F375FttCttT11AY.890.004902
ORF1ab/nsp4375F375delTTC---11AY.90.000068
ORF1ab/nsp4375F375FttCttT11AY.90.000068
ORF1ab/nsp4375F375delTTC---11AY.9.20.000037
ORF1ab/nsp4375F375FttCttT11AY.910.00073
ORF1ab/nsp4375F375StTctCc11AY.910.00073
ORF1ab/nsp4375F375FttCttT11AY.950.000761
ORF1ab/nsp4375F375StTctCc11AY.960.002075
ORF1ab/nsp4375F375FttCttT11AY.980.000079
ORF1ab/nsp4375F375FttCttT11AY.98.10.000048
ORF1ab/nsp4375F375delTTC---11AY.990.001049
ORF1ab/nsp4375F375delTTC---11AY.99.10.001553
ORF1ab/nsp4375F375StTctCc11AY.99.20.000092
ORF1ab/nsp4375F375delTTC---11B.1.10.000018
ORF1ab/nsp4375F375delTTC---11B.1.1.1390.022727
ORF1ab/nsp4375F375StTctCc11B.1.1.1620.029412
ORF1ab/nsp4375F375FttCttT11B.1.1.2140.000055
ORF1ab/nsp4375F375delTTC---11B.1.1.2320.001815
ORF1ab/nsp4375F375FttCttT11B.1.1.2320.001815
ORF1ab/nsp4375F375delTTC---11B.1.1.2360.006897
ORF1ab/nsp4375F375LttCttG11B.1.1.250.000569
ORF1ab/nsp4375F375FttCttT11B.1.1.250.000569
ORF1ab/nsp4375F375FttCttT11B.1.1.2690.001353
ORF1ab/nsp4375F375FttCttT11B.1.1.280.000311
ORF1ab/nsp4375F375FttCttT11B.1.1.2830.023256
ORF1ab/nsp4375F375FttCttT11B.1.1.2940.001266
ORF1ab/nsp4375F375FttCttT11B.1.1.3040.002809
ORF1ab/nsp4375F375FttCttT11B.1.1.3180.000302
ORF1ab/nsp4375F375FttCttT11B.1.1.340.013158
ORF1ab/nsp4375F375LttCttA11B.1.1.3720.000689
ORF1ab/nsp4375F375FttCttT11B.1.1.3720.000689
ORF1ab/nsp4375F375FttCttT11B.1.1.4160.000905
ORF1ab/nsp4375F375del1ttCtt-11B.1.1.4340.000349
ORF1ab/nsp4375F375del1ttCtt-11B.1.1.4480.002033
ORF1ab/nsp4375F375FttCttT11B.1.1.470.005348
ORF1ab/nsp4375F375FttCttT11B.1.1.630.000386
ORF1ab/nsp4375F375del1Ttc-tc11B.1.1.70.000001
ORF1ab/nsp4375F375delTTC---11B.1.1.700.000341
ORF1ab/nsp4375F375FttCttT11B.1.110.30.000718
ORF1ab/nsp4375F375LTtcCtc11B.1.160.70.002079
ORF1ab/nsp4375F375StTctCc11B.1.1770.000013
ORF1ab/nsp4375F375LTtcCtc11B.1.1770.000013
ORF1ab/nsp4375F375delTTC---11B.1.177.110.001698
ORF1ab/nsp4375F375delTTC---11B.1.177.170.000821
ORF1ab/nsp4375F375FttCttT11B.1.177.170.000821
ORF1ab/nsp4375F375delTTC---11B.1.177.180.00116
ORF1ab/nsp4375F375StTctCc11B.1.177.180.00116
ORF1ab/nsp4375F375FttCttT11B.1.177.190.001431
ORF1ab/nsp4375F375delTTC---11B.1.177.40.000211
ORF1ab/nsp4375F375LttCttA11B.1.177.430.001477
ORF1ab/nsp4375F375CtTctGc11B.1.177.440.000519
ORF1ab/nsp4375F375delTTC---11B.1.177.550.002331
ORF1ab/nsp4375F375ITtcAtc11B.1.177.560.000668
ORF1ab/nsp4375F375delTTC---11B.1.177.570.000281
ORF1ab/nsp4375F375delTTC---11B.1.177.580.001332
ORF1ab/nsp4375F375delTTC---11B.1.177.600.000218
ORF1ab/nsp4375F375FttCttT11B.1.177.730.000566
ORF1ab/nsp4375F375del1Ttc-tc11B.1.177.760.002494
ORF1ab/nsp4375F375FttCttT11B.1.177.800.001912
ORF1ab/nsp4375F375delTTC---11B.1.177.870.000728
ORF1ab/nsp4375F375StTctCc11B.1.2060.000816
ORF1ab/nsp4375F375FttCttT11B.1.2060.000816
ORF1ab/nsp4375F375StTctCc11B.1.2140.003663
ORF1ab/nsp4375F375FttCttT11B.1.2210.000071
ORF1ab/nsp4375F375delTTC---11B.1.230.006061
ORF1ab/nsp4375F375CtTctGc11B.1.2340.000132
ORF1ab/nsp4375F375delTTC---11B.1.2580.000067
ORF1ab/nsp4375F375StTctCc11B.1.2580.000067
ORF1ab/nsp4375F375FttCttT11B.1.2600.003344
ORF1ab/nsp4375F375FttCttT11B.1.2650.001271
ORF1ab/nsp4375F375FttCttT11B.1.351.20.000303
ORF1ab/nsp4375F375LTtcCtc11B.1.351.30.000876
ORF1ab/nsp4375F375del1ttCtt-11B.1.360.000146
ORF1ab/nsp4375F375FttCttT11B.1.36.160.001425
ORF1ab/nsp4375F375FttCttT11B.1.36.220.001208
ORF1ab/nsp4375F375LttCttA11B.1.36.290.000517
ORF1ab/nsp4375F375ITtcAtc11B.1.36.350.002604
ORF1ab/nsp4375F375delTTC---11B.1.36.380.001642
ORF1ab/nsp4375F375FttCttT11B.1.4380.006536
ORF1ab/nsp4375F375FttCttT11B.1.438.10.000107
ORF1ab/nsp4375F375StTctCc11B.1.4530.003236
ORF1ab/nsp4375F375StTctCc11B.1.4590.004082
ORF1ab/nsp4375F375FttCttT11B.1.4620.007246
ORF1ab/nsp4375F375FttCttT11B.1.5200.021739
ORF1ab/nsp4375F375StTctCc11B.1.5260.000024
ORF1ab/nsp4375F375FttCttT11B.1.5810.009434
ORF1ab/nsp4375F375LTtcCtc11B.1.5960.000087
ORF1ab/nsp4375F375StTctCc11B.1.5960.000087
ORF1ab/nsp4375F375YtTctAc11B.1.6090.000479
ORF1ab/nsp4375F375YtTctAc11B.1.617.10.000129
ORF1ab/nsp4375F375FttCttT11B.1.617.10.000129
ORF1ab/nsp4375F375ATTcGCc11B.1.617.20.000004
ORF1ab/nsp4375F375VTtcGtc11B.1.617.20.000004
ORF1ab/nsp4375F375StTctCc11B.1.6230.000536
ORF1ab/nsp4375F375FttCttT11B.1.6270.00202
ORF1ab/nsp4375F375StTctCc11B.400.000364
ORF1ab/nsp4375F375FttCttT11C.170.055556
ORF1ab/nsp4375F375CtTCtGT11C.350.000774
ORF1ab/nsp4375F375LttCttG11C.360.000911
ORF1ab/nsp4375F375FttCttT11C.36.30.000567
ORF1ab/nsp4375F375LTtcCtc11D.20.000075
ORF1ab/nsp4375F375FttCttT11D.20.000075
ORF1ab/nsp4375F375YtTctAc11D.20.000075
ORF1ab/nsp4375F375StTctCc11D.20.000075
ORF1ab/nsp4375F375FttCttT11P.1.10.000318
ORF1ab/nsp4375F375LttCttG11P.1.150.000232
ORF1ab/nsp4375F375delTTC---11Q.10.000126
ORF1ab/nsp4375F375FttCttT11Q.10.000126
ORF1ab/nsp4375F375FttCttT11Q.70.001111
ORF1ab/nsp4375F375FttCttT11Q.80.000165
ORF1ab/nsp4375F375delTTC---11U.30.003861
ORF1ab/nsp4375F375LTtcCtc11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.