CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 37 | T37I | T2800I | nonsyn | aCt | aTt | 3810 | 3810 | 1 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37T | T2800T | syn | acT | acC | 311 | 179 | 0.575563 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37T | T2800T | syn | acT | acA | 311 | 82 | 0.263666 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37T | T2800T | syn | acT | acG | 311 | 50 | 0.160772 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37N | T2800N | nonsyn | aCt | aAt | 130 | 128 | 0.984615 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37N | T2800N | nonsyn | aCT | aAC | 130 | 2 | 0.0153846 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37del | T2800del | del | ACT | --- | 123 | 123 | 1 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37A | T2800A | nonsyn | Act | Gct | 51 | 50 | 0.980392 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37A | T2800A | nonsyn | AcT | GcA | 51 | 1 | 0.0196078 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37S | T2800S | nonsyn | aCt | aGt | 23 | 14 | 0.608696 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37S | T2800S | nonsyn | Act | Tct | 23 | 7 | 0.304348 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37S | T2800S | nonsyn | aCT | aGC | 23 | 2 | 0.0869565 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37M | T2800M | nonsyn | aCT | aTG | 15 | 15 | 1 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37P | T2800P | nonsyn | Act | Cct | 8 | 6 | 0.75 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37P | T2800P | nonsyn | AcT | CcA | 8 | 2 | 0.25 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37del2 | T2800del2 | del | aCT | a-- | 3 | 2 | 0.666667 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37del2 | T2800del2 | del | ACT | --N | 3 | 1 | 0.333333 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37del1 | T2800del1 | del | Act | -ct | 2 | 2 | 1 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37D | T2800D | nonsyn | ACt | GAt | 2 | 2 | 1 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37R | T2800R | nonsyn | aCT | aGA | 2 | 2 | 1 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37K | T2800K | nonsyn | aCT | aAA | 2 | 2 | 1 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37L | T2800L | nonsyn | ACT | TTG | 2 | 1 | 0.5 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37L | T2800L | nonsyn | ACT | CTC | 2 | 1 | 0.5 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37H | T2800H | nonsyn | ACt | CAt | 1 | 1 | 1 | 8663-8665 |
ORF1ab/nsp4 | 37 | T37V | T2800V | nonsyn | ACt | GTt | 1 | 1 | 1 | 8663-8665 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3810 | 3810 | All | 0.000729 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 956 | 956 | AY.4 | 0.001488 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 745 | 745 | B.1.1.7 | 0.000667 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 325 | 325 | B.1.617.2 | 0.001224 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 179 | 311 | All | 0.000034 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 82 | 311 | All | 0.000016 |
ORF1ab/nsp4 | 37 | T37T | acT | acG | 50 | 311 | All | 0.00001 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 163 | 163 | B.1.177.70 | 0.964497 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 162 | 162 | AY.43 | 0.000718 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 161 | 161 | B.1.2 | 0.001418 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 142 | 142 | AY.4.2 | 0.00308 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 128 | 130 | All | 0.000024 |
ORF1ab/nsp4 | 37 | T37N | aCT | aAC | 2 | 130 | All | 0 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 123 | 123 | All | 0.000024 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 82 | 82 | AY.23 | 0.005719 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 72 | 74 | AY.4 | 0.000112 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 1 | 74 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 37 | T37T | acT | acG | 1 | 74 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 69 | 69 | B.1.1.231 | 0.213622 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 65 | 65 | B.1.177 | 0.000856 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 56 | 56 | B.1 | 0.000513 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 50 | 51 | All | 0.00001 |
ORF1ab/nsp4 | 37 | T37A | AcT | GcA | 1 | 51 | All | 0 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 51 | 51 | B.1.525 | 0.005771 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 49 | 49 | B.1.1.7 | 0.000044 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 48 | 48 | AY.47 | 0.001493 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 46 | 46 | B.1.460 | 0.821429 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 42 | 42 | AY.120 | 0.001562 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 42 | 42 | AY.3 | 0.000418 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 37 | 37 | AY.44 | 0.000225 |
ORF1ab/nsp4 | 37 | T37T | acT | acG | 34 | 36 | AY.44 | 0.000207 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 2 | 36 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 34 | 34 | B.1.429 | 0.0008 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 33 | 33 | AY.103 | 0.000205 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 30 | 30 | AY.25 | 0.00018 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 29 | 29 | AY.32 | 0.015442 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 28 | 28 | B.1.177 | 0.000369 |
ORF1ab/nsp4 | 37 | T37S | aCt | aGt | 14 | 23 | All | 0.000003 |
ORF1ab/nsp4 | 37 | T37S | Act | Tct | 7 | 23 | All | 0.000001 |
ORF1ab/nsp4 | 37 | T37S | aCT | aGC | 2 | 23 | All | 0 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 22 | 22 | B.1.1.70 | 0.007503 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 22 | 22 | B.1.351 | 0.000654 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 21 | 21 | AY.5 | 0.000434 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 21 | 21 | AY.85 | 0.008971 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 20 | 20 | A.2.5 | 0.00998 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 19 | 19 | AY.117 | 0.001606 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 13 | 19 | B.1.1.7 | 0.000012 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 6 | 19 | B.1.1.7 | 0.000005 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 19 | 19 | P.1.14 | 0.000908 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 17 | 17 | B.1.1 | 0.000308 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 16 | 16 | AY.39 | 0.000395 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 16 | 16 | P.1 | 0.000252 |
ORF1ab/nsp4 | 37 | T37M | aCT | aTG | 15 | 15 | All | 0.000003 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 15 | 15 | B.1.160 | 0.000468 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 13 | 13 | AY.102 | 0.000345 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 13 | 13 | AY.29.1 | 0.002867 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 13 | 13 | AY.75 | 0.000728 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 12 | 12 | AY.98.1 | 0.000581 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 12 | 12 | B.1.526 | 0.000282 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 11 | 11 | AY.29 | 0.000174 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 11 | 11 | B.1.1.318 | 0.003319 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 9 | 10 | B.1.1 | 0.000163 |
ORF1ab/nsp4 | 37 | T37T | acT | acG | 1 | 10 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 9 | 9 | B.1.1.434 | 0.003137 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp4 | 37 | T37P | Act | Cct | 6 | 8 | All | 0.000001 |
ORF1ab/nsp4 | 37 | T37P | AcT | CcA | 2 | 8 | All | 0 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 7 | 8 | AY.29 | 0.00011 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 1 | 8 | AY.29 | 0.000016 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 8 | 8 | B.1.311 | 0.002197 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 3 | 7 | AY.3 | 0.00003 |
ORF1ab/nsp4 | 37 | T37T | acT | acG | 3 | 7 | AY.3 | 0.00003 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 1 | 7 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 7 | 7 | B.1.1.420 | 0.007042 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 7 | 7 | B.1.517 | 0.002989 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 6 | 6 | AY.12 | 0.001896 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 6 | 6 | AY.67 | 0.002786 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 6 | 6 | B.1.177.44 | 0.003114 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 6 | 6 | B.1.400 | 0.002574 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 5 | 5 | AY.111 | 0.000916 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp4 | 37 | T37T | acT | acG | 4 | 5 | AY.5 | 0.000083 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 5 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 37 | T37T | acT | acG | 3 | 5 | B.1 | 0.000027 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 3 | 5 | B.1.617.2 | 0.000011 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 2 | 5 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 5 | 5 | B.1.627 | 0.010101 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 2 | 4 | 0.111111 | |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 2 | 4 | 0.111111 | |
ORF1ab/nsp4 | 37 | T37N | aCT | aAC | 2 | 4 | 0.111111 | |
ORF1ab/nsp4 | 37 | T37S | aCT | aGC | 2 | 4 | 0.111111 | |
ORF1ab/nsp4 | 37 | T37S | aCt | aGt | 2 | 4 | 0.111111 | |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 2 | 4 | 0.111111 | |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 4 | 4 | A.28 | 0.010582 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 3 | 4 | AY.103 | 0.000019 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 4 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp4 | 37 | T37M | aCT | aTG | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp4 | 37 | T37S | aCt | aGt | 3 | 4 | AY.44 | 0.000018 |
ORF1ab/nsp4 | 37 | T37S | Act | Tct | 1 | 4 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 4 | 4 | B.1.36.8 | 0.004 |
ORF1ab/nsp4 | 37 | T37S | aCt | aGt | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 3 | 4 | B.1.617.2 | 0.000011 |
ORF1ab/nsp4 | 37 | T37A | AcT | GcA | 1 | 4 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp4 | 37 | T37del2 | aCT | a-- | 2 | 3 | All | 0 |
ORF1ab/nsp4 | 37 | T37del2 | ACT | --N | 1 | 3 | All | 0 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 2 | 3 | AY.20 | 0.000078 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 1 | 3 | AY.20 | 0.000039 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp4 | 37 | T37M | aCT | aTG | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 2 | 3 | AY.43 | 0.000009 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 3 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp4 | 37 | T37S | Act | Tct | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp4 | 37 | T37S | aCt | aGt | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3 | 3 | B.1.1.50 | 0.002037 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3 | 3 | B.1.349 | 0.002144 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3 | 3 | B.1.588 | 0.00273 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp4 | 37 | T37K | aCT | aAA | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 37 | T37R | aCT | aGA | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 37 | T37P | AcT | CcA | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 37 | T37del1 | Act | -ct | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 37 | T37K | aCT | aAA | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 37 | T37D | ACt | GAt | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 37 | T37R | aCT | aGA | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 37 | T37L | ACT | TTG | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 37 | T37L | ACT | CTC | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp4 | 37 | T37M | aCT | aTG | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 2 | AY.23.1 | 0.000417 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 1 | 2 | AY.23.1 | 0.000417 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 37 | T37M | aCT | aTG | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp4 | 37 | T37P | Act | Cct | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 2 | 2 | B.1.1.315 | 0.016949 |
ORF1ab/nsp4 | 37 | T37T | acT | acG | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp4 | 37 | T37M | aCT | aTG | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | B.1.177.43 | 0.002954 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | B.1.206 | 0.001631 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | B.1.389 | 0.002004 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 2 | 2 | B.1.401 | 0.016393 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | C.36.1 | 0.008299 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | C.36.2 | 0.068966 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp4 | 37 | T37V | ACt | GTt | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 37 | T37H | ACt | CAt | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp4 | 37 | T37M | aCT | aTG | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp4 | 37 | T37P | Act | Cct | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp4 | 37 | T37S | Act | Tct | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp4 | 37 | T37S | Act | Tct | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 37 | T37S | aCt | aGt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp4 | 37 | T37S | aCt | aGt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp4 | 37 | T37M | aCT | aTG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp4 | 37 | T37P | Act | Cct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 37 | T37D | ACt | GAt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 37 | T37del1 | Act | -ct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp4 | 37 | T37del2 | ACT | --N | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp4 | 37 | T37del2 | aCT | a-- | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp4 | 37 | T37T | acT | acG | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 37 | T37V | ACt | GTt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 37 | T37S | Act | Tct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 1 | 1 | B.1.1.113 | 0.006993 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.1.196 | 0.005714 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.1.332 | 0.03125 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.1.355 | 0.015385 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.1.467 | 0.019231 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.1.52 | 0.012195 |
ORF1ab/nsp4 | 37 | T37D | ACt | GAt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 37 | T37P | Act | Cct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 37 | T37P | Act | Cct | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 37 | T37H | ACt | CAt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp4 | 37 | T37T | acT | acG | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp4 | 37 | T37S | aCt | aGt | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.314 | 0.007519 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp4 | 37 | T37del1 | Act | -ct | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp4 | 37 | T37S | Act | Tct | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 1 | 1 | B.1.517.1 | 0.005263 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp4 | 37 | T37L | ACT | CTC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp4 | 37 | T37L | ACT | TTG | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 37 | T37S | aCt | aGt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp4 | 37 | T37N | aCt | aAt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 37 | T37A | Act | Gct | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 37 | T37del2 | aCT | a-- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp4 | 37 | T37T | acT | acA | 1 | 1 | P.5 | 0.013699 |
ORF1ab/nsp4 | 37 | T37T | acT | acC | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp4 | 37 | T37I | aCt | aTt | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp4 | 37 | T37del | ACT | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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