CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 35 & Codon = Gaa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp435K35EK2798EnonsynAaaGaa464618657-8659

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp435K35EAaaGaa4646All0.000009
ORF1ab/nsp435K35EAaaGaa66B.1.360.000875
ORF1ab/nsp435K35EAaaGaa44AY.40.000006
ORF1ab/nsp435K35EAaaGaa44B.1.1.70.000004
ORF1ab/nsp435K35EAaaGaa33B.1.617.20.000011
ORF1ab/nsp435K35EAaaGaa220.111111
ORF1ab/nsp435K35EAaaGaa22AY.1000.000092
ORF1ab/nsp435K35EAaaGaa22AY.430.000009
ORF1ab/nsp435K35EAaaGaa22AY.520.001629
ORF1ab/nsp435K35EAaaGaa22B.10.000018
ORF1ab/nsp435K35EAaaGaa22B.1.20.000018
ORF1ab/nsp435K35EAaaGaa22C.370.000232
ORF1ab/nsp435K35EAaaGaa11A.230.010526
ORF1ab/nsp435K35EAaaGaa11AY.1030.000006
ORF1ab/nsp435K35EAaaGaa11AY.30.00001
ORF1ab/nsp435K35EAaaGaa11AY.460.000104
ORF1ab/nsp435K35EAaaGaa11AY.750.000056
ORF1ab/nsp435K35EAaaGaa11AY.840.000437
ORF1ab/nsp435K35EAaaGaa11B.1.1.4090.002833
ORF1ab/nsp435K35EAaaGaa11B.1.177.210.000076
ORF1ab/nsp435K35EAaaGaa11B.1.2430.00007
ORF1ab/nsp435K35EAaaGaa11B.1.3510.00003
ORF1ab/nsp435K35EAaaGaa11B.1.4000.000429
ORF1ab/nsp435K35EAaaGaa11B.1.4620.007246
ORF1ab/nsp435K35EAaaGaa11B.1.5900.004545
ORF1ab/nsp435K35EAaaGaa11B.1.6250.002353
ORF1ab/nsp435K35EAaaGaa11B.550.00295

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.