CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 354 & Codon = aTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4354T354IT3117InonsynaCtaTt8468450.9988189614-9616

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4354T354IaCtaTt845846All0.000162
ORF1ab/nsp4354T354IaCtaTt229229AY.40.000356
ORF1ab/nsp4354T354IaCtaTt5656AY.1200.002082
ORF1ab/nsp4354T354IaCtaTt5656B.1.1.70.00005
ORF1ab/nsp4354T354IaCtaTt4747AY.440.000286
ORF1ab/nsp4354T354IaCtaTt3535AY.250.000211
ORF1ab/nsp4354T354IaCtaTt3535B.1.4270.001767
ORF1ab/nsp4354T354IaCtaTt2828B.1.617.20.000105
ORF1ab/nsp4354T354IaCtaTt2626AY.430.000115
ORF1ab/nsp4354T354IaCtaTt2020AY.1190.000706
ORF1ab/nsp4354T354IaCtaTt1919B.1.20.000167
ORF1ab/nsp4354T354IaCtaTt1818B.10.000165
ORF1ab/nsp4354T354IaCtaTt1818B.1.1.2220.003672
ORF1ab/nsp4354T354IaCtaTt1616B.1.2340.002111
ORF1ab/nsp4354T354IaCtaTt1515AY.1030.000093
ORF1ab/nsp4354T354IaCtaTt1414AY.4.20.000304
ORF1ab/nsp4354T354IaCtaTt1212B.1.10.000218
ORF1ab/nsp4354T354IaCtaTt1111AY.30.000109
ORF1ab/nsp4354T354IaCtaTt1111AY.39.10.000436
ORF1ab/nsp4354T354IaCtaTt99B.1.4290.000212
ORF1ab/nsp4354T354IaCtaTt88AY.290.000126
ORF1ab/nsp4354T354IaCtaTt88B.1.1770.000105
ORF1ab/nsp4354T354IaCtaTt77B.1.1600.000218
ORF1ab/nsp4354T354IaCtaTt66AY.200.000233
ORF1ab/nsp4354T354IaCtaTt66AY.4.50.000645
ORF1ab/nsp4354T354IaCtaTt66AY.50.000124
ORF1ab/nsp4354T354IaCtaTt66AY.98.10.000291
ORF1ab/nsp4354T354IaCtaTt55AY.1020.000133
ORF1ab/nsp4354T354IaCtaTt55AY.1110.000916
ORF1ab/nsp4354T354IaCtaTt55AY.1180.000313
ORF1ab/nsp4354T354IaCtaTt55AY.390.000124
ORF1ab/nsp4354T354IaCtaTt55AY.750.00028
ORF1ab/nsp4354T354IaCtaTt44B.1.6210.000354
ORF1ab/nsp4354T354IaCtaTt33AY.1060.001005
ORF1ab/nsp4354T354IaCtaTt33AY.1160.00086
ORF1ab/nsp4354T354IaCtaTt33AY.240.001293
ORF1ab/nsp4354T354IaCtaTt33AY.420.000121
ORF1ab/nsp4354T354IaCtaTt33AY.46.60.000217
ORF1ab/nsp4354T354IaCtaTt33AY.640.001786
ORF1ab/nsp4354T354IaCtaTt33AY.950.002283
ORF1ab/nsp4354T354IaCtaTt33B.1.177.600.000655
ORF1ab/nsp4354T354IaCtaTt33B.1.177.810.000568
ORF1ab/nsp4354T354IaCtaTt33B.1.5170.001281
ORF1ab/nsp4354T354IaCtaTt220.111111
ORF1ab/nsp4354T354IaCtaTt22AY.230.000139
ORF1ab/nsp4354T354IaCtaTt22AY.70.000392
ORF1ab/nsp4354T354IaCtaTt22B.1.1.3170.000823
ORF1ab/nsp4354T354IaCtaTt22B.1.177.50.002484
ORF1ab/nsp4354T354IaCtaTt22B.1.177.860.000367
ORF1ab/nsp4354T354IaCtaTt22B.1.2580.000133
ORF1ab/nsp4354T354IaCtaTt22B.1.3510.000059
ORF1ab/nsp4354T354IaCtaTt22B.1.4780.023529
ORF1ab/nsp4354T354IaCtaTt22B.1.5250.000226
ORF1ab/nsp4354T354IaCtaTt22B.1.6180.008065
ORF1ab/nsp4354T354IaCtaTt22P.10.000032
ORF1ab/nsp4354T354IaCtaTt22P.20.000373
ORF1ab/nsp4354T354IaCtaTt11A.10.000282
ORF1ab/nsp4354T354IaCtaTt11A.270.001656
ORF1ab/nsp4354T354IaCtaTt11AY.1170.000085
ORF1ab/nsp4354T354IaCtaTt11AY.1210.000135
ORF1ab/nsp4354T354IaCtaTt11AY.3.10.000085
ORF1ab/nsp4354T354IaCtaTt11AY.330.000067
ORF1ab/nsp4354T354IaCtaTt11AY.460.000104
ORF1ab/nsp4354T354IaCtaTt11AY.470.000031
ORF1ab/nsp4354T354IaCtaTt11AY.680.000274
ORF1ab/nsp4354T354IaCtaTt11AY.80.000606
ORF1ab/nsp4354T354IaCtaTt11AY.990.001049
ORF1ab/nsp4354T354IaCtaTt11AY.99.20.000092
ORF1ab/nsp4354T354IaCtaTt11B0.000128
ORF1ab/nsp4354T354IaCtaTt11B.1.1.250.000569
ORF1ab/nsp4354T354IaCtaTt11B.1.1.2620.015152
ORF1ab/nsp4354T354IaCtaTt11B.1.1.3110.000358
ORF1ab/nsp4354T354IaCtaTt11B.1.1.390.00051
ORF1ab/nsp4354T354IaCtaTt11B.1.1.4590.015385
ORF1ab/nsp4354T354IaCtaTt11B.1.1280.000635
ORF1ab/nsp4354T354IaCtaTt11B.1.177.440.000519
ORF1ab/nsp4354T354IaCtaTt11B.1.177.750.001041
ORF1ab/nsp4354T354IaCtaTt11B.1.177.870.000728
ORF1ab/nsp4354T354IaCtaTt11B.1.214.20.0006
ORF1ab/nsp4354T354IaCtaTt11B.1.2180.005155
ORF1ab/nsp4354T354IaCtaTt11B.1.3110.000275
ORF1ab/nsp4354T354IaCtaTt11B.1.3490.000715
ORF1ab/nsp4354T354IaCtaTt11B.1.351.30.000876
ORF1ab/nsp4354T354IaCtaTt11B.1.360.000146
ORF1ab/nsp4354T354IaCtaTt11B.1.3890.001002
ORF1ab/nsp4354T354IaCtaTt11B.1.4130.004255
ORF1ab/nsp4354T354IaCtaTt11B.1.4670.04
ORF1ab/nsp4354T354IaCtaTt11B.1.5820.000491
ORF1ab/nsp4354T354IaCtaTt11B.4.50.011905
ORF1ab/nsp4354T354IaCtaTt11B.400.000364
ORF1ab/nsp4354T354IaCtaTt11D.20.000075
ORF1ab/nsp4354T354IaCtaTt11P.1.10.000318
ORF1ab/nsp4354T354IaCtaTt11Q.10.000126
ORF1ab/nsp4354T354IaCtaTt11Q.80.000165