CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 354

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4354T354AT3117AnonsynActGct343234300.9994179614-9616
ORF1ab/nsp4354T354AT3117AnonsynAcTGcC343220.0005827519614-9616
ORF1ab/nsp4354T354IT3117InonsynaCtaTt8468450.9988189614-9616
ORF1ab/nsp4354T354IT3117InonsynaCTaTC84610.001182039614-9616
ORF1ab/nsp4354T354delT3117deldelACT---16916919614-9616
ORF1ab/nsp4354T354TT3117TsynacTacC104950.9134629614-9616
ORF1ab/nsp4354T354TT3117TsynacTacA10460.05769239614-9616
ORF1ab/nsp4354T354TT3117TsynacTacG10430.02884629614-9616
ORF1ab/nsp4354T354NT3117NnonsynaCtaAt878719614-9616
ORF1ab/nsp4354T354ST3117SnonsynaCtaGt1370.5384629614-9616
ORF1ab/nsp4354T354ST3117SnonsynaCTaGC1340.3076929614-9616
ORF1ab/nsp4354T354ST3117SnonsynActTct1320.1538469614-9616
ORF1ab/nsp4354T354del1T3117del1delacTac-730.4285719614-9616
ORF1ab/nsp4354T354del1T3117del1delAct-ct730.4285719614-9616
ORF1ab/nsp4354T354del1T3117del1delaCta-t710.1428579614-9616
ORF1ab/nsp4354T354FT3117FnonsynACtTTt320.6666679614-9616
ORF1ab/nsp4354T354FT3117FnonsynACTTTC310.3333339614-9616
ORF1ab/nsp4354T354PT3117PnonsynActCct2219614-9616
ORF1ab/nsp4354T354del2T3117del2delACT--G2219614-9616
ORF1ab/nsp4354T354VT3117VnonsynACtGTt1119614-9616
ORF1ab/nsp4354T354GT3117GnonsynACtGGt1119614-9616
ORF1ab/nsp4354T354RT3117RnonsynaCTaGG1119614-9616
ORF1ab/nsp4354T354LT3117LnonsynACtCTt1119614-9616

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4354T354AActGct34303432All0.000656
ORF1ab/nsp4354T354AAcTGcC23432All0
ORF1ab/nsp4354T354AActGct28062806B.1.6280.988724
ORF1ab/nsp4354T354IaCtaTt845846All0.000162
ORF1ab/nsp4354T354IaCTaTC1846All0
ORF1ab/nsp4354T354AActGct286286B.1.6340.979452
ORF1ab/nsp4354T354IaCtaTt229229AY.40.000356
ORF1ab/nsp4354T354delACT---169169All0.000032
ORF1ab/nsp4354T354TacTacC95104All0.000018
ORF1ab/nsp4354T354TacTacA6104All0.000001
ORF1ab/nsp4354T354TacTacG3104All0.000001
ORF1ab/nsp4354T354AActGct9898B.10.000898
ORF1ab/nsp4354T354delACT---8989B.1.1.70.00008
ORF1ab/nsp4354T354NaCtaAt8787All0.000017
ORF1ab/nsp4354T354AActGct8787B.1.1.70.000078
ORF1ab/nsp4354T354IaCtaTt5656AY.1200.002082
ORF1ab/nsp4354T354IaCtaTt5656B.1.1.70.00005
ORF1ab/nsp4354T354IaCtaTt4747AY.440.000286
ORF1ab/nsp4354T354AActGct3738AY.430.000164
ORF1ab/nsp4354T354AAcTGcC138AY.430.000004
ORF1ab/nsp4354T354TacTacC3737AY.340.003588
ORF1ab/nsp4354T354IaCtaTt3535AY.250.000211
ORF1ab/nsp4354T354IaCtaTt3535B.1.4270.001767
ORF1ab/nsp4354T354IaCtaTt2828B.1.617.20.000105
ORF1ab/nsp4354T354IaCtaTt2626AY.430.000115
ORF1ab/nsp4354T354IaCtaTt2020AY.1190.000706
ORF1ab/nsp4354T354IaCtaTt1919B.1.20.000167
ORF1ab/nsp4354T354IaCtaTt1818B.10.000165
ORF1ab/nsp4354T354IaCtaTt1818B.1.1.2220.003672
ORF1ab/nsp4354T354delACT---1818B.1.1770.000237
ORF1ab/nsp4354T354IaCtaTt1616B.1.2340.002111
ORF1ab/nsp4354T354IaCtaTt1515AY.1030.000093
ORF1ab/nsp4354T354AActGct1515AY.250.00009
ORF1ab/nsp4354T354NaCtaAt1515B.1.1.70.000013
ORF1ab/nsp4354T354NaCtaAt1515B.1.3510.000446
ORF1ab/nsp4354T354IaCtaTt1414AY.4.20.000304
ORF1ab/nsp4354T354SaCtaGt713All0.000001
ORF1ab/nsp4354T354SaCTaGC413All0.000001
ORF1ab/nsp4354T354SActTct213All0
ORF1ab/nsp4354T354TacTacC1313C.360.01184
ORF1ab/nsp4354T354TacTacC1212AY.440.000073
ORF1ab/nsp4354T354IaCtaTt1212B.1.10.000218
ORF1ab/nsp4354T354NaCtaAt1212B.1.20.000106
ORF1ab/nsp4354T354IaCtaTt1111AY.30.000109
ORF1ab/nsp4354T354IaCtaTt1111AY.39.10.000436
ORF1ab/nsp4354T354delACT---1111AY.40.000017
ORF1ab/nsp4354T354AActGct1010P.1.120.00484
ORF1ab/nsp4354T354IaCtaTt99B.1.4290.000212
ORF1ab/nsp4354T354NaCtaAt88AY.250.000048
ORF1ab/nsp4354T354IaCtaTt88AY.290.000126
ORF1ab/nsp4354T354delACT---88AY.4.50.00086
ORF1ab/nsp4354T354AActGct78AY.440.000043
ORF1ab/nsp4354T354AAcTGcC18AY.440.000006
ORF1ab/nsp4354T354IaCtaTt88B.1.1770.000105
ORF1ab/nsp4354T354AActGct88B.1.5580.03653
ORF1ab/nsp4354T354del1acTac-37All0.000001
ORF1ab/nsp4354T354del1Act-ct37All0.000001
ORF1ab/nsp4354T354del1aCta-t17All0
ORF1ab/nsp4354T354AActGct77AY.40.000011
ORF1ab/nsp4354T354AActGct77B.1.1.2040.021277
ORF1ab/nsp4354T354IaCtaTt77B.1.1600.000218
ORF1ab/nsp4354T354AActGct77B.1.617.20.000026
ORF1ab/nsp4354T354IaCtaTt66AY.200.000233
ORF1ab/nsp4354T354IaCtaTt66AY.4.50.000645
ORF1ab/nsp4354T354IaCtaTt66AY.50.000124
ORF1ab/nsp4354T354IaCtaTt66AY.98.10.000291
ORF1ab/nsp4354T354SaCTaGC450.222222
ORF1ab/nsp4354T354SActTct150.055556
ORF1ab/nsp4354T354IaCtaTt55AY.1020.000133
ORF1ab/nsp4354T354IaCtaTt55AY.1110.000916
ORF1ab/nsp4354T354IaCtaTt55AY.1180.000313
ORF1ab/nsp4354T354NaCtaAt55AY.260.000142
ORF1ab/nsp4354T354IaCtaTt55AY.390.000124
ORF1ab/nsp4354T354delACT---55AY.430.000022
ORF1ab/nsp4354T354IaCtaTt55AY.750.00028
ORF1ab/nsp4354T354del1Act-ct25B.1.1.70.000002
ORF1ab/nsp4354T354del1acTac-25B.1.1.70.000002
ORF1ab/nsp4354T354del1aCta-t15B.1.1.70.000001
ORF1ab/nsp4354T354AActGct55B.1.20.000044
ORF1ab/nsp4354T354TacTacC44AY.390.000099
ORF1ab/nsp4354T354NaCtaAt44AY.430.000018
ORF1ab/nsp4354T354AActGct44B.1.10.000073
ORF1ab/nsp4354T354TacTacC34B.1.1.70.000003
ORF1ab/nsp4354T354TacTacG14B.1.1.70.000001
ORF1ab/nsp4354T354delACT---44B.1.177.40.000844
ORF1ab/nsp4354T354TacTacC44B.1.20.000035
ORF1ab/nsp4354T354NaCtaAt44B.1.4290.000094
ORF1ab/nsp4354T354IaCtaTt44B.1.6210.000354
ORF1ab/nsp4354T354AActGct44B.1.6270.008081
ORF1ab/nsp4354T354FACtTTt23All0
ORF1ab/nsp4354T354FACTTTC13All0
ORF1ab/nsp4354T354IaCtaTt33AY.1060.001005
ORF1ab/nsp4354T354IaCtaTt33AY.1160.00086
ORF1ab/nsp4354T354TacTacC33AY.1170.000254
ORF1ab/nsp4354T354IaCtaTt33AY.240.001293
ORF1ab/nsp4354T354TacTacC33AY.250.000018
ORF1ab/nsp4354T354NaCtaAt33AY.330.0002
ORF1ab/nsp4354T354IaCtaTt33AY.420.000121
ORF1ab/nsp4354T354IaCtaTt33AY.46.60.000217
ORF1ab/nsp4354T354IaCtaTt33AY.640.001786
ORF1ab/nsp4354T354IaCtaTt33AY.950.002283
ORF1ab/nsp4354T354AActGct33B.1.1080.017442
ORF1ab/nsp4354T354AActGct33B.1.1770.00004
ORF1ab/nsp4354T354IaCtaTt33B.1.177.600.000655
ORF1ab/nsp4354T354IaCtaTt33B.1.177.810.000568
ORF1ab/nsp4354T354delACT---33B.1.177.870.002183
ORF1ab/nsp4354T354delACT---33B.1.20.000026
ORF1ab/nsp4354T354NaCtaAt33B.1.2580.0002
ORF1ab/nsp4354T354IaCtaTt33B.1.5170.001281
ORF1ab/nsp4354T354AActGct33B.1.5260.000071
ORF1ab/nsp4354T354delACT---33B.1.617.20.000011
ORF1ab/nsp4354T354TacTacC23B.1.617.20.000008
ORF1ab/nsp4354T354TacTacA13B.1.617.20.000004
ORF1ab/nsp4354T354IaCtaTt220.111111
ORF1ab/nsp4354T354del2ACT--G220.111111
ORF1ab/nsp4354T354FACtTTt220.111111
ORF1ab/nsp4354T354AActGct22A0.000774
ORF1ab/nsp4354T354del2ACT--G22All0
ORF1ab/nsp4354T354PActCct22All0
ORF1ab/nsp4354T354NaCtaAt22AY.1020.000053
ORF1ab/nsp4354T354AActGct22AY.1020.000053
ORF1ab/nsp4354T354NaCtaAt22AY.1030.000012
ORF1ab/nsp4354T354IaCtaTt22AY.230.000139
ORF1ab/nsp4354T354NaCtaAt22AY.40.000003
ORF1ab/nsp4354T354NaCtaAt22AY.610.00021
ORF1ab/nsp4354T354IaCtaTt22AY.70.000392
ORF1ab/nsp4354T354TacTacC22AY.9.20.000073
ORF1ab/nsp4354T354TacTacG12B.10.000009
ORF1ab/nsp4354T354TacTacC12B.10.000009
ORF1ab/nsp4354T354IaCtaTt22B.1.1.3170.000823
ORF1ab/nsp4354T354IaCtaTt22B.1.177.50.002484
ORF1ab/nsp4354T354AActGct22B.1.177.730.001133
ORF1ab/nsp4354T354IaCtaTt22B.1.177.860.000367
ORF1ab/nsp4354T354IaCtaTt22B.1.2580.000133
ORF1ab/nsp4354T354IaCtaTt22B.1.3510.000059
ORF1ab/nsp4354T354IaCtaTt22B.1.4780.023529
ORF1ab/nsp4354T354IaCtaTt22B.1.5250.000226
ORF1ab/nsp4354T354TacTacC22B.1.5950.000522
ORF1ab/nsp4354T354AActGct22B.1.5960.000174
ORF1ab/nsp4354T354IaCtaTt22B.1.6180.008065
ORF1ab/nsp4354T354TacTacA22D.20.00015
ORF1ab/nsp4354T354IaCtaTt22P.10.000032
ORF1ab/nsp4354T354AActGct22P.10.000032
ORF1ab/nsp4354T354IaCtaTt22P.20.000373
ORF1ab/nsp4354T354IaCtaTt11A.10.000282
ORF1ab/nsp4354T354AActGct11A.270.001656
ORF1ab/nsp4354T354IaCtaTt11A.270.001656
ORF1ab/nsp4354T354delACT---11AD.20.000219
ORF1ab/nsp4354T354LACtCTt11All0
ORF1ab/nsp4354T354GACtGGt11All0
ORF1ab/nsp4354T354RaCTaGG11All0
ORF1ab/nsp4354T354VACtGTt11All0
ORF1ab/nsp4354T354NaCtaAt11AY.10.000396
ORF1ab/nsp4354T354NaCtaAt11AY.1000.000046
ORF1ab/nsp4354T354AActGct11AY.1030.000006
ORF1ab/nsp4354T354delACT---11AY.1110.000183
ORF1ab/nsp4354T354IaCtaTt11AY.1170.000085
ORF1ab/nsp4354T354IaCtaTt11AY.1210.000135
ORF1ab/nsp4354T354delACT---11AY.190.00114
ORF1ab/nsp4354T354TacTacC11AY.200.000039
ORF1ab/nsp4354T354TacTacC11AY.230.00007
ORF1ab/nsp4354T354NaCtaAt11AY.270.000065
ORF1ab/nsp4354T354TacTacC11AY.290.000016
ORF1ab/nsp4354T354AActGct11AY.290.000016
ORF1ab/nsp4354T354IaCtaTt11AY.3.10.000085
ORF1ab/nsp4354T354IaCtaTt11AY.330.000067
ORF1ab/nsp4354T354AActGct11AY.390.000025
ORF1ab/nsp4354T354AActGct11AY.39.20.001541
ORF1ab/nsp4354T354del1acTac-11AY.40.000002
ORF1ab/nsp4354T354TacTacG11AY.40.000002
ORF1ab/nsp4354T354VACtGTt11AY.4.20.000022
ORF1ab/nsp4354T354AActGct11AY.420.00004
ORF1ab/nsp4354T354IaCtaTt11AY.460.000104
ORF1ab/nsp4354T354delACT---11AY.46.20.000635
ORF1ab/nsp4354T354IaCtaTt11AY.470.000031
ORF1ab/nsp4354T354AActGct11AY.50.000021
ORF1ab/nsp4354T354NaCtaAt11AY.540.000095
ORF1ab/nsp4354T354delACT---11AY.60.000041
ORF1ab/nsp4354T354delACT---11AY.600.000938
ORF1ab/nsp4354T354IaCTaTC11AY.670.000464
ORF1ab/nsp4354T354IaCtaTt11AY.680.000274
ORF1ab/nsp4354T354delACT---11AY.680.000274
ORF1ab/nsp4354T354IaCtaTt11AY.80.000606
ORF1ab/nsp4354T354delACT---11AY.90.000068
ORF1ab/nsp4354T354TacTacC11AY.990.001049
ORF1ab/nsp4354T354IaCtaTt11AY.990.001049
ORF1ab/nsp4354T354delACT---11AY.99.10.001553
ORF1ab/nsp4354T354IaCtaTt11AY.99.20.000092
ORF1ab/nsp4354T354IaCtaTt11B0.000128
ORF1ab/nsp4354T354NaCtaAt11B.10.000009
ORF1ab/nsp4354T354SaCtaGt11B.10.000009
ORF1ab/nsp4354T354GACtGGt11B.10.000009
ORF1ab/nsp4354T354FACTTTC11B.1.10.000018
ORF1ab/nsp4354T354NaCtaAt11B.1.10.000018
ORF1ab/nsp4354T354delACT---11B.1.10.000018
ORF1ab/nsp4354T354AActGct11B.1.1.1170.009709
ORF1ab/nsp4354T354delACT---11B.1.1.1390.022727
ORF1ab/nsp4354T354AActGct11B.1.1.2200.001859
ORF1ab/nsp4354T354IaCtaTt11B.1.1.250.000569
ORF1ab/nsp4354T354PActCct11B.1.1.250.000569
ORF1ab/nsp4354T354LACtCTt11B.1.1.250.000569
ORF1ab/nsp4354T354SActTct11B.1.1.2540.011236
ORF1ab/nsp4354T354IaCtaTt11B.1.1.2620.015152
ORF1ab/nsp4354T354NaCtaAt11B.1.1.2840.000107
ORF1ab/nsp4354T354IaCtaTt11B.1.1.3110.000358
ORF1ab/nsp4354T354delACT---11B.1.1.3120.001912
ORF1ab/nsp4354T354AActGct11B.1.1.330.000421
ORF1ab/nsp4354T354IaCtaTt11B.1.1.390.00051
ORF1ab/nsp4354T354AActGct11B.1.1.4130.006897
ORF1ab/nsp4354T354AActGct11B.1.1.4290.004608
ORF1ab/nsp4354T354IaCtaTt11B.1.1.4590.015385
ORF1ab/nsp4354T354delACT---11B.1.1.510.001718
ORF1ab/nsp4354T354SaCtaGt11B.1.1.5190.00004
ORF1ab/nsp4354T354PActCct11B.1.1.70.000001
ORF1ab/nsp4354T354SaCtaGt11B.1.1.70.000001
ORF1ab/nsp4354T354delACT---11B.1.1.700.000341
ORF1ab/nsp4354T354AActGct11B.1.1280.000635
ORF1ab/nsp4354T354IaCtaTt11B.1.1280.000635
ORF1ab/nsp4354T354TacTacA11B.1.1600.000031
ORF1ab/nsp4354T354del1Act-ct11B.1.1770.000013
ORF1ab/nsp4354T354TacTacC11B.1.1770.000013
ORF1ab/nsp4354T354delACT---11B.1.177.160.000664
ORF1ab/nsp4354T354delACT---11B.1.177.170.000821
ORF1ab/nsp4354T354delACT---11B.1.177.180.00116
ORF1ab/nsp4354T354IaCtaTt11B.1.177.440.000519
ORF1ab/nsp4354T354TacTacA11B.1.177.570.000281
ORF1ab/nsp4354T354delACT---11B.1.177.690.001484
ORF1ab/nsp4354T354IaCtaTt11B.1.177.750.001041
ORF1ab/nsp4354T354delACT---11B.1.177.760.002494
ORF1ab/nsp4354T354delACT---11B.1.177.860.000183
ORF1ab/nsp4354T354IaCtaTt11B.1.177.870.000728
ORF1ab/nsp4354T354IaCtaTt11B.1.214.20.0006
ORF1ab/nsp4354T354IaCtaTt11B.1.2180.005155
ORF1ab/nsp4354T354TacTacC11B.1.2210.000071
ORF1ab/nsp4354T354AActGct11B.1.2210.000071
ORF1ab/nsp4354T354SaCtaGt11B.1.221.30.000833
ORF1ab/nsp4354T354AActGct11B.1.2320.000537
ORF1ab/nsp4354T354NaCtaAt11B.1.2340.000132
ORF1ab/nsp4354T354AActGct11B.1.2430.00007
ORF1ab/nsp4354T354AActGct11B.1.2470.014925
ORF1ab/nsp4354T354delACT---11B.1.2580.000067
ORF1ab/nsp4354T354SaCtaGt11B.1.258.50.008772
ORF1ab/nsp4354T354IaCtaTt11B.1.3110.000275
ORF1ab/nsp4354T354IaCtaTt11B.1.3490.000715
ORF1ab/nsp4354T354IaCtaTt11B.1.351.30.000876
ORF1ab/nsp4354T354TacTacC11B.1.351.50.0006
ORF1ab/nsp4354T354IaCtaTt11B.1.360.000146
ORF1ab/nsp4354T354TacTacA11B.1.36.160.001425
ORF1ab/nsp4354T354AActGct11B.1.3750.00082
ORF1ab/nsp4354T354IaCtaTt11B.1.3890.001002
ORF1ab/nsp4354T354IaCtaTt11B.1.4130.004255
ORF1ab/nsp4354T354SaCtaGt11B.1.4290.000024
ORF1ab/nsp4354T354IaCtaTt11B.1.4670.04
ORF1ab/nsp4354T354NaCtaAt11B.1.5260.000024
ORF1ab/nsp4354T354IaCtaTt11B.1.5820.000491
ORF1ab/nsp4354T354TacTacC11B.1.6090.000479
ORF1ab/nsp4354T354RaCTaGG11B.1.617.20.000004
ORF1ab/nsp4354T354AActGct11B.1.6190.000871
ORF1ab/nsp4354T354AActGct11B.1.6210.000089
ORF1ab/nsp4354T354NaCtaAt11B.1.6370.000073
ORF1ab/nsp4354T354delACT---11B.150.017544
ORF1ab/nsp4354T354IaCtaTt11B.4.50.011905
ORF1ab/nsp4354T354IaCtaTt11B.400.000364
ORF1ab/nsp4354T354delACT---11C.170.055556
ORF1ab/nsp4354T354delACT---11C.350.000774
ORF1ab/nsp4354T354AActGct11C.370.000116
ORF1ab/nsp4354T354IaCtaTt11D.20.000075
ORF1ab/nsp4354T354SaCtaGt11P.10.000016
ORF1ab/nsp4354T354IaCtaTt11P.1.10.000318
ORF1ab/nsp4354T354AActGct11P.20.000187
ORF1ab/nsp4354T354IaCtaTt11Q.10.000126
ORF1ab/nsp4354T354delACT---11Q.10.000126
ORF1ab/nsp4354T354AActGct11Q.30.000145
ORF1ab/nsp4354T354IaCtaTt11Q.80.000165
ORF1ab/nsp4354T354TacTacC11R.10.00009