CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 353 & Codon = Ttt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4353L353FL3116FnonsynCttTtt8644864419611-9613

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4353L353FCttTtt86448644All0.001653
ORF1ab/nsp4353L353FCttTtt36823682B.1.1.70.003296
ORF1ab/nsp4353L353FCttTtt845845AY.40.001315
ORF1ab/nsp4353L353FCttTtt472472B.1.6270.953535
ORF1ab/nsp4353L353FCttTtt398398AY.390.009835
ORF1ab/nsp4353L353FCttTtt217217B.1.617.20.000817
ORF1ab/nsp4353L353FCttTtt187187AY.1030.001161
ORF1ab/nsp4353L353FCttTtt170170B.1.20.001497
ORF1ab/nsp4353L353FCttTtt143143AY.440.00087
ORF1ab/nsp4353L353FCttTtt142142B.1.1.5260.503546
ORF1ab/nsp4353L353FCttTtt127127B.1.3110.034871
ORF1ab/nsp4353L353FCttTtt119119B.1.2430.008281
ORF1ab/nsp4353L353FCttTtt108108R.10.009721
ORF1ab/nsp4353L353FCttTtt9494B.10.000861
ORF1ab/nsp4353L353FCttTtt8888B.1.1.5180.556962
ORF1ab/nsp4353L353FCttTtt8080P.10.00126
ORF1ab/nsp4353L353FCttTtt7777AY.430.000341
ORF1ab/nsp4353L353FCttTtt7474AY.250.000445
ORF1ab/nsp4353L353FCttTtt6161AY.39.10.002416
ORF1ab/nsp4353L353FCttTtt6161C.350.047214
ORF1ab/nsp4353L353FCttTtt5858AY.30.000577
ORF1ab/nsp4353L353FCttTtt5757AY.50.001177
ORF1ab/nsp4353L353FCttTtt5656B.1.10.001016
ORF1ab/nsp4353L353FCttTtt5555B.1.1770.000724
ORF1ab/nsp4353L353FCttTtt4747B.1.177.40.00992
ORF1ab/nsp4353L353FCttTtt4444AY.1010.021579
ORF1ab/nsp4353L353FCttTtt4040AY.1020.001061
ORF1ab/nsp4353L353FCttTtt3636B.1.1.500.02444
ORF1ab/nsp4353L353FCttTtt3333B.1.2580.002196
ORF1ab/nsp4353L353FCttTtt2727AY.99.20.002488
ORF1ab/nsp4353L353FCttTtt2626B.1.177.440.013492
ORF1ab/nsp4353L353FCttTtt2525B.1.4270.001262
ORF1ab/nsp4353L353FCttTtt2424AY.1000.001104
ORF1ab/nsp4353L353FCttTtt2424AY.4.2.10.003576
ORF1ab/nsp4353L353FCttTtt2323AY.1190.000812
ORF1ab/nsp4353L353FCttTtt2323AY.60.000946
ORF1ab/nsp4353L353FCttTtt2222B.1.1.3330.023681
ORF1ab/nsp4353L353FCttTtt2222B.1.4290.000518
ORF1ab/nsp4353L353FCttTtt2121AY.300.00831
ORF1ab/nsp4353L353FCttTtt2121B.1.1.5190.000834
ORF1ab/nsp4353L353FCttTtt2121B.1.258.170.002183
ORF1ab/nsp4353L353FCttTtt2121B.1.6210.001859
ORF1ab/nsp4353L353FCttTtt2020B.1.1600.000624
ORF1ab/nsp4353L353FCttTtt2020B.1.177.790.046838
ORF1ab/nsp4353L353FCttTtt1919AY.290.0003
ORF1ab/nsp4353L353FCttTtt1818B.1.177.580.023968
ORF1ab/nsp4353L353FCttTtt1818B.1.3610.023196
ORF1ab/nsp4353L353FCttTtt1818B.1.6370.001315
ORF1ab/nsp4353L353FCttTtt1818C.370.002089
ORF1ab/nsp4353L353FCttTtt1616AY.46.60.001155
ORF1ab/nsp4353L353FCttTtt1616C.360.014572
ORF1ab/nsp4353L353FCttTtt1515AY.330.001002
ORF1ab/nsp4353L353FCttTtt1515Q.80.002474
ORF1ab/nsp4353L353FCttTtt1414B.1.2340.001847
ORF1ab/nsp4353L353FCttTtt1313B.1.1.3110.004656
ORF1ab/nsp4353L353FCttTtt1313C.160.013786
ORF1ab/nsp4353L353FCttTtt1212AY.200.000466
ORF1ab/nsp4353L353FCttTtt1212AY.260.00034
ORF1ab/nsp4353L353FCttTtt1212B.1.5250.001358
ORF1ab/nsp4353L353FCttTtt1111AY.230.000767
ORF1ab/nsp4353L353FCttTtt1010A.210.027701
ORF1ab/nsp4353L353FCttTtt1010AY.9.10.000837
ORF1ab/nsp4353L353FCttTtt1010AY.98.10.000484
ORF1ab/nsp4353L353FCttTtt1010B.1.1.3150.084746
ORF1ab/nsp4353L353FCttTtt1010B.1.3750.008197
ORF1ab/nsp4353L353FCttTtt1010B.1.5750.003034
ORF1ab/nsp4353L353FCttTtt1010B.1.5960.000871
ORF1ab/nsp4353L353FCttTtt99B.1.1.700.00307
ORF1ab/nsp4353L353FCttTtt99B.1.5260.000212
ORF1ab/nsp4353L353FCttTtt99D.20.000675
ORF1ab/nsp4353L353FCttTtt99Q.10.001137
ORF1ab/nsp4353L353FCttTtt88A.2.50.003992
ORF1ab/nsp4353L353FCttTtt88AY.980.000632
ORF1ab/nsp4353L353FCttTtt88B.1.1.4340.002788
ORF1ab/nsp4353L353FCttTtt88B.1.3510.000238
ORF1ab/nsp4353L353FCttTtt88B.1.617.30.023881
ORF1ab/nsp4353L353FCttTtt88P.20.001493
ORF1ab/nsp4353L353FCttTtt77B.1.2210.000497
ORF1ab/nsp4353L353FCttTtt77B.1.360.001021
ORF1ab/nsp4353L353FCttTtt66AY.100.00318
ORF1ab/nsp4353L353FCttTtt66AY.1180.000376
ORF1ab/nsp4353L353FCttTtt66AY.140.000528
ORF1ab/nsp4353L353FCttTtt66AY.4.20.00013
ORF1ab/nsp4353L353FCttTtt66AY.470.000187
ORF1ab/nsp4353L353FCttTtt66AY.970.010204
ORF1ab/nsp4353L353FCttTtt55AY.4.50.000537
ORF1ab/nsp4353L353FCttTtt55AY.620.002179
ORF1ab/nsp4353L353FCttTtt55B.1.1.250.002843
ORF1ab/nsp4353L353FCttTtt55B.1.1.280.001556
ORF1ab/nsp4353L353FCttTtt44AY.1200.000149
ORF1ab/nsp4353L353FCttTtt44AY.320.00213
ORF1ab/nsp4353L353FCttTtt44AY.5.40.001107
ORF1ab/nsp4353L353FCttTtt44AY.9.20.000147
ORF1ab/nsp4353L353FCttTtt44B0.000511
ORF1ab/nsp4353L353FCttTtt44B.1.1.3180.001207
ORF1ab/nsp4353L353FCttTtt44B.1.3810.03125
ORF1ab/nsp4353L353FCttTtt44P.1.140.000191
ORF1ab/nsp4353L353FCttTtt33AY.120.000948
ORF1ab/nsp4353L353FCttTtt33AY.420.000121
ORF1ab/nsp4353L353FCttTtt33AY.46.50.000595
ORF1ab/nsp4353L353FCttTtt33AY.550.002752
ORF1ab/nsp4353L353FCttTtt33AY.650.001599
ORF1ab/nsp4353L353FCttTtt33AY.840.001312
ORF1ab/nsp4353L353FCttTtt33B.1.1.2140.000166
ORF1ab/nsp4353L353FCttTtt33B.1.1.2220.000612
ORF1ab/nsp4353L353FCttTtt33B.1.1.2840.000322
ORF1ab/nsp4353L353FCttTtt33B.1.1.3970.006757
ORF1ab/nsp4353L353FCttTtt33B.1.1.4290.013825
ORF1ab/nsp4353L353FCttTtt33B.1.1.4640.004418
ORF1ab/nsp4353L353FCttTtt33B.1.177.860.00055
ORF1ab/nsp4353L353FCttTtt33B.1.2400.000647
ORF1ab/nsp4353L353FCttTtt33B.1.351.50.001799
ORF1ab/nsp4353L353FCttTtt33B.1.4160.003807
ORF1ab/nsp4353L353FCttTtt33B.1.5760.00272
ORF1ab/nsp4353L353FCttTtt33B.1.617.10.000387
ORF1ab/nsp4353L353FCttTtt33B.1.6190.002613
ORF1ab/nsp4353L353FCttTtt33P.1.100.000808
ORF1ab/nsp4353L353FCttTtt33Q.30.000435
ORF1ab/nsp4353L353FCttTtt22AY.1160.000574
ORF1ab/nsp4353L353FCttTtt22AY.1170.000169
ORF1ab/nsp4353L353FCttTtt22AY.190.002281
ORF1ab/nsp4353L353FCttTtt22AY.340.000194
ORF1ab/nsp4353L353FCttTtt22AY.350.000466
ORF1ab/nsp4353L353FCttTtt22AY.360.000296
ORF1ab/nsp4353L353FCttTtt22AY.380.000999
ORF1ab/nsp4353L353FCttTtt22AY.460.000208
ORF1ab/nsp4353L353FCttTtt22AY.610.00021
ORF1ab/nsp4353L353FCttTtt22AY.670.000929
ORF1ab/nsp4353L353FCttTtt22AY.690.000373
ORF1ab/nsp4353L353FCttTtt22AY.740.000231
ORF1ab/nsp4353L353FCttTtt22AY.90.000135
ORF1ab/nsp4353L353FCttTtt22B.1.1.10.000653
ORF1ab/nsp4353L353FCttTtt22B.1.1.2070.002364
ORF1ab/nsp4353L353FCttTtt22B.1.1.3360.033333
ORF1ab/nsp4353L353FCttTtt22B.1.1.3690.000892
ORF1ab/nsp4353L353FCttTtt22B.1.1.4090.005666
ORF1ab/nsp4353L353FCttTtt22B.1.1110.00235
ORF1ab/nsp4353L353FCttTtt22B.1.177.210.000153
ORF1ab/nsp4353L353FCttTtt22B.1.177.750.002081
ORF1ab/nsp4353L353FCttTtt22B.1.177.810.000379
ORF1ab/nsp4353L353FCttTtt22B.1.2790.001027
ORF1ab/nsp4353L353FCttTtt22B.1.3560.003454
ORF1ab/nsp4353L353FCttTtt22B.1.36.180.00084
ORF1ab/nsp4353L353FCttTtt22B.1.362.20.009434
ORF1ab/nsp4353L353FCttTtt22B.1.4280.002041
ORF1ab/nsp4353L353FCttTtt22B.1.466.20.000782
ORF1ab/nsp4353L353FCttTtt22B.1.4710.005464
ORF1ab/nsp4353L353FCttTtt22B.1.4970.00063
ORF1ab/nsp4353L353FCttTtt22B.1.5610.000794
ORF1ab/nsp4353L353FCttTtt22B.1.5640.000852
ORF1ab/nsp4353L353FCttTtt22B.1.575.10.004878
ORF1ab/nsp4353L353FCttTtt22B.1.6060.012048
ORF1ab/nsp4353L353FCttTtt22P.1.10.000635
ORF1ab/nsp4353L353FCttTtt22P.1.70.000639
ORF1ab/nsp4353L353FCttTtt110.055556
ORF1ab/nsp4353L353FCttTtt11A.180.05
ORF1ab/nsp4353L353FCttTtt11A.290.005319
ORF1ab/nsp4353L353FCttTtt11AD.20.000219
ORF1ab/nsp4353L353FCttTtt11AE.80.000489
ORF1ab/nsp4353L353FCttTtt11AY.1130.000142
ORF1ab/nsp4353L353FCttTtt11AY.1140.000231
ORF1ab/nsp4353L353FCttTtt11AY.1210.000135
ORF1ab/nsp4353L353FCttTtt11AY.130.000161
ORF1ab/nsp4353L353FCttTtt11AY.16.10.00047
ORF1ab/nsp4353L353FCttTtt11AY.220.002092
ORF1ab/nsp4353L353FCttTtt11AY.34.10.00051
ORF1ab/nsp4353L353FCttTtt11AY.4.30.000842
ORF1ab/nsp4353L353FCttTtt11AY.400.000964
ORF1ab/nsp4353L353FCttTtt11AY.46.20.000635
ORF1ab/nsp4353L353FCttTtt11AY.46.30.000934
ORF1ab/nsp4353L353FCttTtt11AY.480.000465
ORF1ab/nsp4353L353FCttTtt11AY.530.000288
ORF1ab/nsp4353L353FCttTtt11AY.540.000095
ORF1ab/nsp4353L353FCttTtt11AY.560.001605
ORF1ab/nsp4353L353FCttTtt11AY.580.000907
ORF1ab/nsp4353L353FCttTtt11AY.680.000274
ORF1ab/nsp4353L353FCttTtt11AY.70.000196
ORF1ab/nsp4353L353FCttTtt11AY.7.10.000113
ORF1ab/nsp4353L353FCttTtt11AY.850.000427
ORF1ab/nsp4353L353FCttTtt11AY.920.000287
ORF1ab/nsp4353L353FCttTtt11B.1.1.1330.008475
ORF1ab/nsp4353L353FCttTtt11B.1.1.1890.001513
ORF1ab/nsp4353L353FCttTtt11B.1.1.1920.002309
ORF1ab/nsp4353L353FCttTtt11B.1.1.1960.005714
ORF1ab/nsp4353L353FCttTtt11B.1.1.2180.007692
ORF1ab/nsp4353L353FCttTtt11B.1.1.2210.010101
ORF1ab/nsp4353L353FCttTtt11B.1.1.2430.004082
ORF1ab/nsp4353L353FCttTtt11B.1.1.2630.001558
ORF1ab/nsp4353L353FCttTtt11B.1.1.2940.001266
ORF1ab/nsp4353L353FCttTtt11B.1.1.3060.000438
ORF1ab/nsp4353L353FCttTtt11B.1.1.3170.000412
ORF1ab/nsp4353L353FCttTtt11B.1.1.330.000421
ORF1ab/nsp4353L353FCttTtt11B.1.1.3480.000796
ORF1ab/nsp4353L353FCttTtt11B.1.1.370.000193
ORF1ab/nsp4353L353FCttTtt11B.1.1.3750.011905
ORF1ab/nsp4353L353FCttTtt11B.1.1.4160.000905
ORF1ab/nsp4353L353FCttTtt11B.1.1.4320.001266
ORF1ab/nsp4353L353FCttTtt11B.1.1.5280.004808
ORF1ab/nsp4353L353FCttTtt11B.1.110.30.000718
ORF1ab/nsp4353L353FCttTtt11B.1.1150.021739
ORF1ab/nsp4353L353FCttTtt11B.1.1570.002985
ORF1ab/nsp4353L353FCttTtt11B.1.160.300.002976
ORF1ab/nsp4353L353FCttTtt11B.1.1660.008475
ORF1ab/nsp4353L353FCttTtt11B.1.1690.014925
ORF1ab/nsp4353L353FCttTtt11B.1.177.430.001477
ORF1ab/nsp4353L353FCttTtt11B.1.177.690.001484
ORF1ab/nsp4353L353FCttTtt11B.1.177.70.000165
ORF1ab/nsp4353L353FCttTtt11B.1.214.20.0006
ORF1ab/nsp4353L353FCttTtt11B.1.2220.001692
ORF1ab/nsp4353L353FCttTtt11B.1.2230.002778
ORF1ab/nsp4353L353FCttTtt11B.1.2320.000537
ORF1ab/nsp4353L353FCttTtt11B.1.2360.002053
ORF1ab/nsp4353L353FCttTtt11B.1.2370.004975
ORF1ab/nsp4353L353FCttTtt11B.1.2410.000812
ORF1ab/nsp4353L353FCttTtt11B.1.2600.003344
ORF1ab/nsp4353L353FCttTtt11B.1.30.002618
ORF1ab/nsp4353L353FCttTtt11B.1.3240.001605
ORF1ab/nsp4353L353FCttTtt11B.1.36.10.00114
ORF1ab/nsp4353L353FCttTtt11B.1.36.160.001425
ORF1ab/nsp4353L353FCttTtt11B.1.36.310.001751
ORF1ab/nsp4353L353FCttTtt11B.1.36.380.001642
ORF1ab/nsp4353L353FCttTtt11B.1.36.80.001
ORF1ab/nsp4353L353FCttTtt11B.1.3960.000706
ORF1ab/nsp4353L353FCttTtt11B.1.4040.001302
ORF1ab/nsp4353L353FCttTtt11B.1.4110.003704
ORF1ab/nsp4353L353FCttTtt11B.1.4250.002994
ORF1ab/nsp4353L353FCttTtt11B.1.4260.001009
ORF1ab/nsp4353L353FCttTtt11B.1.4380.006536
ORF1ab/nsp4353L353FCttTtt11B.1.438.10.000107
ORF1ab/nsp4353L353FCttTtt11B.1.438.40.021277
ORF1ab/nsp4353L353FCttTtt11B.1.4440.015873
ORF1ab/nsp4353L353FCttTtt11B.1.4620.007246
ORF1ab/nsp4353L353FCttTtt11B.1.4700.001404
ORF1ab/nsp4353L353FCttTtt11B.1.4800.002488
ORF1ab/nsp4353L353FCttTtt11B.1.5090.000866
ORF1ab/nsp4353L353FCttTtt11B.1.5170.000427
ORF1ab/nsp4353L353FCttTtt11B.1.5240.001406
ORF1ab/nsp4353L353FCttTtt11B.1.5510.00129
ORF1ab/nsp4353L353FCttTtt11B.1.564.10.001577
ORF1ab/nsp4353L353FCttTtt11B.1.575.20.004808
ORF1ab/nsp4353L353FCttTtt11B.1.5800.004065
ORF1ab/nsp4353L353FCttTtt11B.1.5880.00091
ORF1ab/nsp4353L353FCttTtt11B.1.5990.00365
ORF1ab/nsp4353L353FCttTtt11B.40.002208
ORF1ab/nsp4353L353FCttTtt11B.400.000364
ORF1ab/nsp4353L353FCttTtt11B.420.033333
ORF1ab/nsp4353L353FCttTtt11B.6.80.008264
ORF1ab/nsp4353L353FCttTtt11C.270.018519
ORF1ab/nsp4353L353FCttTtt11C.300.001727
ORF1ab/nsp4353L353FCttTtt11C.36.30.000567
ORF1ab/nsp4353L353FCttTtt11N.50.001767
ORF1ab/nsp4353L353FCttTtt11P.1.120.000484
ORF1ab/nsp4353L353FCttTtt11P.1.150.000232
ORF1ab/nsp4353L353FCttTtt11P.1.170.000162
ORF1ab/nsp4353L353FCttTtt11P.1.90.004808
ORF1ab/nsp4353L353FCttTtt11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.